Rh7BG023300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015434
Physical Location & Seq
Forward (+)
1639825 .. 1640169
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG023300.1

Sequence Viewer

Length: 345 bp
ATGAATGCAAAGCCATCAAATTCTTCTTCTCAGGGAAAAAATCCGAAATGTGGTGGTGATAATGCGCCAGAGTTTCTATGCAGCGCTTGCTTGTGCATCTGCTGCCCGGTAATGGTTGTCTGGTGGTGCATAAAGCTACCGTTCAAGGTGGGAGGGCACATTGCACGGCGGTATGCTTGTGGTTGTGGATCAGTGAAGAAGACAGTTTGTGCATCATACTCTACAGCATCTGATATTGATTTGGATGATCTGTCTGGTAAGCCACATACATGCTCTCCGAGAGCTCCAAGAAGAAAGATGGCACATATTGATGTGGCTAATCAGCTGCAAAGTAAAAGAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.23

Weight (kDa)

9.16

Isoelectric Point (pI)

64.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48745
fragaria_vesca FvH4_5g16682 FvH4_6g26821
prunus_persica Prupe.5G224800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0179421
rosa_laevigata RLG00000005357 RLG00000018996
rosa_roxburghii Rroxscaffold_2G00115970 Rroxscaffold_3G00274050
rosa_rugosa Rorug02G0278200
rosa_samantha Rh7AG023700 Rh7BG023300 Rh7CG024700 Rh7DG024200
rosa_wichuraiana Rw2G026780 Rw7G001920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 169
AclWI GGATC 1 cut(s) 196
AcsI RAATTY 1 cut(s) 19
AfeI AGCGCT 1 cut(s) 85
AfiI CCNNNNNNNGG 2 cut(s) 50, 112
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 3 cut(s) 136, 284, 325
AluI AGCT 3 cut(s) 136, 284, 325
Alw21I GWGCWC 1 cut(s) 286
AlwI GGATC 1 cut(s) 196
AlwNI CAGNNNCTG 1 cut(s) 230
Aor51HI AGCGCT 1 cut(s) 85
ApeKI GCWGC 3 cut(s) 81, 102, 325
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 2 cut(s) 67, 86
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 159
BanII GRGCYC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 3 cut(s) 89, 93, 312
BccI CCATC 2 cut(s) 22, 292
BceAI ACGGC 1 cut(s) 182
BcnI CCSGG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 3 cut(s) 82, 103, 326
BlsI GCNGC 3 cut(s) 83, 104, 327
Bme1390I CCNGG 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 3 cut(s) 105, 221, 236
BpiI GAAGAC 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 112
Bse3DI GCAATG 1 cut(s) 159
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 2 cut(s) 50, 112
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 159
BseXI GCAGC 3 cut(s) 89, 93, 312
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 50, 112
BsmI GAATGC 1 cut(s) 10
Bsp1286I GDGCHC 2 cut(s) 159, 286
Bsp143I GATC 2 cut(s) 188, 247
BspACI CCGC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 159
BssMI GATC 2 cut(s) 188, 247
Bst4CI ACNGT 2 cut(s) 141, 205
BstAPI GCANNNNNTGC 2 cut(s) 87, 102
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 250
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 2 cut(s) 67, 86
BstKTI GATC 2 cut(s) 191, 250
BstMBI GATC 2 cut(s) 188, 247
BstMWI GCNNNNNNNGC 2 cut(s) 87, 102
BstNSI RCATGY 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 105
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 89, 93, 312
BstV2I GAAGAC 1 cut(s) 206
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 88
CaiI CAGNNNCTG 1 cut(s) 230
CfoI GCGC 2 cut(s) 67, 86
CviAII CATG 1 cut(s) 270
CviJI RGCY 6 cut(s) 13, 136, 262, 284, 317, 325
CviKI_1 RGCY 6 cut(s) 13, 136, 262, 284, 317, 325
DdeI CTNAG 1 cut(s) 30
DpnI GATC 2 cut(s) 190, 249
DpnII GATC 2 cut(s) 188, 247
Ecl136II GAGCTC 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 286
Eco47III AGCGCT 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 286
FaeI CATG 1 cut(s) 273
FaiI YATR 7 cut(s) 79, 131, 174, 217, 267, 271, 306
FatI CATG 1 cut(s) 269
Fnu4HI GCNGC 3 cut(s) 82, 103, 326
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 82, 103, 326
GlaI GCGC 2 cut(s) 66, 85
GluI GCNGC 3 cut(s) 82, 103, 326
HaeII RGCGCY 1 cut(s) 87
HapII CCGG 1 cut(s) 107
HhaI GCGC 2 cut(s) 67, 86
Hin1II CATG 1 cut(s) 273
Hin6I GCGC 2 cut(s) 65, 84
HinP1I GCGC 2 cut(s) 65, 84
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 68
Hpy188I TCNGA 3 cut(s) 45, 232, 279
HpyCH4III ACNGT 2 cut(s) 141, 205
HpyCH4V TGCA 7 cut(s) 8, 81, 96, 129, 164, 212, 328
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 102
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 1 cut(s) 273
HspAI GCGC 2 cut(s) 65, 84
Kzo9I GATC 2 cut(s) 188, 247
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 5 cut(s) 17, 81, 106, 120, 240
Lsp1109I GCAGC 3 cut(s) 89, 93, 312
LweI GCATC 3 cut(s) 105, 221, 236
MalI GATC 2 cut(s) 190, 249
MboI GATC 2 cut(s) 188, 247
MboII GAAGA 5 cut(s) 15, 18, 208, 211, 303
MhlI GDGCHC 2 cut(s) 159, 286
MluCI AATT 1 cut(s) 19
MnlI CCTC 2 cut(s) 146, 332
MslI CAYNNNNRTG 2 cut(s) 268, 309
MspA1I CMGCKG 1 cut(s) 325
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 87, 102
NciI CCSGG 1 cut(s) 107
NdeII GATC 2 cut(s) 188, 247
NlaIII CATG 1 cut(s) 273
NspI RCATGY 1 cut(s) 273
PctI GAATGC 1 cut(s) 10
PkrI GCNGC 3 cut(s) 83, 104, 327
Psp124BI GAGCTC 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 325
RseI CAYNNNNRTG 2 cut(s) 268, 309
SacI GAGCTC 1 cut(s) 286
SatI GCNGC 3 cut(s) 82, 103, 326
Sau3AI GATC 2 cut(s) 188, 247
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 2 cut(s) 159, 286
SetI ASST 4 cut(s) 138, 150, 286, 327
SfaNI GCATC 3 cut(s) 105, 221, 236
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 2 cut(s) 268, 309
Sse9I AATT 1 cut(s) 19
SsiI CCGC 1 cut(s) 169
SstI GAGCTC 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 141, 205
TasI AATT 1 cut(s) 19
TscAI CASTG 1 cut(s) 198
TseI GCWGC 3 cut(s) 81, 102, 325
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 198
XapI RAATTY 1 cut(s) 19
XceI RCATGY 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.