Rroxscaffold_2G00115970

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
42568746 .. 42569130
385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115970.1

Sequence Viewer

Length: 291 bp
ATGGAGGCAAGGCCGTCCAGTTCTTCTAGGGGACAAAAGTCAAAATGCTGTGATAAAACCACAGAGTTTCTTTGCAGTGGTTGCTTGCTGTGCATTTCATGCCCGTTAACAGTTGTCTGGTGCTGCATCAAGCTACCGTGCAAGGTTGGATGGCATGCTGCGAAGCATGCAAGGAAGAGCGTTTGTGGATCAGGGAAGAGAGTTTATGCATCGTATTCTTCGTTTTCTGACATTGACTTGAATATTCTGCCTGCAACCAAAACCCCTCTAGTGTTCCTCTGTTTCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.47

Weight (kDa)

9.0

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015434)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 196
AgsI TTSAA 1 cut(s) 241
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AlwI GGATC 1 cut(s) 196
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 2 cut(s) 123, 158
BbvI GCAGC 2 cut(s) 110, 145
BccI CCATC 1 cut(s) 144
BfaI CTAG 2 cut(s) 27, 269
BisI GCNGC 2 cut(s) 124, 159
BlsI GCNGC 2 cut(s) 125, 160
BmsI GCATC 2 cut(s) 135, 218
BoxI GACNNNNGTC 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 110, 145
BshFI GGCC 1 cut(s) 13
BslFI GGGAC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 188
BspANI GGCC 1 cut(s) 13
BspPI GGATC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 18
BssMI GATC 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 112, 138
Bst6I CTCTTC 2 cut(s) 170, 191
BstAPI GCANNNNNTGC 2 cut(s) 81, 99
BstC8I GCNNGC 4 cut(s) 86, 156, 168, 252
BstF5I GGATG 1 cut(s) 155
BstKTI GATC 1 cut(s) 191
BstMBI GATC 1 cut(s) 188
BstMWI GCNNNNNNNGC 4 cut(s) 81, 90, 99, 167
BstNSI RCATGY 2 cut(s) 158, 170
BstPAI GACNNNNGTC 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 110, 145
BsuRI GGCC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 4 cut(s) 86, 156, 168, 252
CviAII CATG 3 cut(s) 99, 155, 167
CviJI RGCY 2 cut(s) 13, 133
CviKI_1 RGCY 2 cut(s) 13, 133
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 170, 191
EarI CTCTTC 2 cut(s) 170, 191
EcoT22I ATGCAT 1 cut(s) 211
FaeI CATG 3 cut(s) 102, 158, 170
FaiI YATR 4 cut(s) 100, 156, 168, 207
FaqI GGGAC 1 cut(s) 45
FatI CATG 3 cut(s) 98, 154, 166
Fnu4HI GCNGC 2 cut(s) 124, 159
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 124, 159
FspBI CTAG 2 cut(s) 27, 269
GluI GCNGC 2 cut(s) 124, 159
HaeIII GGCC 1 cut(s) 13
Hin1II CATG 3 cut(s) 102, 158, 170
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HpaI GTTAAC 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 108
HpyCH4III ACNGT 2 cut(s) 112, 138
HpyCH4V TGCA 7 cut(s) 75, 93, 126, 141, 170, 209, 254
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 90, 99, 167
Hsp92II CATG 3 cut(s) 102, 158, 170
KspAI GTTAAC 1 cut(s) 108
Kzo9I GATC 1 cut(s) 188
LguI GCTCTTC 1 cut(s) 170
LpnPI CCDG 4 cut(s) 31, 103, 177, 264
Lsp1109I GCAGC 2 cut(s) 110, 145
LweI GCATC 2 cut(s) 135, 218
MaeI CTAG 2 cut(s) 27, 269
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 4 cut(s) 15, 187, 208, 210
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 2 cut(s) 276, 287
Mph1103I ATGCAT 1 cut(s) 211
MseI TTAA 2 cut(s) 107, 289
MwoI GCNNNNNNNGC 4 cut(s) 81, 90, 99, 167
NdeII GATC 1 cut(s) 188
NlaIII CATG 3 cut(s) 102, 158, 170
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 2 cut(s) 158, 170
PaeI GCATGC 2 cut(s) 158, 170
PciSI GCTCTTC 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PkrI GCNGC 2 cut(s) 125, 160
PshAI GACNNNNGTC 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 2 cut(s) 107, 289
SatI GCNGC 2 cut(s) 124, 159
Sau3AI GATC 1 cut(s) 188
SetI ASST 2 cut(s) 135, 147
SfaNI GCATC 2 cut(s) 135, 218
SphI GCATGC 2 cut(s) 158, 170
SspI AATATT 1 cut(s) 244
SspMI CTAG 2 cut(s) 27, 269
TaaI ACNGT 2 cut(s) 112, 138
Tru1I TTAA 2 cut(s) 107, 289
Tru9I TTAA 2 cut(s) 107, 289
TscAI CASTG 1 cut(s) 82
TseI GCWGC 2 cut(s) 123, 158
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 1 cut(s) 82
XceI RCATGY 2 cut(s) 158, 170
XspI CTAG 2 cut(s) 27, 269
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.