MD00G1160600.v1.1

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0008455
Physical Location & Seq
Reverse (-)
35675405 .. 35679201
3797 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1160600.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGCTTTCTTTAAGGGGATTTTGGAGAAGGCATAAGAGGAAGGTTTTGGTTGCAACTGGTGTTTTAGGAAGTGGGTATCTTCTGTACAAATTGTACAATGCCCACAGACAAAGGCTTGTTGACCTGGAGACTGAGCTCGAGCACGAGCGAGAGAAAAACGATGAGCTCATCAAGGCTCAAATGCAGGCCCATTTTGAAAACATACAAAGAATTGCTGATACAACTACACTGCCGCATGCTATGTACTATTTAAGTAGTCGGATAGCGGAAGAGTTGGACCTTTCTCACCTTACTGAGAGGTTAATGCAAGTGAAGGGGCAACCGACATCTCAAGAGAAACTTGAGTTATGGGATAGACTGAAAATTCTAAGTTTCACGAGAATGGTGTTGTCGCTGTGGGCAATGACGATCCTTAACTTATATATTAGAGTTCAAGTCAATATATTAGGGAGACATTTATATATTGATACTGCACGAGGTCTTGGGAGCTCTCTTTTAATTGAGGATGCTGATCTCATTCATAGGGATGACCAGCAGAAGTTTCTCGCAAGTTCTGATTATCTCGCCAGTAATGCCTTGCCTGCTTTAATTTCAAATATCCAGGCAGCAGCAACAGAAGTTCTTAATGGAAAGCAGCTAAAGGATTCTTTCAACACCACAGTTCTTCATGCAACTATCATGGAAATACTTGAAAAGTTCATGAGCACAGGAGATCCCCATCACTGGGTGAACTACTTGATGCCTGAGGATGCTCGTTGGCATGAACTAGCCACTGCCTTCAGCAATGATAACATACCTCTTCCAGATGTCACCAAATTTGACCAACTTATGTTGGAGACACGGGCAGTAATATCAAGTGCTGAATTCAGGAGTGTTGCCGATACAGCGTTGAGAGCAGTGGTGGATACCGTGATAGAAGATATGAATGCTCAACCTGGAGGAGGCAGTCTAAAGTCAGGAATTCAACTTGCCAAAGTTTTAGCACGGGTTGCACAGACGGGTCCTTCGGTCCTCGAAGAATCAAGCAAGTTCATCCAGATCATTCTGAATGTACCACAAGTTGAGCTCTTTTTCACTCTCATCTACTCAAACATGAAAATAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Peroxin-3

Protein Analysis

369

Amino Acids

41.79

Weight (kDa)

5.97

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peroxin-3 PF04882 107 - 364 1.4e-24 Peroxin-3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 233, 266
AclWI GGATC 2 cut(s) 403, 707
AcsI RAATTY 4 cut(s) 363, 815, 863, 960
AcuI CTGAAG 1 cut(s) 763
AdeI CACNNNGTG 1 cut(s) 727
AfaI GTAC 4 cut(s) 86, 95, 245, 1053
AfiI CCNNNNNNNGG 3 cut(s) 723, 724, 941
AgsI TTSAA 6 cut(s) 197, 434, 594, 652, 692, 965
AjnI CCWGG 3 cut(s) 123, 600, 934
AluBI AGCT 5 cut(s) 136, 166, 489, 637, 1066
AluI AGCT 5 cut(s) 136, 166, 489, 637, 1066
Alw21I GWGCWC 6 cut(s) 138, 144, 168, 491, 707, 1068
Alw26I GTCTC 3 cut(s) 122, 445, 830
AlwI GGATC 2 cut(s) 403, 707
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 3 cut(s) 605, 608, 634
ApoI RAATTY 4 cut(s) 363, 815, 863, 960
ArsI GACNNNNNNTTYG 2 cut(s) 988, 1020
AspS9I GGNCC 4 cut(s) 187, 277, 1001, 1009
AsuHPI GGTGA 3 cut(s) 278, 739, 802
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 3 cut(s) 277, 1001, 1009
AxyI CCTNAGG 1 cut(s) 744
BanII GRGCYC 4 cut(s) 138, 168, 491, 1068
BauI CACGAG 3 cut(s) 143, 376, 474
Bbv12I GWGCWC 6 cut(s) 138, 144, 168, 491, 707, 1068
BbvI GCAGC 3 cut(s) 617, 620, 646
BccI CCATC 1 cut(s) 726
BciT130I CCWGG 3 cut(s) 125, 602, 936
BciVI GTATCC 1 cut(s) 898
BcoDI GTCTC 3 cut(s) 122, 445, 830
BfaI CTAG 2 cut(s) 767, 1105
BfuI GTATCC 1 cut(s) 898
BisI GCNGC 4 cut(s) 233, 606, 609, 635
BlsI GCNGC 4 cut(s) 234, 607, 610, 636
Bme1390I CCNGG 3 cut(s) 125, 602, 936
Bme18I GGWCC 3 cut(s) 277, 1001, 1009
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 4 cut(s) 187, 277, 1001, 1009
BmiI GGNNCC 1 cut(s) 1002
BmrFI CCNGG 3 cut(s) 125, 602, 936
BmrI ACTGGG 1 cut(s) 733
BmsI GCATC 3 cut(s) 496, 729, 739
BmuI ACTGGG 1 cut(s) 733
BpmI CTGGAG 2 cut(s) 146, 957
BpuEI CTTGAG 2 cut(s) 315, 362
BsaBI GATNNNNATC 2 cut(s) 510, 717
Bsc4I CCNNNNNNNGG 3 cut(s) 723, 724, 941
Bse1I ACTGG 3 cut(s) 61, 567, 728
Bse21I CCTNAGG 1 cut(s) 744
Bse3DI GCAATG 2 cut(s) 408, 790
Bse8I GATNNNNATC 2 cut(s) 510, 717
BseBI CCWGG 3 cut(s) 125, 602, 936
BseGI GGATG 4 cut(s) 511, 532, 754, 1032
BseJI GATNNNNATC 2 cut(s) 510, 717
BseLI CCNNNNNNNGG 3 cut(s) 723, 724, 941
BseMI GCAATG 2 cut(s) 408, 790
BseMII CTCAG 3 cut(s) 123, 285, 735
BseNI ACTGG 3 cut(s) 61, 567, 728
BseRI GAGGAG 1 cut(s) 954
BseXI GCAGC 3 cut(s) 617, 620, 646
BsgI GTGCAG 1 cut(s) 456
BshFI GGCC 1 cut(s) 188
BsiHKAI GWGCWC 6 cut(s) 138, 144, 168, 491, 707, 1068
BsiHKCI CYCGRG 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 723, 724, 941
BsmAI GTCTC 3 cut(s) 122, 445, 830
BsmI GAATGC 1 cut(s) 931
BsnI GGCC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 6 cut(s) 138, 144, 168, 491, 707, 1068
Bsp1407I TGTACA 2 cut(s) 84, 93
Bsp143I GATC 4 cut(s) 408, 511, 712, 1038
BspACI CCGC 2 cut(s) 233, 266
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 3 cut(s) 124, 286, 736
BspHI TCATGA 1 cut(s) 699
BspLI GGNNCC 1 cut(s) 1002
BspPI GGATC 2 cut(s) 403, 707
BsrDI GCAATG 2 cut(s) 408, 790
BsrGI TGTACA 2 cut(s) 84, 93
BsrI ACTGG 3 cut(s) 61, 567, 728
BssMI GATC 4 cut(s) 408, 511, 712, 1038
BssSI CACGAG 3 cut(s) 143, 376, 474
Bst2BI CACGAG 3 cut(s) 143, 376, 474
Bst2UI CCWGG 3 cut(s) 125, 602, 936
Bst4CI ACNGT 2 cut(s) 661, 910
Bst6I CTCTTC 2 cut(s) 264, 804
BstAPI GCANNNNNTGC 1 cut(s) 989
BstAUI TGTACA 2 cut(s) 84, 93
BstC8I GCNNGC 3 cut(s) 186, 237, 582
BstDEI CTNAG 4 cut(s) 132, 294, 368, 744
BstENI CCTNNNNNAGG 1 cut(s) 939
BstF5I GGATG 4 cut(s) 511, 532, 754, 1032
BstKTI GATC 4 cut(s) 411, 514, 715, 1041
BstMAI GTCTC 3 cut(s) 122, 445, 830
BstMBI GATC 4 cut(s) 408, 511, 712, 1038
BstMWI GCNNNNNNNGC 5 cut(s) 572, 581, 884, 893, 989
BstNI CCWGG 3 cut(s) 125, 602, 936
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 3 cut(s) 123, 600, 934
BstV1I GCAGC 3 cut(s) 617, 620, 646
BstX2I RGATCY 1 cut(s) 712
BstYI RGATCY 1 cut(s) 712
Bsu36I CCTNAGG 1 cut(s) 744
BsuI GTATCC 1 cut(s) 898
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 4 cut(s) 511, 532, 754, 1032
BtsI GCAGTG 3 cut(s) 227, 771, 903
BtsIMutI CAGTG 4 cut(s) 227, 721, 771, 903
Cac8I GCNNGC 3 cut(s) 186, 237, 582
CciI TCATGA 1 cut(s) 699
Cfr13I GGNCC 4 cut(s) 187, 277, 1001, 1009
Csp6I GTAC 4 cut(s) 85, 94, 244, 1052
CviAII CATG 6 cut(s) 236, 668, 679, 700, 761, 1093
CviJI RGCY 9 cut(s) 115, 136, 166, 176, 188, 489, 637, 770, 1066
CviKI_1 RGCY 9 cut(s) 115, 136, 166, 176, 188, 489, 637, 770, 1066
CviQI GTAC 4 cut(s) 85, 94, 244, 1052
DdeI CTNAG 4 cut(s) 132, 294, 368, 744
DpnI GATC 4 cut(s) 410, 513, 714, 1040
DpnII GATC 4 cut(s) 408, 511, 712, 1038
DraIII CACNNNGTG 1 cut(s) 727
Eam1104I CTCTTC 2 cut(s) 264, 804
EarI CTCTTC 2 cut(s) 264, 804
Ecl136II GAGCTC 4 cut(s) 136, 166, 489, 1066
Eco24I GRGCYC 4 cut(s) 138, 168, 491, 1068
Eco47I GGWCC 3 cut(s) 277, 1001, 1009
Eco53kI GAGCTC 4 cut(s) 136, 166, 489, 1066
Eco57I CTGAAG 1 cut(s) 763
Eco81I CCTNAGG 1 cut(s) 744
Eco88I CYCGRG 1 cut(s) 137
EcoICRI GAGCTC 4 cut(s) 136, 166, 489, 1066
EcoNI CCTNNNNNAGG 1 cut(s) 939
EcoO109I RGGNCCY 1 cut(s) 1001
EcoRI GAATTC 2 cut(s) 863, 960
EcoRII CCWGG 3 cut(s) 123, 600, 934
EcoT38I GRGCYC 4 cut(s) 138, 168, 491, 1068
FaeI CATG 6 cut(s) 239, 671, 682, 703, 764, 1096
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FatI CATG 6 cut(s) 235, 667, 678, 699, 760, 1092
Fnu4HI GCNGC 4 cut(s) 233, 606, 609, 635
FokI GGATG 4 cut(s) 518, 539, 761, 1019
FriOI GRGCYC 4 cut(s) 138, 168, 491, 1068
Fsp4HI GCNGC 4 cut(s) 233, 606, 609, 635
FspBI CTAG 2 cut(s) 767, 1105
GluI GCNGC 4 cut(s) 233, 606, 609, 635
GsuI CTGGAG 2 cut(s) 146, 957
HaeIII GGCC 1 cut(s) 188
Hin1II CATG 6 cut(s) 239, 671, 682, 703, 764, 1096
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 2 cut(s) 644, 1019
HphI GGTGA 3 cut(s) 278, 739, 802
Hpy166II GTNNAC 2 cut(s) 121, 730
Hpy188I TCNGA 3 cut(s) 261, 556, 1047
Hpy188III TCNNGA 7 cut(s) 332, 376, 700, 803, 868, 957, 1036
Hpy8I GTNNAC 2 cut(s) 121, 730
HpyAV CCTTC 5 cut(s) 21, 34, 307, 787, 1014
HpyCH4III ACNGT 2 cut(s) 661, 910
HpyCH4V TGCA 6 cut(s) 53, 184, 307, 473, 671, 992
HpyF10VI GCNNNNNNNGC 5 cut(s) 572, 581, 884, 893, 989
HpyF3I CTNAG 4 cut(s) 132, 294, 368, 744
Hsp92II CATG 6 cut(s) 239, 671, 682, 703, 764, 1096
Kzo9I GATC 4 cut(s) 408, 511, 712, 1038
LmnI GCTCC 1 cut(s) 486
Lsp1109I GCAGC 3 cut(s) 617, 620, 646
LweI GCATC 3 cut(s) 496, 729, 739
MaeI CTAG 2 cut(s) 767, 1105
MaeIII GTNAC 1 cut(s) 808
MalI GATC 4 cut(s) 410, 513, 714, 1040
MboI GATC 4 cut(s) 408, 511, 712, 1038
MboII GAAGA 6 cut(s) 71, 281, 656, 791, 929, 1028
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 6 cut(s) 138, 144, 168, 491, 707, 1068
MluCI AATT 8 cut(s) 89, 210, 363, 498, 588, 815, 863, 960
MmeI TCCRAC 3 cut(s) 239, 255, 813
MnlI CCTC 9 cut(s) 30, 291, 470, 496, 739, 807, 932, 935, 1022
MseI TTAA 7 cut(s) 11, 251, 302, 414, 497, 587, 624
MslI CAYNNNNRTG 2 cut(s) 380, 525
MspR9I CCNGG 3 cut(s) 125, 602, 936
Mva1269I GAATGC 1 cut(s) 931
MvaI CCWGG 3 cut(s) 125, 602, 936
MwoI GCNNNNNNNGC 5 cut(s) 572, 581, 884, 893, 989
NdeII GATC 4 cut(s) 408, 511, 712, 1038
NlaIII CATG 6 cut(s) 239, 671, 682, 703, 764, 1096
NlaIV GGNNCC 1 cut(s) 1002
NmuCI GTSAC 1 cut(s) 808
NspI RCATGY 1 cut(s) 239
PaeI GCATGC 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 137
PagI TCATGA 1 cut(s) 699
PctI GAATGC 1 cut(s) 931
PfeI GAWTC 2 cut(s) 644, 1019
PkrI GCNGC 4 cut(s) 234, 607, 610, 636
PpuMI RGGWCCY 1 cut(s) 1001
Psp124BI GAGCTC 4 cut(s) 138, 168, 491, 1068
Psp5II RGGWCCY 1 cut(s) 1001
Psp6I CCWGG 3 cut(s) 123, 600, 934
PspGI CCWGG 3 cut(s) 123, 600, 934
PspN4I GGNNCC 1 cut(s) 1002
PspPI GGNCC 4 cut(s) 187, 277, 1001, 1009
PspPPI RGGWCCY 1 cut(s) 1001
PspXI VCTCGAGB 1 cut(s) 137
PsuI RGATCY 1 cut(s) 712
RsaI GTAC 4 cut(s) 86, 95, 245, 1053
RsaNI GTAC 4 cut(s) 85, 94, 244, 1052
RseI CAYNNNNRTG 2 cut(s) 380, 525
SacI GAGCTC 4 cut(s) 138, 168, 491, 1068
SaqAI TTAA 7 cut(s) 11, 251, 302, 414, 497, 587, 624
SatI GCNGC 4 cut(s) 233, 606, 609, 635
Sau3AI GATC 4 cut(s) 408, 511, 712, 1038
Sau96I GGNCC 4 cut(s) 187, 277, 1001, 1009
ScrFI CCNGG 3 cut(s) 125, 602, 936
SduI GDGCHC 6 cut(s) 138, 144, 168, 491, 707, 1068
SfaNI GCATC 3 cut(s) 496, 729, 739
Sfr274I CTCGAG 1 cut(s) 137
SinI GGWCC 3 cut(s) 277, 1001, 1009
SlaI CTCGAG 1 cut(s) 137
SmiMI CAYNNNNRTG 2 cut(s) 380, 525
SmlI CTYRAG 3 cut(s) 137, 330, 341
SmoI CTYRAG 3 cut(s) 137, 330, 341
SphI GCATGC 1 cut(s) 239
Sse9I AATT 8 cut(s) 89, 210, 363, 498, 588, 815, 863, 960
SsiI CCGC 2 cut(s) 233, 266
SspMI CTAG 2 cut(s) 767, 1105
SstI GAGCTC 4 cut(s) 138, 168, 491, 1068
StyD4I CCNGG 3 cut(s) 123, 600, 934
TaaI ACNGT 2 cut(s) 661, 910
TaqI TCGA 2 cut(s) 138, 1014
TaqII GACCGA 1 cut(s) 997
TasI AATT 8 cut(s) 89, 210, 363, 498, 588, 815, 863, 960
TatI WGTACW 3 cut(s) 84, 93, 243
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 2 cut(s) 644, 1019
Tru1I TTAA 7 cut(s) 11, 251, 302, 414, 497, 587, 624
Tru9I TTAA 7 cut(s) 11, 251, 302, 414, 497, 587, 624
TscAI CASTG 4 cut(s) 234, 728, 778, 903
TseFI GTSAC 1 cut(s) 808
TseI GCWGC 3 cut(s) 605, 608, 634
Tsp45I GTSAC 1 cut(s) 808
TspDTI ATGAA 6 cut(s) 509, 656, 688, 777, 938, 1021
TspRI CASTG 4 cut(s) 234, 728, 778, 903
VpaK11BI GGWCC 3 cut(s) 277, 1001, 1009
XagI CCTNNNNNAGG 1 cut(s) 939
XapI RAATTY 4 cut(s) 363, 815, 863, 960
XceI RCATGY 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 137
XspI CTAG 2 cut(s) 767, 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.