FvH4_6g26821

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
20516093 .. 20516756
664 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26821.t1

Sequence Viewer

Length: 270 bp
ATGGAGGCGAGGCAGTCCAGTCCTTCTAGGGGAGGTAAATCGAAATGCTGTAATAAAGCCACAGAGTTCCTTTGCAGTGCTTGCTTGCTGTGCATTTCATGCCCGTTAACTGTTTTCTGGTGCTGCATCAAGCTACCGTGCAAGGTTGGATGGCATGCTGCGAAGCATGCAAGGAAGACCGTTTGTGGATCAGGGAAGAGAGTCTATGCATCATATTCTTCGTTTTCTGATGTTGACTTGAATATTCTTCCTGCACTTGCCACTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.6

Weight (kDa)

9.14

Isoelectric Point (pI)

63.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015434)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 196
AdeI CACNNNGTG 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 241
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AlwI GGATC 1 cut(s) 196
ApeKI GCWGC 2 cut(s) 123, 158
BbsI GAAGAC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 110, 145
BccI CCATC 1 cut(s) 144
BfaI CTAG 1 cut(s) 27
BisI GCNGC 2 cut(s) 124, 159
BlsI GCNGC 2 cut(s) 125, 160
BmsI GCATC 2 cut(s) 135, 218
BpiI GAAGAC 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 110, 145
BsgI GTGCAG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 29
Bsp143I GATC 1 cut(s) 188
BspPI GGATC 1 cut(s) 196
BsrI ACTGG 1 cut(s) 18
BssMI GATC 1 cut(s) 188
Bst4CI ACNGT 3 cut(s) 112, 138, 181
Bst6I CTCTTC 1 cut(s) 191
BstAPI GCANNNNNTGC 2 cut(s) 81, 99
BstC8I GCNNGC 4 cut(s) 82, 86, 156, 168
BstF5I GGATG 1 cut(s) 155
BstKTI GATC 1 cut(s) 191
BstMBI GATC 1 cut(s) 188
BstMWI GCNNNNNNNGC 4 cut(s) 81, 90, 99, 167
BstNSI RCATGY 2 cut(s) 158, 170
BstV1I GCAGC 2 cut(s) 110, 145
BstV2I GAAGAC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 4 cut(s) 82, 86, 156, 168
CviAII CATG 3 cut(s) 99, 155, 167
CviJI RGCY 2 cut(s) 59, 133
CviKI_1 RGCY 2 cut(s) 59, 133
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
DraIII CACNNNGTG 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 211
FaeI CATG 3 cut(s) 102, 158, 170
FaiI YATR 5 cut(s) 100, 156, 168, 207, 214
FatI CATG 3 cut(s) 98, 154, 166
Fnu4HI GCNGC 2 cut(s) 124, 159
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 124, 159
FspBI CTAG 1 cut(s) 27
GluI GCNGC 2 cut(s) 124, 159
Hin1II CATG 3 cut(s) 102, 158, 170
HincII GTYRAC 2 cut(s) 108, 235
HindII GTYRAC 2 cut(s) 108, 235
HinfI GANTC 1 cut(s) 201
HpaI GTTAAC 1 cut(s) 108
Hpy166II GTNNAC 2 cut(s) 108, 235
Hpy188I TCNGA 1 cut(s) 229
Hpy8I GTNNAC 2 cut(s) 108, 235
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 3 cut(s) 112, 138, 181
HpyCH4V TGCA 7 cut(s) 75, 93, 126, 141, 170, 209, 254
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 90, 99, 167
Hsp92II CATG 3 cut(s) 102, 158, 170
KspAI GTTAAC 1 cut(s) 108
Kzo9I GATC 1 cut(s) 188
LpnPI CCDG 4 cut(s) 31, 103, 177, 264
Lsp1109I GCAGC 2 cut(s) 110, 145
LweI GCATC 2 cut(s) 135, 218
MaeI CTAG 1 cut(s) 27
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 4 cut(s) 187, 208, 210, 239
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 2 cut(s) 3, 26
Mph1103I ATGCAT 1 cut(s) 211
MseI TTAA 1 cut(s) 107
MwoI GCNNNNNNNGC 4 cut(s) 81, 90, 99, 167
NdeII GATC 1 cut(s) 188
NlaIII CATG 3 cut(s) 102, 158, 170
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 2 cut(s) 158, 170
PaeI GCATGC 2 cut(s) 158, 170
PkrI GCNGC 2 cut(s) 125, 160
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 2 cut(s) 124, 159
Sau3AI GATC 1 cut(s) 188
SchI GAGTC 1 cut(s) 210
SetI ASST 3 cut(s) 37, 135, 147
SfaNI GCATC 2 cut(s) 135, 218
SphI GCATGC 2 cut(s) 158, 170
SspI AATATT 1 cut(s) 244
SspMI CTAG 1 cut(s) 27
TaaI ACNGT 3 cut(s) 112, 138, 181
TaqI TCGA 1 cut(s) 41
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 1 cut(s) 82
TseI GCWGC 2 cut(s) 123, 158
TspDTI ATGAA 1 cut(s) 87
TspGWI ACGGA 1 cut(s) 255
TspRI CASTG 1 cut(s) 82
XceI RCATGY 2 cut(s) 158, 170
XspI CTAG 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.