RchiOBHm_Chr7g0179421

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015434
Physical Location & Seq
Forward (+)
1692178 .. 1692642
465 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15994

Sequence Viewer

Length: 342 bp
ATGAATGCAAAGCCATCAAATTCTTCTTCTCAGGGAAGAAATTCGAAATGTGGTGATTATGCGCCAGAGTTTCTATGCAGCGCTTGCTTATGCATCTGCTGCCCGGTAATGGTTGTCTGGTGGTGCATAAAGCTACCGTTCAAGGTGGGAGGGCACATTGCACGGCGGTATGCTTGTGGTTGTGGATCAGTGAAGAAGACAGTTTGTGCATCATACTCTACAGCATCTGATATTGATTTGGATGATCTGTCTGGTAAGCCAAATACATGCTCTCTGAGAGCTCCAAGAAGAAAGATGGCACATATTGATGTGGCTAATCAGCTGCAAAGTAAAAGAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.24

Weight (kDa)

9.16

Isoelectric Point (pI)

66.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48745
fragaria_vesca FvH4_5g16682 FvH4_6g26821
prunus_persica Prupe.5G224800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0179421
rosa_laevigata RLG00000005357 RLG00000018996
rosa_roxburghii Rroxscaffold_2G00115970 Rroxscaffold_3G00274050
rosa_rugosa Rorug02G0278200
rosa_samantha Rh7AG023700 Rh7BG023300 Rh7CG024700 Rh7DG024200
rosa_wichuraiana Rw2G026780 Rw7G001920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 166
AclWI GGATC 1 cut(s) 193
AcsI RAATTY 2 cut(s) 19, 40
AfeI AGCGCT 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 1 cut(s) 142
AluBI AGCT 3 cut(s) 133, 281, 322
AluI AGCT 3 cut(s) 133, 281, 322
Alw21I GWGCWC 1 cut(s) 283
AlwI GGATC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 227
Aor51HI AGCGCT 1 cut(s) 82
ApeKI GCWGC 3 cut(s) 78, 99, 322
ApoI RAATTY 2 cut(s) 19, 40
Asp700I GAANNNNTTC 1 cut(s) 40
AspLEI GCGC 2 cut(s) 64, 83
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 65
AsuII TTCGAA 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 156
BanII GRGCYC 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 3 cut(s) 86, 90, 309
BccI CCATC 2 cut(s) 22, 289
BceAI ACGGC 1 cut(s) 179
BcnI CCSGG 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 84
BisI GCNGC 3 cut(s) 79, 100, 323
BlsI GCNGC 3 cut(s) 80, 101, 324
Bme1390I CCNGG 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 3 cut(s) 102, 218, 233
BpiI GAAGAC 1 cut(s) 203
Bpu14I TTCGAA 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 156
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 2 cut(s) 44, 266
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 3 cut(s) 86, 90, 309
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 109
BsmI GAATGC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 156, 283
Bsp143I GATC 2 cut(s) 185, 244
BspACI CCGC 1 cut(s) 166
BspCNI CTCAG 2 cut(s) 43, 267
BspPI GGATC 1 cut(s) 193
BspT104I TTCGAA 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 156
BssMI GATC 2 cut(s) 185, 244
Bst4CI ACNGT 2 cut(s) 138, 202
BstAPI GCANNNNNTGC 2 cut(s) 84, 99
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 30, 275
BstF5I GGATG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 2 cut(s) 64, 83
BstKTI GATC 2 cut(s) 188, 247
BstMBI GATC 2 cut(s) 185, 244
BstMWI GCNNNNNNNGC 2 cut(s) 84, 99
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 3 cut(s) 86, 90, 309
BstV2I GAAGAC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 85
CaiI CAGNNNCTG 1 cut(s) 227
CfoI GCGC 2 cut(s) 64, 83
CviAII CATG 1 cut(s) 267
CviJI RGCY 6 cut(s) 13, 133, 259, 281, 314, 322
CviKI_1 RGCY 6 cut(s) 13, 133, 259, 281, 314, 322
DdeI CTNAG 2 cut(s) 30, 275
DpnI GATC 2 cut(s) 187, 246
DpnII GATC 2 cut(s) 185, 244
Ecl136II GAGCTC 1 cut(s) 281
Eco24I GRGCYC 1 cut(s) 283
Eco47III AGCGCT 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 281
EcoT22I ATGCAT 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 283
FaeI CATG 1 cut(s) 270
FaiI YATR 8 cut(s) 60, 76, 91, 128, 171, 214, 268, 303
FatI CATG 1 cut(s) 266
Fnu4HI GCNGC 3 cut(s) 79, 100, 323
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 3 cut(s) 79, 100, 323
GlaI GCGC 2 cut(s) 63, 82
GluI GCNGC 3 cut(s) 79, 100, 323
HaeII RGCGCY 1 cut(s) 84
HapII CCGG 1 cut(s) 104
HhaI GCGC 2 cut(s) 64, 83
Hin1II CATG 1 cut(s) 270
Hin6I GCGC 2 cut(s) 62, 81
HinP1I GCGC 2 cut(s) 62, 81
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 229, 276
HpyCH4III ACNGT 2 cut(s) 138, 202
HpyCH4V TGCA 7 cut(s) 8, 78, 93, 126, 161, 209, 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 99
HpyF3I CTNAG 2 cut(s) 30, 275
Hsp92II CATG 1 cut(s) 270
HspAI GCGC 2 cut(s) 62, 81
Kzo9I GATC 2 cut(s) 185, 244
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 5 cut(s) 17, 78, 103, 117, 237
Lsp1109I GCAGC 3 cut(s) 86, 90, 309
LweI GCATC 3 cut(s) 102, 218, 233
MalI GATC 2 cut(s) 187, 246
MboI GATC 2 cut(s) 185, 244
MboII GAAGA 6 cut(s) 15, 18, 48, 205, 208, 300
MhlI GDGCHC 2 cut(s) 156, 283
MluCI AATT 2 cut(s) 19, 40
MnlI CCTC 2 cut(s) 143, 329
Mph1103I ATGCAT 1 cut(s) 95
MroXI GAANNNNTTC 1 cut(s) 40
MslI CAYNNNNRTG 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 84, 99
NciI CCSGG 1 cut(s) 104
NdeII GATC 2 cut(s) 185, 244
NlaIII CATG 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 95
NspI RCATGY 1 cut(s) 270
NspV TTCGAA 1 cut(s) 44
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 40
PkrI GCNGC 3 cut(s) 80, 101, 324
Psp124BI GAGCTC 1 cut(s) 283
PstNI CAGNNNCTG 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 306
SacI GAGCTC 1 cut(s) 283
SatI GCNGC 3 cut(s) 79, 100, 323
Sau3AI GATC 2 cut(s) 185, 244
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 2 cut(s) 156, 283
SetI ASST 4 cut(s) 135, 147, 283, 324
SfaNI GCATC 3 cut(s) 102, 218, 233
SfcI CTRYAG 1 cut(s) 219
SfuI TTCGAA 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 2 cut(s) 19, 40
SsiI CCGC 1 cut(s) 166
SstI GAGCTC 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 138, 202
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 19, 40
TscAI CASTG 1 cut(s) 195
TseI GCWGC 3 cut(s) 78, 99, 322
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 195
XapI RAATTY 2 cut(s) 19, 40
XceI RCATGY 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 40
Zsp2I ATGCAT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.