AT3G18160

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008455
Physical Location & Seq
Forward (+)
6220567 .. 6223073
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18160.1

Sequence Viewer

Length: 1077 bp
ATGGATTTAGTCAGGGGTTTGTGGAGGAAACATAGAAGGAAGATTTTGGTGACGACGACTTGTTTGGGAAGTGGGTATTTGCTCTATAAACTATACAATGCCCATACTCGTAAGCTCGCTGATTTGGAACGAGAGCTTGCTAATGAGCGTGAAAACGACGAGATCATCAAAACCCAAATGAAGGCACATTTCGATAACATTCAGATGATTGCTGATACTACTACATTGCCTCACGCAATTCATCACTTGAGTAGTCGTGTAGTTGAAGAGATTGATGTCTCGAGTATTATGGATAAGCTAAGCAAAGGCAAAGGAATATTGATTCCTTCTGAGAAGCTTCAACTCTGGAATGAGCTCAAAATTTTGAGTTTCACGAGAATGGTCTTGTCCCTTTGGTCGGTCACTATGCTTAGTTTGTACATTAGGGTTCAAGTCAATATTTTGGGCAGACATTTATATATCGACACTGCTAGAGGTCTTGGGAGCTCCCATTTACTTGACGAACTAGATCTCATAGAGAGAGATGATGAACAAAAGTTTTTGACAAGCGCTGATTTTCTTGCGACCAGTGGCATGCCGAGTTTGATTTCTAACATGCAGAACGCAGTGAAAGAAGTTCTCAAGGGAAAGCAGTTAAAGGATGTGTTAACCACAAGTGCTCTTCGAGAAACTGTGATGCGGATTCTCGATGTGTTTATGAGCACAGGAAGTCCACACCACTGGGTAGATTATCTAATGATGTCCCAAGACGCAACCACTGATGTTTCCTCTTCTGATGCAACTGTTACCAAGTTTCATCTACTCATAACCGAGACACGGGAAGTACTCACAAGCAATGATTTTTCAAATGTAGCAGAGATCTCACTCAAGTGTTGTGCCGTTGCGTTAGTAGAGGAGATGGAAACGCAGACCGGTCTGGCCACAGGGATGCAATTGGCAAAGCTATTACCACAGATTGAGAAAACCATGCCGGAGATTTCAGCTGAGCCGGAGAAGAACCGGTTCTTGCAACTCATCCGAGATTTGCCTGAAGTTAAACTCTTTTTTACTCTTTTATACGCAAATATGCCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Peroxin-3

Protein Analysis

358

Amino Acids

40.68

Weight (kDa)

6.02

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peroxin-3 PF04882 111 - 355 1.9e-23 Peroxin-3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 679
AcoI YGGCCR 1 cut(s) 918
AcsI RAATTY 1 cut(s) 360
AcuI CTGAAG 1 cut(s) 1050
AfaI GTAC 2 cut(s) 419, 825
AfeI AGCGCT 1 cut(s) 550
AfiI CCNNNNNNNGG 3 cut(s) 181, 397, 816
AgeI ACCGGT 2 cut(s) 911, 999
AgsI TTSAA 4 cut(s) 266, 341, 431, 846
AleI CACNNNNGTG 1 cut(s) 868
AluBI AGCT 8 cut(s) 115, 136, 298, 337, 355, 486, 943, 983
AluI AGCT 8 cut(s) 115, 136, 298, 337, 355, 486, 943, 983
Alw21I GWGCWC 4 cut(s) 357, 488, 661, 704
Alw26I GTCTC 2 cut(s) 283, 806
Ama87I CYCGRG 1 cut(s) 280
Aor51HI AGCGCT 1 cut(s) 550
AoxI GGCC 1 cut(s) 918
ApoI RAATTY 1 cut(s) 360
ArsI GACNNNNNNTTYG 2 cut(s) 46, 78
AsiGI ACCGGT 2 cut(s) 911, 999
Asp700I GAANNNNTTC 1 cut(s) 1001
AspLEI GCGC 1 cut(s) 551
AsuHPI GGTGA 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 280
BalI TGGCCA 1 cut(s) 920
BanII GRGCYC 2 cut(s) 357, 488
BauI CACGAG 1 cut(s) 373
Bbv12I GWGCWC 4 cut(s) 357, 488, 661, 704
BccI CCATC 1 cut(s) 892
BceAI ACGGC 1 cut(s) 863
BcoDI GTCTC 2 cut(s) 283, 806
BfaI CTAG 2 cut(s) 471, 506
BfoI RGCGCY 1 cut(s) 552
BglII AGATCT 2 cut(s) 508, 858
BlpI GCTNAGC 2 cut(s) 299, 984
BmcAI AGTACT 1 cut(s) 825
BmeT110I CYCGRG 1 cut(s) 280
BmrI ACTGGG 1 cut(s) 730
BmsI GCATC 3 cut(s) 666, 766, 918
BmuI ACTGGG 1 cut(s) 730
Bpu1102I GCTNAGC 2 cut(s) 299, 984
BpuEI CTTGAG 3 cut(s) 268, 605, 851
BsaWI WCCGGW 2 cut(s) 911, 999
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 397, 816
Bse118I RCCGGY 2 cut(s) 911, 999
Bse1I ACTGG 2 cut(s) 567, 725
Bse3DI GCAATG 2 cut(s) 224, 841
BseGI GGATG 3 cut(s) 646, 933, 1014
BseLI CCNNNNNNNGG 3 cut(s) 181, 397, 816
BseMI GCAATG 2 cut(s) 224, 841
BseMII CTCAG 2 cut(s) 321, 975
BseNI ACTGG 2 cut(s) 567, 725
BseRI GAGGAG 1 cut(s) 908
BshFI GGCC 1 cut(s) 920
BshTI ACCGGT 2 cut(s) 911, 999
BsiHKAI GWGCWC 4 cut(s) 357, 488, 661, 704
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 4 cut(s) 912, 971, 989, 1000
BslFI GGGAC 2 cut(s) 373, 727
BslI CCNNNNNNNGG 3 cut(s) 181, 397, 816
BsmAI GTCTC 2 cut(s) 283, 806
BsmFI GGGAC 2 cut(s) 373, 727
BsnI GGCC 1 cut(s) 920
BsoBI CYCGRG 1 cut(s) 280
Bsp1286I GDGCHC 4 cut(s) 357, 488, 661, 704
Bsp1407I TGTACA 1 cut(s) 417
Bsp143I GATC 3 cut(s) 162, 508, 858
Bsp1720I GCTNAGC 2 cut(s) 299, 984
BspACI CCGC 1 cut(s) 679
BspANI GGCC 1 cut(s) 920
BspCNI CTCAG 2 cut(s) 322, 976
BspQI GCTCTTC 1 cut(s) 666
BsrDI GCAATG 2 cut(s) 224, 841
BsrFI RCCGGY 2 cut(s) 911, 999
BsrGI TGTACA 1 cut(s) 417
BsrI ACTGG 2 cut(s) 567, 725
BssAI RCCGGY 2 cut(s) 911, 999
BssMI GATC 3 cut(s) 162, 508, 858
BssSI CACGAG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 373
Bst4CI ACNGT 2 cut(s) 673, 784
Bst6I CTCTTC 3 cut(s) 261, 666, 775
BstAUI TGTACA 1 cut(s) 417
BstC8I GCNNGC 3 cut(s) 117, 138, 575
BstDEI CTNAG 5 cut(s) 299, 330, 410, 984, 1071
BstF5I GGATG 3 cut(s) 646, 933, 1014
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 3 cut(s) 165, 511, 861
BstMAI GTCTC 2 cut(s) 283, 806
BstMBI GATC 3 cut(s) 162, 508, 858
BstNSI RCATGY 2 cut(s) 577, 598
BstX2I RGATCY 2 cut(s) 508, 858
BstXI CCANNNNNNTGG 1 cut(s) 720
BstYI RGATCY 2 cut(s) 508, 858
BsuRI GGCC 1 cut(s) 920
BtsCI GGATG 3 cut(s) 646, 933, 1014
BtsI GCAGTG 2 cut(s) 465, 612
BtsIMutI CAGTG 5 cut(s) 465, 574, 612, 718, 756
Cac8I GCNNGC 3 cut(s) 117, 138, 575
CfoI GCGC 1 cut(s) 551
Cfr10I RCCGGY 2 cut(s) 911, 999
CseI GACGC 1 cut(s) 758
Csp6I GTAC 2 cut(s) 418, 824
CspAI ACCGGT 2 cut(s) 911, 999
CviAII CATG 3 cut(s) 574, 595, 967
CviQI GTAC 2 cut(s) 418, 824
DdeI CTNAG 5 cut(s) 299, 330, 410, 984, 1071
DpnI GATC 3 cut(s) 164, 510, 860
DpnII GATC 3 cut(s) 162, 508, 858
EaeI YGGCCR 1 cut(s) 918
Eam1104I CTCTTC 3 cut(s) 261, 666, 775
EarI CTCTTC 3 cut(s) 261, 666, 775
Ecl136II GAGCTC 2 cut(s) 355, 486
Eco24I GRGCYC 2 cut(s) 357, 488
Eco47III AGCGCT 1 cut(s) 550
Eco53kI GAGCTC 2 cut(s) 355, 486
Eco57I CTGAAG 1 cut(s) 1050
Eco88I CYCGRG 1 cut(s) 280
EcoICRI GAGCTC 2 cut(s) 355, 486
EcoT38I GRGCYC 2 cut(s) 357, 488
FaeI CATG 3 cut(s) 577, 598, 970
FaqI GGGAC 2 cut(s) 373, 727
FatI CATG 3 cut(s) 573, 594, 966
FokI GGATG 3 cut(s) 653, 940, 1001
FriOI GRGCYC 2 cut(s) 357, 488
FspBI CTAG 2 cut(s) 471, 506
GlaI GCGC 1 cut(s) 550
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 1 cut(s) 920
HapII CCGG 4 cut(s) 912, 971, 989, 1000
HgaI GACGC 1 cut(s) 758
HhaI GCGC 1 cut(s) 551
Hin1II CATG 3 cut(s) 577, 598, 970
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 2 cut(s) 322, 682
HpaI GTTAAC 1 cut(s) 648
HpaII CCGG 4 cut(s) 912, 971, 989, 1000
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 648, 713
Hpy188I TCNGA 4 cut(s) 204, 331, 775, 1019
Hpy188III TCNNGA 5 cut(s) 280, 346, 373, 665, 686
Hpy8I GTNNAC 2 cut(s) 648, 713
Hpy99I CGWCG 2 cut(s) 58, 161
HpyAV CCTTC 3 cut(s) 30, 175, 336
HpyCH4III ACNGT 2 cut(s) 673, 784
HpyCH4V TGCA 4 cut(s) 598, 779, 931, 1009
HpyF3I CTNAG 5 cut(s) 299, 330, 410, 984, 1071
Hsp92II CATG 3 cut(s) 577, 598, 970
HspAI GCGC 1 cut(s) 549
KspAI GTTAAC 1 cut(s) 648
Kzo9I GATC 3 cut(s) 162, 508, 858
LguI GCTCTTC 1 cut(s) 666
LmnI GCTCC 2 cut(s) 483, 491
LweI GCATC 3 cut(s) 666, 766, 918
MaeI CTAG 2 cut(s) 471, 506
MaeIII GTNAC 3 cut(s) 49, 400, 784
MalI GATC 3 cut(s) 164, 510, 860
MboI GATC 3 cut(s) 162, 508, 858
MboII GAAGA 5 cut(s) 52, 278, 653, 762, 1006
MfeI CAATTG 1 cut(s) 932
MflI RGATCY 2 cut(s) 508, 858
MhlI GDGCHC 4 cut(s) 357, 488, 661, 704
MlsI TGGCCA 1 cut(s) 920
MluCI AATT 3 cut(s) 237, 360, 932
MluNI TGGCCA 1 cut(s) 920
MnlI CCTC 5 cut(s) 18, 240, 467, 778, 886
Mox20I TGGCCA 1 cut(s) 920
MroXI GAANNNNTTC 1 cut(s) 1001
MscI TGGCCA 1 cut(s) 920
MseI TTAA 3 cut(s) 635, 647, 1035
MslI CAYNNNNRTG 4 cut(s) 203, 377, 868, 926
Msp20I TGGCCA 1 cut(s) 920
MspA1I CMGCKG 1 cut(s) 983
MspI CCGG 4 cut(s) 912, 971, 989, 1000
MunI CAATTG 1 cut(s) 932
NdeII GATC 3 cut(s) 162, 508, 858
NlaIII CATG 3 cut(s) 577, 598, 970
NmeAIII GCCGAG 1 cut(s) 603
NmuCI GTSAC 2 cut(s) 49, 400
NspI RCATGY 2 cut(s) 577, 598
OliI CACNNNNGTG 1 cut(s) 868
PaeI GCATGC 1 cut(s) 577
PaeR7I CTCGAG 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 666
PdmI GAANNNNTTC 1 cut(s) 1001
PfeI GAWTC 2 cut(s) 322, 682
PinAI ACCGGT 2 cut(s) 911, 999
Psp124BI GAGCTC 2 cut(s) 357, 488
PsuI RGATCY 2 cut(s) 508, 858
PvuII CAGCTG 1 cut(s) 983
RsaI GTAC 2 cut(s) 419, 825
RsaNI GTAC 2 cut(s) 418, 824
RseI CAYNNNNRTG 4 cut(s) 203, 377, 868, 926
SacI GAGCTC 2 cut(s) 357, 488
SapI GCTCTTC 1 cut(s) 666
SaqAI TTAA 3 cut(s) 635, 647, 1035
Sau3AI GATC 3 cut(s) 162, 508, 858
ScaI AGTACT 1 cut(s) 825
SduI GDGCHC 4 cut(s) 357, 488, 661, 704
SetI ASST 9 cut(s) 117, 138, 300, 339, 357, 478, 488, 945, 985
SfaNI GCATC 3 cut(s) 666, 766, 918
Sfr274I CTCGAG 1 cut(s) 280
SlaI CTCGAG 1 cut(s) 280
SmiMI CAYNNNNRTG 4 cut(s) 203, 377, 868, 926
SmlI CTYRAG 4 cut(s) 247, 280, 620, 866
SmoI CTYRAG 4 cut(s) 247, 280, 620, 866
SphI GCATGC 1 cut(s) 577
Sse9I AATT 3 cut(s) 237, 360, 932
SsiI CCGC 1 cut(s) 679
SspI AATATT 2 cut(s) 318, 439
SspMI CTAG 2 cut(s) 471, 506
SstI GAGCTC 2 cut(s) 357, 488
TaaI ACNGT 2 cut(s) 673, 784
TaqI TCGA 5 cut(s) 192, 281, 462, 664, 687
TaqII GACCGA 1 cut(s) 388
TasI AATT 3 cut(s) 237, 360, 932
TatI WGTACW 2 cut(s) 417, 823
TfiI GAWTC 2 cut(s) 322, 682
Tru1I TTAA 3 cut(s) 635, 647, 1035
Tru9I TTAA 3 cut(s) 635, 647, 1035
TscAI CASTG 5 cut(s) 472, 574, 612, 725, 763
TseFI GTSAC 2 cut(s) 49, 400
Tsp45I GTSAC 2 cut(s) 49, 400
TspDTI ATGAA 4 cut(s) 194, 230, 543, 785
TspRI CASTG 5 cut(s) 472, 574, 612, 725, 763
XapI RAATTY 1 cut(s) 360
XceI RCATGY 2 cut(s) 577, 598
XhoI CTCGAG 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 1001
XspI CTAG 2 cut(s) 471, 506
ZrmI AGTACT 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.