Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008455

Physical Location & Seq

Genomic Coordinates Reverse (-)

9715195 .. 9719020

Gene Structure 3826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17050.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCTTTCTTTCAGGGGGTTTTGGAGGAGGCATAAGAGGAAGGTGCTTGTTACAACTGGTGTATTAGGAGGTGGATATCTACTGTATAAACTATATAATGCTCACACTCAGAGGCTTGCTGACCTGGAGGCCGAACTCGCCCGCGAGCAAGAGAGCAGTGATGACCTCCTTAAGGCTAAAATGCAAGCTCATTTCGAGAGCATTCAGAGCATTGCTGATACAACTACGCTACCTCACGTGATGCACTATTTGAGTAGTCGGATAGCAGAAGAGTTAGATACTACGGACATCACAGAAAGGTTGATGCAAATGAAGGGGAAGTCTCCAGAAAAACTTGAATTGTGGGATAGATTAAAAGTTATAAGCTTCACGAGAATGGTGTTATCGTTGTGGGCAATGACGATGCTTAGCTTGTATATTAGAGTGCAAGTCAATATATTAGGGAGACATTTATACATTGATACTGCACGTGGTTTTGGAAGCTCTCTTATAGTTGAGGATGCTGAACTCATTGATAGGGACGACCAACAGAAGTTTCTAGCAAGTTCTGATTATCTGTCCACTTATGGCATGCCTTCTTTAATTCTACATATCCAGGCAGCAGCAATAGAAGTTCTTAATGGAAAGCAGCTAACCGATCGATTCAATACCGCAGTTCTCCGTGATACTATTATGCAAATACTTGACAAGTTCATGGGCACAGGAAGTCCCCATCACTGGGTGAACTACTTGATGCCTGAGGATGCTCGTTGGGCCGAACTAGCGACGGCCTTCAGCAGTGATAGCACAGTTCTTCCGGATGTCACCAAATTTGAACAACTTACGTTGGAGACACGGTCAGTGATATCAAGTGGTGAATTTGGGAATATTGCTGAGATGGCATTGAGAGCAGTGGTGGATACTGTGGTAGTAGATATGGGTGCTCAATCTGGAGGTGATCTATCGTCAGGAACACCTCTCGCGAAAGTTTTGGCAAGAGTTGCACAGATGGGGCCAACACTCCTTGGAGAATCAAGCAAATTCAGACAGATCATTCTAAATGTACCAGAAGTTGAGCTCTTTTTTACTCTCATATATTCACAGATGCAGATCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Peroxin-3

Protein Analysis

366

Amino Acids

41.03

Weight (kDa)

5.64

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peroxin-3	PF04882	22 - 123	2.7e-07	Peroxin-3
Peroxin-3	PF04882	125 - 375	4.6e-19	Peroxin-3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48635 AT1G48635 AT3G18160 AT3G18160 AT3G18160
fragaria_vesca	FvH4_5g17050 FvH4_5g17050
malus_domestica	MD00G1160600.v1.1 MD14G1233700.v1.1
prunus_persica	Prupe.5G229900_v2.0.a1
pyrus_communis	pycom06g19980 pycom14g19470
rosa_chinensis	RchiOBHm_Chr7g0178801
rosa_laevigata	RLG00000005415
rosa_multiflora	Rmu_sc0015029.1_g000004 Rmu_sc0025325.1_g000007
rosa_roxburghii	Rroxscaffold_3G00274600
rosa_rugosa	Rorug06G0419800
rosa_samantha	Rh7AG019100 Rh7BG018400 Rh7CG019200 Rh7DG019000
rosa_wichuraiana	Rw7G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
AccII	CGCG	2 cut(s)	144, 962
AccIII	TCCGGA	1 cut(s)	796
AciI	CCGC	2 cut(s)	142, 651
AcsI	RAATTY	3 cut(s)	809, 857, 1019
AcuI	CTGAAG	1 cut(s)	757
AcvI	CACGTG	2 cut(s)	238, 470
AdeI	CACNNNGTG	1 cut(s)	721
AfaI	GTAC	1 cut(s)	1044
AfiI	CCNNNNNNNGG	3 cut(s)	172, 717, 718
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	3 cut(s)	338, 646, 815
AjnI	CCWGG	2 cut(s)	123, 594
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	6 cut(s)	188, 366, 411, 483, 631, 1057
AluI	AGCT	6 cut(s)	188, 366, 411, 483, 631, 1057
Alw21I	GWGCWC	2 cut(s)	925, 1059
Alw26I	GTCTC	3 cut(s)	327, 439, 824
Aor13HI	TCCGGA	1 cut(s)	796
AoxI	GGCC	4 cut(s)	129, 753, 768, 992
ApeKI	GCWGC	3 cut(s)	599, 602, 628
ApoI	RAATTY	3 cut(s)	809, 857, 1019
AspS9I	GGNCC	2 cut(s)	753, 992
AsuHPI	GGTGA	4 cut(s)	733, 796, 866, 947
AxyI	CCTNAGG	1 cut(s)	738
BaeGI	GKGCMC	1 cut(s)	701
BaeI	ACNNNNGTAYC	2 cut(s)	891, 924
BanII	GRGCYC	1 cut(s)	1059
BauI	CACGAG	1 cut(s)	370
BbrPI	CACGTG	2 cut(s)	238, 470
Bbv12I	GWGCWC	2 cut(s)	925, 1059
BbvI	GCAGC	3 cut(s)	611, 614, 640
BccI	CCATC	3 cut(s)	720, 871, 982
BceAI	ACGGC	1 cut(s)	783
BciT130I	CCWGG	2 cut(s)	125, 596
BciVI	GTATCC	1 cut(s)	892
BcoDI	GTCTC	3 cut(s)	327, 439, 824
BfaI	CTAG	2 cut(s)	539, 761
BfrI	CTTAAG	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	892
BglII	AGATCT	1 cut(s)	1089
BisI	GCNGC	3 cut(s)	600, 603, 629
BlpI	GCTNAGC	1 cut(s)	407
BlsI	GCNGC	3 cut(s)	601, 604, 630
Bme1390I	CCNGG	2 cut(s)	125, 596
BmgT120I	GGNCC	2 cut(s)	753, 992
BmiI	GGNNCC	1 cut(s)	993
BmrFI	CCNGG	2 cut(s)	125, 596
BmrI	ACTGGG	1 cut(s)	727
BmsI	GCATC	7 cut(s)	231, 294, 393, 490, 723, 733, 1074
BmuI	ACTGGG	1 cut(s)	727
BpmI	CTGGAG	3 cut(s)	146, 309, 951
Bpu1102I	GCTNAGC	1 cut(s)	407
Bsa29I	ATCGAT	1 cut(s)	640
BsaAI	YACGTR	2 cut(s)	238, 470
BsaBI	GATNNNNATC	1 cut(s)	1088
BsaJI	CCNNGG	1 cut(s)	1003
BsaWI	WCCGGW	1 cut(s)	796
BsaXI	ACNNNNNCTCC	2 cut(s)	821, 851
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 717, 718
Bse1I	ACTGG	2 cut(s)	61, 722
Bse21I	CCTNAGG	1 cut(s)	738
Bse3DI	GCAATG	2 cut(s)	210, 402
Bse8I	GATNNNNATC	1 cut(s)	1088
BseAI	TCCGGA	1 cut(s)	796
BseBI	CCWGG	2 cut(s)	125, 596
BseCI	ATCGAT	1 cut(s)	640
BseDI	CCNNGG	1 cut(s)	1003
BseGI	GGATG	3 cut(s)	505, 748, 805
BseJI	GATNNNNATC	1 cut(s)	1088
BseLI	CCNNNNNNNGG	3 cut(s)	172, 717, 718
BseMI	GCAATG	2 cut(s)	210, 402
BseMII	CTCAG	3 cut(s)	122, 729, 864
BseNI	ACTGG	2 cut(s)	61, 722
BseRI	GAGGAG	1 cut(s)	40
BseSI	GKGCMC	1 cut(s)	701
BseXI	GCAGC	3 cut(s)	611, 614, 640
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	2 cut(s)	144, 962
Bsh1285I	CGRYCG	1 cut(s)	640
BshFI	GGCC	4 cut(s)	131, 755, 770, 994
BshVI	ATCGAT	1 cut(s)	640
BsiEI	CGRYCG	1 cut(s)	640
BsiHKAI	GWGCWC	2 cut(s)	925, 1059
BsiSI	CCGG	1 cut(s)	797
BslFI	GGGAC	2 cut(s)	533, 693
BslI	CCNNNNNNNGG	3 cut(s)	172, 717, 718
BsmAI	GTCTC	3 cut(s)	327, 439, 824
BsmFI	GGGAC	2 cut(s)	533, 693
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	4 cut(s)	131, 755, 770, 994
Bsp1286I	GDGCHC	3 cut(s)	701, 925, 1059
Bsp13I	TCCGGA	1 cut(s)	796
Bsp143I	GATC	4 cut(s)	637, 937, 1029, 1089
Bsp1720I	GCTNAGC	1 cut(s)	407
Bsp68I	TCGCGA	1 cut(s)	962
BspACI	CCGC	2 cut(s)	142, 651
BspANI	GGCC	4 cut(s)	131, 755, 770, 994
BspCNI	CTCAG	3 cut(s)	121, 730, 865
BspDI	ATCGAT	1 cut(s)	640
BspEI	TCCGGA	1 cut(s)	796
BspFNI	CGCG	2 cut(s)	144, 962
BspLI	GGNNCC	1 cut(s)	993
BspTI	CTTAAG	1 cut(s)	170
BsrDI	GCAATG	2 cut(s)	210, 402
BsrI	ACTGG	2 cut(s)	61, 722
BssECI	CCNNGG	1 cut(s)	1003
BssMI	GATC	4 cut(s)	637, 937, 1029, 1089
BssSI	CACGAG	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	1003
Bst2BI	CACGAG	1 cut(s)	370
Bst2UI	CCWGG	2 cut(s)	125, 596
Bst4CI	ACNGT	4 cut(s)	84, 790, 837, 904
Bst6I	CTCTTC	1 cut(s)	264
BstAFI	CTTAAG	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	980
BstBAI	YACGTR	2 cut(s)	238, 470
BstC8I	GCNNGC	5 cut(s)	117, 142, 146, 186, 572
BstDEI	CTNAG	4 cut(s)	108, 407, 738, 873
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	3 cut(s)	505, 748, 805
BstFNI	CGCG	2 cut(s)	144, 962
BstKTI	GATC	4 cut(s)	640, 940, 1032, 1092
BstMAI	GTCTC	3 cut(s)	327, 439, 824
BstMBI	GATC	4 cut(s)	637, 937, 1029, 1089
BstMCI	CGRYCG	1 cut(s)	640
BstMWI	GCNNNNNNNGC	8 cut(s)	137, 207, 752, 761, 783, 878, 887, 980
BstNI	CCWGG	2 cut(s)	125, 596
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	123, 594
BstSLI	GKGCMC	1 cut(s)	701
BstUI	CGCG	2 cut(s)	144, 962
BstV1I	GCAGC	3 cut(s)	611, 614, 640
BstX2I	RGATCY	1 cut(s)	1089
BstYI	RGATCY	1 cut(s)	1089
Bsu15I	ATCGAT	1 cut(s)	640
Bsu36I	CCTNAGG	1 cut(s)	738
BsuI	GTATCC	1 cut(s)	892
BsuRI	GGCC	4 cut(s)	131, 755, 770, 994
BsuTUI	ATCGAT	1 cut(s)	640
BtsCI	GGATG	3 cut(s)	505, 748, 805
BtsI	GCAGTG	3 cut(s)	163, 784, 897
BtsIMutI	CAGTG	5 cut(s)	163, 715, 784, 846, 897
BtuMI	TCGCGA	1 cut(s)	962
Cac8I	GCNNGC	5 cut(s)	117, 142, 146, 186, 572
Cfr13I	GGNCC	2 cut(s)	753, 992
ClaI	ATCGAT	1 cut(s)	640
Csp6I	GTAC	1 cut(s)	1043
CviAII	CATG	2 cut(s)	571, 694
CviQI	GTAC	1 cut(s)	1043
DdeI	CTNAG	4 cut(s)	108, 407, 738, 873
DpnI	GATC	4 cut(s)	639, 939, 1031, 1091
DpnII	GATC	4 cut(s)	637, 937, 1029, 1089
DraIII	CACNNNGTG	1 cut(s)	721
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Ecl136II	GAGCTC	1 cut(s)	1057
Eco130I	CCWWGG	1 cut(s)	1003
Eco24I	GRGCYC	1 cut(s)	1059
Eco32I	GATATC	2 cut(s)	77, 846
Eco53kI	GAGCTC	1 cut(s)	1057
Eco57I	CTGAAG	1 cut(s)	757
Eco72I	CACGTG	2 cut(s)	238, 470
Eco81I	CCTNAGG	1 cut(s)	738
EcoICRI	GAGCTC	1 cut(s)	1057
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	123, 594
EcoRV	GATATC	2 cut(s)	77, 846
EcoT14I	CCWWGG	1 cut(s)	1003
EcoT38I	GRGCYC	1 cut(s)	1059
ErhI	CCWWGG	1 cut(s)	1003
FaeI	CATG	2 cut(s)	574, 697
FaqI	GGGAC	2 cut(s)	533, 693
FatI	CATG	2 cut(s)	570, 693
FauI	CCCGC	1 cut(s)	149
Fnu4HI	GCNGC	3 cut(s)	600, 603, 629
FokI	GGATG	3 cut(s)	512, 755, 812
FriOI	GRGCYC	1 cut(s)	1059
Fsp4HI	GCNGC	3 cut(s)	600, 603, 629
FspBI	CTAG	2 cut(s)	539, 761
GluI	GCNGC	3 cut(s)	600, 603, 629
GsuI	CTGGAG	3 cut(s)	146, 309, 951
HaeIII	GGCC	4 cut(s)	131, 755, 770, 994
HapII	CCGG	1 cut(s)	797
Hin1II	CATG	2 cut(s)	574, 697
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	2 cut(s)	642, 1010
HpaII	CCGG	1 cut(s)	797
HphI	GGTGA	4 cut(s)	733, 796, 866, 947
Hpy166II	GTNNAC	2 cut(s)	561, 724
Hpy188I	TCNGA	5 cut(s)	111, 207, 261, 550, 1025
Hpy188III	TCNNGA	7 cut(s)	196, 326, 370, 797, 930, 948, 961
Hpy8I	GTNNAC	2 cut(s)	561, 724
Hpy99I	CGWCG	1 cut(s)	769
HpyAV	CCTTC	4 cut(s)	34, 307, 585, 781
HpyCH4III	ACNGT	4 cut(s)	84, 790, 837, 904
HpyCH4IV	ACGT	3 cut(s)	237, 469, 824
HpyCH4V	TGCA	8 cut(s)	184, 244, 307, 427, 467, 676, 983, 1087
HpyF10VI	GCNNNNNNNGC	8 cut(s)	137, 207, 752, 761, 783, 878, 887, 980
HpyF3I	CTNAG	4 cut(s)	108, 407, 738, 873
HpySE526I	ACGT	3 cut(s)	237, 469, 824
Hsp92II	CATG	2 cut(s)	574, 697
Kpn2I	TCCGGA	1 cut(s)	796
Kzo9I	GATC	4 cut(s)	637, 937, 1029, 1089
Lsp1109I	GCAGC	3 cut(s)	611, 614, 640
LweI	GCATC	7 cut(s)	231, 294, 393, 490, 723, 733, 1074
MaeI	CTAG	2 cut(s)	539, 761
MaeII	ACGT	3 cut(s)	237, 469, 824
MaeIII	GTNAC	2 cut(s)	49, 802
MalI	GATC	4 cut(s)	639, 939, 1031, 1091
MboI	GATC	4 cut(s)	637, 937, 1029, 1089
MboII	GAAGA	2 cut(s)	281, 785
MflI	RGATCY	1 cut(s)	1089
MhlI	GDGCHC	3 cut(s)	701, 925, 1059
MluCI	AATT	5 cut(s)	338, 582, 809, 857, 1019
MmeI	TCCRAC	2 cut(s)	239, 807
MroI	TCCGGA	1 cut(s)	796
MseI	TTAA	4 cut(s)	171, 353, 581, 618
MslI	CAYNNNNRTG	1 cut(s)	374
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	1 cut(s)	797
MspR9I	CCNGG	2 cut(s)	125, 596
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	2 cut(s)	125, 596
MvnI	CGCG	2 cut(s)	144, 962
MwoI	GCNNNNNNNGC	8 cut(s)	137, 207, 752, 761, 783, 878, 887, 980
NdeII	GATC	4 cut(s)	637, 937, 1029, 1089
NlaIII	CATG	2 cut(s)	574, 697
NlaIV	GGNNCC	1 cut(s)	993
NmuCI	GTSAC	1 cut(s)	802
NruI	TCGCGA	1 cut(s)	962
NspI	RCATGY	1 cut(s)	574
PaeI	GCATGC	1 cut(s)	574
PctI	GAATGC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	642, 1010
PflFI	GACNNNGTC	1 cut(s)	835
PkrI	GCNGC	3 cut(s)	601, 604, 630
Ple19I	CGATCG	1 cut(s)	640
PmaCI	CACGTG	2 cut(s)	238, 470
PmlI	CACGTG	2 cut(s)	238, 470
Ppu21I	YACGTR	2 cut(s)	238, 470
PsiI	TTATAA	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	1059
Psp6I	CCWGG	2 cut(s)	123, 594
PspCI	CACGTG	2 cut(s)	238, 470
PspGI	CCWGG	2 cut(s)	123, 594
PspN4I	GGNNCC	1 cut(s)	993
PspPI	GGNCC	2 cut(s)	753, 992
PsuI	RGATCY	1 cut(s)	1089
PsyI	GACNNNGTC	1 cut(s)	835
PvuI	CGATCG	1 cut(s)	640
RruI	TCGCGA	1 cut(s)	962
RsaI	GTAC	1 cut(s)	1044
RsaNI	GTAC	1 cut(s)	1043
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	1059
SaqAI	TTAA	4 cut(s)	171, 353, 581, 618
SatI	GCNGC	3 cut(s)	600, 603, 629
Sau3AI	GATC	4 cut(s)	637, 937, 1029, 1089
Sau96I	GGNCC	2 cut(s)	753, 992
ScrFI	CCNGG	2 cut(s)	125, 596
SduI	GDGCHC	3 cut(s)	701, 925, 1059
SfaNI	GCATC	7 cut(s)	231, 294, 393, 490, 723, 733, 1074
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SphI	GCATGC	1 cut(s)	574
Sse9I	AATT	5 cut(s)	338, 582, 809, 857, 1019
SsiI	CCGC	2 cut(s)	142, 651
SspI	AATATT	1 cut(s)	868
SspMI	CTAG	2 cut(s)	539, 761
SstI	GAGCTC	1 cut(s)	1059
StyD4I	CCNGG	2 cut(s)	123, 594
StyI	CCWWGG	1 cut(s)	1003
TaaI	ACNGT	4 cut(s)	84, 790, 837, 904
TaiI	ACGT	3 cut(s)	240, 472, 827
TaqI	TCGA	2 cut(s)	195, 640
TasI	AATT	5 cut(s)	338, 582, 809, 857, 1019
TfiI	GAWTC	2 cut(s)	642, 1010
Tru1I	TTAA	4 cut(s)	171, 353, 581, 618
Tru9I	TTAA	4 cut(s)	171, 353, 581, 618
TscAI	CASTG	5 cut(s)	163, 722, 784, 846, 897
TseFI	GTSAC	1 cut(s)	802
TseI	GCWGC	3 cut(s)	599, 602, 628
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	2 cut(s)	326, 682
TspGWI	ACGGA	2 cut(s)	299, 650
TspRI	CASTG	5 cut(s)	163, 722, 784, 846, 897
Tth111I	GACNNNGTC	1 cut(s)	835
Vha464I	CTTAAG	1 cut(s)	170
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	3 cut(s)	809, 857, 1019
XceI	RCATGY	1 cut(s)	574
XspI	CTAG	2 cut(s)	539, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.