FvH4_5g16682

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015434
Physical Location & Seq
Reverse (-)
9533688 .. 9534368
681 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16682.t1

Sequence Viewer

Length: 417 bp
ATGGGGGAGACGCAATATCCGTCCTTCGAGGGTAACTGGAAGCACTTCAATCTCAGGCAAAGTCAGATTTTGAAGATTTTAGGGAAGTTGGAACTTACTGGAAGAAATTCGAAATGTGGTGATAATGCGCCACAGTTTCTATGCGGTGTTTGCTTGTGCATCTTGTGCCCGTTAATGACTATCTGGTCGTGCATAAAGCTACCGTTCAAGGCAGCACGGCAGTGTGCTTGTGTTTGTGGATCAGCTAAGAAGCCAGTTTATGCGTCAGACTCTACAGCTTCTGATATTGATTTGGGTTATCTGTCTGGTAAGCCACGTACAAGCTCTTTGAGAGCTCTTCCAAGAGAAAAGATGGCACACAAGGATATGGCTATGGAAAGTAAAACTGTAAAAGAGGCCAGCAAGCAGCAACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.23

Weight (kDa)

9.22

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48745
fragaria_vesca FvH4_5g16682 FvH4_6g26821
prunus_persica Prupe.5G224800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0179421
rosa_laevigata RLG00000005357 RLG00000018996
rosa_roxburghii Rroxscaffold_2G00115970 Rroxscaffold_3G00274050
rosa_rugosa Rorug02G0278200
rosa_samantha Rh7AG023700 Rh7BG023300 Rh7CG024700 Rh7DG024200
rosa_wichuraiana Rw2G026780 Rw7G001920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 184
AciI CCGC 1 cut(s) 144
AclWI GGATC 1 cut(s) 247
AcsI RAATTY 1 cut(s) 106
AfaI GTAC 1 cut(s) 319
AgsI TTSAA 3 cut(s) 49, 73, 208
AleI CACNNNNGTG 1 cut(s) 220
AluBI AGCT 5 cut(s) 199, 245, 278, 324, 335
AluI AGCT 5 cut(s) 199, 245, 278, 324, 335
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 1 cut(s) 247
AlwNI CAGNNNCTG 1 cut(s) 281
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 2 cut(s) 212, 406
ApoI RAATTY 1 cut(s) 106
Asp700I GAANNNNTTC 2 cut(s) 44, 106
AspLEI GCGC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 131
AsuII TTCGAA 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 224
BccI CCATC 1 cut(s) 346
BceAI ACGGC 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 2
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 2 cut(s) 213, 407
BlsI GCNGC 2 cut(s) 214, 408
BmsI GCATC 1 cut(s) 168
Bpu14I TTCGAA 1 cut(s) 110
BsaAI YACGTR 1 cut(s) 317
Bse1I ACTGG 3 cut(s) 41, 103, 254
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 3 cut(s) 41, 103, 254
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 1 cut(s) 224
BshFI GGCC 1 cut(s) 398
BsiHKAI GWGCWC 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 2
BsmBI CGTCTC 1 cut(s) 2
BsnI GGCC 1 cut(s) 398
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 170, 337
Bsp143I GATC 1 cut(s) 239
BspACI CCGC 1 cut(s) 144
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 1 cut(s) 66
BspPI GGATC 1 cut(s) 247
BspQI GCTCTTC 1 cut(s) 342
BspT104I TTCGAA 1 cut(s) 110
BsrI ACTGG 3 cut(s) 41, 103, 254
BssMI GATC 1 cut(s) 239
Bst4CI ACNGT 3 cut(s) 135, 204, 388
Bst6I CTCTTC 1 cut(s) 342
BstAPI GCANNNNNTGC 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 400, 404
BstDEI CTNAG 2 cut(s) 53, 246
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 1 cut(s) 242
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 1 cut(s) 239
BstMWI GCNNNNNNNGC 2 cut(s) 150, 165
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 398
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 227
Cac8I GCNNGC 2 cut(s) 400, 404
CaiI CAGNNNCTG 1 cut(s) 281
CfoI GCGC 1 cut(s) 130
CseI GACGC 2 cut(s) 19, 252
Csp6I GTAC 1 cut(s) 318
CviJI RGCY 9 cut(s) 199, 245, 253, 278, 313, 324, 335, 371, 398
CviKI_1 RGCY 9 cut(s) 199, 245, 253, 278, 313, 324, 335, 371, 398
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 2 cut(s) 53, 246
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
DrdI GACNNNNNNGTC 1 cut(s) 184
DseDI GACNNNNNNGTC 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Ecl136II GAGCTC 1 cut(s) 335
Eco24I GRGCYC 1 cut(s) 337
Eco53kI GAGCTC 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 335
EcoT38I GRGCYC 1 cut(s) 337
Esp3I CGTCTC 1 cut(s) 2
FaiI YATR 6 cut(s) 142, 194, 261, 368, 374, 415
Fnu4HI GCNGC 2 cut(s) 213, 407
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 2 cut(s) 213, 407
GlaI GCGC 1 cut(s) 129
GluI GCNGC 2 cut(s) 213, 407
HaeIII GGCC 1 cut(s) 398
HgaI GACGC 2 cut(s) 19, 252
HhaI GCGC 1 cut(s) 130
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HinfI GANTC 1 cut(s) 269
HphI GGTGA 1 cut(s) 131
Hpy188I TCNGA 3 cut(s) 66, 268, 283
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 3 cut(s) 135, 204, 388
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 2 cut(s) 159, 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 165
HpyF3I CTNAG 2 cut(s) 53, 246
HpySE526I ACGT 1 cut(s) 316
HspAI GCGC 1 cut(s) 128
Kzo9I GATC 1 cut(s) 239
LguI GCTCTTC 1 cut(s) 342
LpnPI CCDG 7 cut(s) 22, 40, 84, 169, 267, 291, 412
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 168
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 32
MalI GATC 1 cut(s) 241
MboI GATC 1 cut(s) 239
MboII GAAGA 3 cut(s) 85, 114, 329
MhlI GDGCHC 2 cut(s) 170, 337
MluCI AATT 1 cut(s) 106
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 2 cut(s) 22, 388
MroXI GAANNNNTTC 2 cut(s) 44, 106
MseI TTAA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 220
MwoI GCNNNNNNNGC 2 cut(s) 150, 165
NdeII GATC 1 cut(s) 239
NspV TTCGAA 1 cut(s) 110
OliI CACNNNNGTG 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PdmI GAANNNNTTC 2 cut(s) 44, 106
PkrI GCNGC 2 cut(s) 214, 408
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
Ppu21I YACGTR 1 cut(s) 317
Psp124BI GAGCTC 1 cut(s) 337
PstNI CAGNNNCTG 1 cut(s) 281
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
RseI CAYNNNNRTG 1 cut(s) 220
SacI GAGCTC 1 cut(s) 337
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 2 cut(s) 213, 407
Sau3AI GATC 1 cut(s) 239
SchI GAGTC 1 cut(s) 263
SduI GDGCHC 2 cut(s) 170, 337
SetI ASST 6 cut(s) 201, 247, 280, 319, 326, 337
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 273
SfuI TTCGAA 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 1 cut(s) 106
SsiI CCGC 1 cut(s) 144
SstI GAGCTC 1 cut(s) 337
TaaI ACNGT 3 cut(s) 135, 204, 388
TaiI ACGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 27, 110
TasI AATT 1 cut(s) 106
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 227
TseI GCWGC 2 cut(s) 212, 406
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 1 cut(s) 227
XapI RAATTY 1 cut(s) 106
XmnI GAANNNNTTC 2 cut(s) 44, 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.