Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008455

Physical Location & Seq

Genomic Coordinates Reverse (-)

31369592 .. 31373826

Gene Structure 4235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1233700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGCTTTCTTTAAGGGGATTTTGGAGAAGGCATAAGAGGAAGATTGTTGTTGCAACTGGTGTTTTAGGAAGTGGGTATCTTCTGTATACATTATACAATGCTCACAGACAAAAGCTTGCTGACATGGAGACTGAACTCGAGCAAGAGCGAGAGAAAAACGATGAGCTCATCAAGGCTCAAATGCAGGCCCATTTTGAGAACATACAAAGAATTGCTGATACAACTACACTGCCTCATGCTATGCACTATTTAAATAGTCGGATAGCTGAAGAGTTGGACCTTTCTCACCTTACCGAGAGGTTAATGCAAGTGAAGGGGCAACCGACATCTCAAGAGAAACTTGAGTTATGGGATAGACTGAAAATTCTAAGTTTCACGAGAATGGTGTTGTCTCTGTGGACGATGACGATCCTTAGCTTATACATTAGAGTTCAAGTCAATATATTAGGGAGACATTTATATATTGATACTGCACGTGGTCTTGGAAGCTCTCTTTTAATTGAGGATGCTGACCTCATTCATAGGGATGACCAGCAGAAGTTTCTCGCAAGTTCTGATTATCTCCCCAGTAATGCCTTGCCTGCTTTAATTTCAAATATCCAGGCAGCAGCAACAGAAGTTCTTAATGGAATGCAGCTGAAGGATTCCTTCAACACCACAATTCTTCGTGCAACTATCATAGAAATACTTGAAAAGTTCATGACCACAGGAGAGCCCTATCACTGGGTGAACTACTTGATGTCTGAGGATGCTCGTTGGCATGAACTAGCCACAGCCTTTGGCGATGATAACACACCTCTTCCAGATGTCACCAAATTTGACCAACTTATGTTGGAGACACGGGCAGTAATATCAAGTGCTGAATTCGGGAGTGTCGCTGAGACAGCATTGAGAGCAGTGGTGGATACCGTAATAGAAGATATGAGTGCTCAACCTGGAGGAGGCAGTCTAAAGTCGGGAATTCAACTTGCCAAAGTTTTAGCACGGGTTGCACAGACGGGTCCTGCTCTCCTCGAAGAATCAAGCAAGTTCATCCGGATCATTCTAAATGTACCACAAGTTGAGCTCTTTTTCACTCTCATCTACTCAAACATGCAAATCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Peroxin-3

Protein Analysis

369

Amino Acids

41.65

Weight (kDa)

5.63

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peroxin-3	PF04882	7 - 110	4.3e-07	Peroxin-3
Peroxin-3	PF04882	107 - 364	4.5e-23	Peroxin-3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48635 AT1G48635 AT3G18160 AT3G18160 AT3G18160
fragaria_vesca	FvH4_5g17050 FvH4_5g17050
malus_domestica	MD00G1160600.v1.1 MD14G1233700.v1.1
prunus_persica	Prupe.5G229900_v2.0.a1
pyrus_communis	pycom06g19980 pycom14g19470
rosa_chinensis	RchiOBHm_Chr7g0178801
rosa_laevigata	RLG00000005415
rosa_multiflora	Rmu_sc0015029.1_g000004 Rmu_sc0025325.1_g000007
rosa_roxburghii	Rroxscaffold_3G00274600
rosa_rugosa	Rorug06G0419800
rosa_samantha	Rh7AG019100 Rh7BG018400 Rh7CG019200 Rh7DG019000
rosa_wichuraiana	Rw7G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	1035
AclWI	GGATC	2 cut(s)	403, 1046
AcsI	RAATTY	4 cut(s)	363, 815, 863, 960
AcuI	CTGAAG	2 cut(s)	288, 659
AcvI	CACGTG	1 cut(s)	476
AdeI	CACNNNGTG	1 cut(s)	727
AfaI	GTAC	1 cut(s)	1053
AfiI	CCNNNNNNNGG	2 cut(s)	723, 941
AgsI	TTSAA	5 cut(s)	434, 594, 652, 692, 965
AjnI	CCWGG	2 cut(s)	600, 934
AluBI	AGCT	7 cut(s)	115, 166, 266, 417, 489, 637, 1066
AluI	AGCT	7 cut(s)	115, 166, 266, 417, 489, 637, 1066
Alw21I	GWGCWC	3 cut(s)	168, 931, 1068
Alw26I	GTCTC	5 cut(s)	122, 396, 445, 830, 875
AlwI	GGATC	2 cut(s)	403, 1046
Ama87I	CYCGRG	1 cut(s)	137
Aor13HI	TCCGGA	1 cut(s)	1035
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	3 cut(s)	605, 608, 634
ApoI	RAATTY	4 cut(s)	363, 815, 863, 960
AspS9I	GGNCC	3 cut(s)	187, 277, 1001
AsuHPI	GGTGA	3 cut(s)	278, 739, 802
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	277, 1001
BanII	GRGCYC	3 cut(s)	168, 717, 1068
BauI	CACGAG	1 cut(s)	376
BbrPI	CACGTG	1 cut(s)	476
Bbv12I	GWGCWC	3 cut(s)	168, 931, 1068
BbvI	GCAGC	3 cut(s)	617, 620, 646
BciT130I	CCWGG	2 cut(s)	602, 936
BciVI	GTATCC	1 cut(s)	898
BcoDI	GTCTC	5 cut(s)	122, 396, 445, 830, 875
BfaI	CTAG	1 cut(s)	767
BfuI	GTATCC	1 cut(s)	898
BisI	GCNGC	3 cut(s)	606, 609, 635
BlsI	GCNGC	3 cut(s)	607, 610, 636
Bme1390I	CCNGG	2 cut(s)	602, 936
Bme18I	GGWCC	2 cut(s)	277, 1001
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	3 cut(s)	187, 277, 1001
BmiI	GGNNCC	1 cut(s)	1002
BmrFI	CCNGG	2 cut(s)	602, 936
BmrI	ACTGGG	2 cut(s)	561, 733
BmsI	GCATC	2 cut(s)	496, 739
BmuI	ACTGGG	2 cut(s)	561, 733
BpmI	CTGGAG	1 cut(s)	957
Bpu10I	CCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	2 cut(s)	315, 362
BsaAI	YACGTR	1 cut(s)	476
BsaBI	GATNNNNATC	1 cut(s)	407
BsaWI	WCCGGW	1 cut(s)	1035
Bsc4I	CCNNNNNNNGG	2 cut(s)	723, 941
Bse1I	ACTGG	3 cut(s)	61, 567, 728
Bse8I	GATNNNNATC	1 cut(s)	407
BseAI	TCCGGA	1 cut(s)	1035
BseBI	CCWGG	2 cut(s)	602, 936
BseGI	GGATG	4 cut(s)	511, 532, 754, 1032
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	2 cut(s)	723, 941
BseMII	CTCAG	2 cut(s)	735, 870
BseNI	ACTGG	3 cut(s)	61, 567, 728
BseRI	GAGGAG	2 cut(s)	954, 1001
BseXI	GCAGC	3 cut(s)	617, 620, 646
BsgI	GTGCAG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	188
BsiHKAI	GWGCWC	3 cut(s)	168, 931, 1068
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	1036
BslI	CCNNNNNNNGG	2 cut(s)	723, 941
BsmAI	GTCTC	5 cut(s)	122, 396, 445, 830, 875
BsmI	GAATGC	1 cut(s)	636
BsnI	GGCC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	4 cut(s)	168, 717, 931, 1068
Bsp13I	TCCGGA	1 cut(s)	1035
Bsp143I	GATC	2 cut(s)	408, 1038
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	736, 871
BspEI	TCCGGA	1 cut(s)	1035
BspHI	TCATGA	1 cut(s)	699
BspLI	GGNNCC	1 cut(s)	1002
BspPI	GGATC	2 cut(s)	403, 1046
BsrI	ACTGG	3 cut(s)	61, 567, 728
BssMI	GATC	2 cut(s)	408, 1038
BssNAI	GTATAC	1 cut(s)	87
BssSI	CACGAG	1 cut(s)	376
Bst1107I	GTATAC	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	376
Bst2UI	CCWGG	2 cut(s)	602, 936
Bst4CI	ACNGT	1 cut(s)	910
Bst6I	CTCTTC	2 cut(s)	264, 804
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstBAI	YACGTR	1 cut(s)	476
BstC8I	GCNNGC	3 cut(s)	117, 186, 582
BstDEI	CTNAG	4 cut(s)	368, 413, 744, 879
BstENI	CCTNNNNNAGG	1 cut(s)	939
BstF5I	GGATG	4 cut(s)	511, 532, 754, 1032
BstKTI	GATC	2 cut(s)	411, 1041
BstMAI	GTCTC	5 cut(s)	122, 396, 445, 830, 875
BstMBI	GATC	2 cut(s)	408, 1038
BstMWI	GCNNNNNNNGC	4 cut(s)	581, 884, 893, 989
BstNI	CCWGG	2 cut(s)	602, 936
BstNSI	RCATGY	1 cut(s)	1096
BstSCI	CCNGG	2 cut(s)	600, 934
BstV1I	GCAGC	3 cut(s)	617, 620, 646
BstZ17I	GTATAC	1 cut(s)	87
BsuI	GTATCC	1 cut(s)	898
BsuRI	GGCC	1 cut(s)	188
BtgZI	GCGATG	1 cut(s)	798
BtsCI	GGATG	4 cut(s)	511, 532, 754, 1032
BtsI	GCAGTG	2 cut(s)	227, 903
BtsIMutI	CAGTG	3 cut(s)	227, 721, 903
Cac8I	GCNNGC	3 cut(s)	117, 186, 582
CciI	TCATGA	1 cut(s)	699
Cfr13I	GGNCC	3 cut(s)	187, 277, 1001
Csp6I	GTAC	1 cut(s)	1052
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CviAII	CATG	5 cut(s)	124, 236, 700, 761, 1093
CviQI	GTAC	1 cut(s)	1052
DdeI	CTNAG	4 cut(s)	368, 413, 744, 879
DpnI	GATC	2 cut(s)	410, 1040
DpnII	GATC	2 cut(s)	408, 1038
DraI	TTTAAA	1 cut(s)	252
DraIII	CACNNNGTG	1 cut(s)	727
Eam1104I	CTCTTC	2 cut(s)	264, 804
EarI	CTCTTC	2 cut(s)	264, 804
Ecl136II	GAGCTC	2 cut(s)	166, 1066
Eco24I	GRGCYC	3 cut(s)	168, 717, 1068
Eco47I	GGWCC	2 cut(s)	277, 1001
Eco53kI	GAGCTC	2 cut(s)	166, 1066
Eco57I	CTGAAG	2 cut(s)	288, 659
Eco72I	CACGTG	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	2 cut(s)	166, 1066
EcoNI	CCTNNNNNAGG	1 cut(s)	939
EcoO109I	RGGNCCY	1 cut(s)	1001
EcoRI	GAATTC	2 cut(s)	863, 960
EcoRII	CCWGG	2 cut(s)	600, 934
EcoT38I	GRGCYC	3 cut(s)	168, 717, 1068
FaeI	CATG	5 cut(s)	127, 239, 703, 764, 1096
FalI	AAGNNNNNCTT	4 cut(s)	324, 356, 632, 664
FatI	CATG	5 cut(s)	123, 235, 699, 760, 1092
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	3 cut(s)	606, 609, 635
FokI	GGATG	4 cut(s)	518, 539, 761, 1019
FriOI	GRGCYC	3 cut(s)	168, 717, 1068
Fsp4HI	GCNGC	3 cut(s)	606, 609, 635
FspBI	CTAG	1 cut(s)	767
GluI	GCNGC	3 cut(s)	606, 609, 635
GsuI	CTGGAG	1 cut(s)	957
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	1 cut(s)	1036
Hin1II	CATG	5 cut(s)	127, 239, 703, 764, 1096
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	2 cut(s)	644, 1019
HpaII	CCGG	1 cut(s)	1036
HphI	GGTGA	3 cut(s)	278, 739, 802
Hpy166II	GTNNAC	3 cut(s)	87, 399, 730
Hpy188I	TCNGA	3 cut(s)	261, 556, 745
Hpy188III	TCNNGA	7 cut(s)	332, 376, 700, 803, 868, 957, 1036
Hpy8I	GTNNAC	3 cut(s)	87, 399, 730
HpyAV	CCTTC	4 cut(s)	21, 307, 634, 658
HpyCH4III	ACNGT	1 cut(s)	910
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	9 cut(s)	53, 184, 244, 307, 473, 634, 671, 992, 1096
HpyF10VI	GCNNNNNNNGC	4 cut(s)	581, 884, 893, 989
HpyF3I	CTNAG	4 cut(s)	368, 413, 744, 879
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	5 cut(s)	127, 239, 703, 764, 1096
Kpn2I	TCCGGA	1 cut(s)	1035
Kzo9I	GATC	2 cut(s)	408, 1038
Lsp1109I	GCAGC	3 cut(s)	617, 620, 646
LweI	GCATC	2 cut(s)	496, 739
MaeI	CTAG	1 cut(s)	767
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	1 cut(s)	808
MalI	GATC	2 cut(s)	410, 1040
MboI	GATC	2 cut(s)	408, 1038
MboII	GAAGA	7 cut(s)	52, 71, 281, 656, 791, 929, 1028
MhlI	GDGCHC	4 cut(s)	168, 717, 931, 1068
MluCI	AATT	8 cut(s)	210, 363, 498, 588, 660, 815, 863, 960
MmeI	TCCRAC	3 cut(s)	239, 255, 813
MroI	TCCGGA	1 cut(s)	1035
MseI	TTAA	6 cut(s)	11, 251, 302, 497, 587, 624
MslI	CAYNNNNRTG	2 cut(s)	380, 525
MspA1I	CMGCKG	1 cut(s)	637
MspI	CCGG	1 cut(s)	1036
MspR9I	CCNGG	2 cut(s)	602, 936
Mva1269I	GAATGC	1 cut(s)	636
MvaI	CCWGG	2 cut(s)	602, 936
MwoI	GCNNNNNNNGC	4 cut(s)	581, 884, 893, 989
NdeII	GATC	2 cut(s)	408, 1038
NlaIII	CATG	5 cut(s)	127, 239, 703, 764, 1096
NlaIV	GGNNCC	1 cut(s)	1002
NmuCI	GTSAC	1 cut(s)	808
NspI	RCATGY	1 cut(s)	1096
PaeR7I	CTCGAG	1 cut(s)	137
PagI	TCATGA	1 cut(s)	699
PctI	GAATGC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	644, 1019
PkrI	GCNGC	3 cut(s)	607, 610, 636
PmaCI	CACGTG	1 cut(s)	476
PmlI	CACGTG	1 cut(s)	476
Ppu21I	YACGTR	1 cut(s)	476
PpuMI	RGGWCCY	1 cut(s)	1001
Psp124BI	GAGCTC	2 cut(s)	168, 1068
Psp5II	RGGWCCY	1 cut(s)	1001
Psp6I	CCWGG	2 cut(s)	600, 934
PspCI	CACGTG	1 cut(s)	476
PspGI	CCWGG	2 cut(s)	600, 934
PspN4I	GGNNCC	1 cut(s)	1002
PspPI	GGNCC	3 cut(s)	187, 277, 1001
PspPPI	RGGWCCY	1 cut(s)	1001
PspXI	VCTCGAGB	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	637
RsaI	GTAC	1 cut(s)	1053
RsaNI	GTAC	1 cut(s)	1052
RseI	CAYNNNNRTG	2 cut(s)	380, 525
SacI	GAGCTC	2 cut(s)	168, 1068
SaqAI	TTAA	6 cut(s)	11, 251, 302, 497, 587, 624
SatI	GCNGC	3 cut(s)	606, 609, 635
Sau3AI	GATC	2 cut(s)	408, 1038
Sau96I	GGNCC	3 cut(s)	187, 277, 1001
ScrFI	CCNGG	2 cut(s)	602, 936
SduI	GDGCHC	4 cut(s)	168, 717, 931, 1068
SfaNI	GCATC	2 cut(s)	496, 739
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	2 cut(s)	277, 1001
SlaI	CTCGAG	1 cut(s)	137
SmiI	ATTTAAAT	1 cut(s)	252
SmiMI	CAYNNNNRTG	2 cut(s)	380, 525
SmlI	CTYRAG	3 cut(s)	137, 330, 341
SmoI	CTYRAG	3 cut(s)	137, 330, 341
Sse9I	AATT	8 cut(s)	210, 363, 498, 588, 660, 815, 863, 960
SspMI	CTAG	1 cut(s)	767
SstI	GAGCTC	2 cut(s)	168, 1068
StyD4I	CCNGG	2 cut(s)	600, 934
SwaI	ATTTAAAT	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	910
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	2 cut(s)	138, 1014
TasI	AATT	8 cut(s)	210, 363, 498, 588, 660, 815, 863, 960
TfiI	GAWTC	2 cut(s)	644, 1019
Tru1I	TTAA	6 cut(s)	11, 251, 302, 497, 587, 624
Tru9I	TTAA	6 cut(s)	11, 251, 302, 497, 587, 624
TscAI	CASTG	3 cut(s)	234, 728, 903
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	3 cut(s)	605, 608, 634
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	4 cut(s)	509, 688, 777, 1021
TspRI	CASTG	3 cut(s)	234, 728, 903
VpaK11BI	GGWCC	2 cut(s)	277, 1001
XagI	CCTNNNNNAGG	1 cut(s)	939
XapI	RAATTY	4 cut(s)	363, 815, 863, 960
XceI	RCATGY	1 cut(s)	1096
XhoI	CTCGAG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.