AT1G48745

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
18030704 .. 18031593
890 bp
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UTR
Exon/CDS
Intron
AT1G48745.1

Sequence Viewer

Length: 378 bp
ATGAGCGACAATAAAAATCTTCTCCTGAGACGAATGGAAGAAAAAGATCGAGCAAGAAAACAAATCTCTGTTTTATCCTCCAAAAGATCCCAAACCACAAACGCAAACGCAGCTGTTACAGCTCCGTCCGAGGTGGCGTTTAACGTTTGTTGTTTATGTGTTTATTGTCCTCTTTGTGTTCTTTGGTGCTGCATCAAACAGCCTTGTACAATTGGATGGAGAGCCATTCTAAACGCCAAACGCAGATTAAGCGGTTGCAGCGGCTGCGGTAGAAGCTTTAGCAGGAGGGTTTTGGCTGCTGATTATTCGTCTTTTTCGGATATTGATTCTGATGATGTGAATTGCAAAGCTCATAATTGCTCAACACGAAATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.93

Weight (kDa)

9.24

Isoelectric Point (pI)

68.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015434)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 252, 261, 267
AclI AACGTT 1 cut(s) 144
AclWI GGATC 1 cut(s) 81
AfaI GTAC 1 cut(s) 208
AluBI AGCT 4 cut(s) 113, 122, 276, 350
AluI AGCT 4 cut(s) 113, 122, 276, 350
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 1 cut(s) 81
AlwNI CAGNNNCTG 1 cut(s) 264
ApeKI GCWGC 5 cut(s) 110, 189, 258, 264, 296
BbvI GCAGC 5 cut(s) 122, 176, 251, 270, 283
BccI CCATC 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 22
BisI GCNGC 6 cut(s) 111, 190, 259, 262, 265, 297
BlsI GCNGC 6 cut(s) 112, 191, 260, 263, 266, 298
BmsI GCATC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 17
BseXI GCAGC 5 cut(s) 122, 176, 251, 270, 283
BsmAI GTCTC 1 cut(s) 22
BsmBI CGTCTC 1 cut(s) 22
Bsp1407I TGTACA 1 cut(s) 206
Bsp143I GATC 2 cut(s) 46, 86
BspACI CCGC 3 cut(s) 252, 261, 267
BspCNI CTCAG 1 cut(s) 18
BspPI GGATC 1 cut(s) 81
BsrGI TGTACA 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 2 cut(s) 46, 86
BstAPI GCANNNNNTGC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 221
BstKTI GATC 2 cut(s) 49, 89
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 2 cut(s) 46, 86
BstMWI GCNNNNNNNGC 6 cut(s) 110, 119, 249, 258, 264, 273
BstV1I GCAGC 5 cut(s) 122, 176, 251, 270, 283
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
BtsCI GGATG 1 cut(s) 221
CaiI CAGNNNCTG 1 cut(s) 264
Csp6I GTAC 1 cut(s) 207
CviJI RGCY 8 cut(s) 113, 122, 202, 224, 264, 276, 296, 350
CviKI_1 RGCY 8 cut(s) 113, 122, 202, 224, 264, 276, 296, 350
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 1 cut(s) 26
DpnI GATC 2 cut(s) 48, 88
DpnII GATC 2 cut(s) 46, 86
Esp3I CGTCTC 1 cut(s) 22
FaiI YATR 2 cut(s) 157, 354
Fnu4HI GCNGC 6 cut(s) 111, 190, 259, 262, 265, 297
FokI GGATG 1 cut(s) 228
Fsp4HI GCNGC 6 cut(s) 111, 190, 259, 262, 265, 297
GluI GCNGC 6 cut(s) 111, 190, 259, 262, 265, 297
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 1 cut(s) 326
Hpy188I TCNGA 3 cut(s) 130, 319, 331
Hpy188III TCNNGA 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 3 cut(s) 192, 258, 345
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 119, 249, 258, 264, 273
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 144
Kzo9I GATC 2 cut(s) 46, 86
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 2 cut(s) 38, 268
Lsp1109I GCAGC 5 cut(s) 122, 176, 251, 270, 283
LweI GCATC 1 cut(s) 201
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 48, 88
MboI GATC 2 cut(s) 46, 86
MboII GAAGA 2 cut(s) 11, 50
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 86
MluCI AATT 3 cut(s) 210, 340, 355
MnlI CCTC 4 cut(s) 88, 124, 180, 279
MseI TTAA 2 cut(s) 141, 248
MspA1I CMGCKG 2 cut(s) 113, 261
MunI CAATTG 1 cut(s) 210
MwoI GCNNNNNNNGC 6 cut(s) 110, 119, 249, 258, 264, 273
NdeII GATC 2 cut(s) 46, 86
PfeI GAWTC 1 cut(s) 326
PkrI GCNGC 6 cut(s) 112, 191, 260, 263, 266, 298
Psp1406I AACGTT 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 264
PsuI RGATCY 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 141, 248
SatI GCNGC 6 cut(s) 111, 190, 259, 262, 265, 297
Sau3AI GATC 2 cut(s) 46, 86
SetI ASST 6 cut(s) 115, 124, 135, 147, 278, 352
SfaNI GCATC 1 cut(s) 201
SgeI CNNG 6 cut(s) 37, 62, 66, 142, 216, 295
Sse9I AATT 3 cut(s) 210, 340, 355
SsiI CCGC 3 cut(s) 252, 261, 267
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 49
TasI AATT 3 cut(s) 210, 340, 355
TatI WGTACW 1 cut(s) 206
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 2 cut(s) 141, 248
Tru9I TTAA 2 cut(s) 141, 248
TseI GCWGC 5 cut(s) 110, 189, 258, 264, 296
TspGWI ACGGA 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.