RLG00000018996

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
44405362 .. 44405852
491 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018996

Sequence Viewer

Length: 309 bp
ATGGAGGCATGGCCGTCCACTTCTTCTAGGGGACAAAAATCGAAATGCTGTGATAAAGCCACAGAGTTCCTTTGCAGTGCTTGCTTGCTGTGCATTTCATGCCCGTTAACAGTTGTCTGGTGCTGCATCAAGCTACCGTGCAAGGTTGGATGGCATGCTGCGAAGCATGCAAGGAAGAGCGTTTGCGGATCAGGGAAGAGAGTTTATGCATCATATTCTTCGTTTTCTGACATTGACTTGAATATTCTGCCTGCATTTATTCCATTTAGCATATTTAACGTGTACTGTGATCCGATCATTGGTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.19

Weight (kDa)

8.67

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015434)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AclWI GGATC 2 cut(s) 196, 284
AcoI YGGCCR 1 cut(s) 11
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 1 cut(s) 241
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AlwI GGATC 2 cut(s) 196, 284
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 2 cut(s) 123, 158
BbvI GCAGC 2 cut(s) 110, 145
BccI CCATC 1 cut(s) 144
BfaI CTAG 1 cut(s) 27
BisI GCNGC 2 cut(s) 124, 159
BlsI GCNGC 2 cut(s) 125, 160
BmsI GCATC 2 cut(s) 135, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 299
BseXI GCAGC 2 cut(s) 110, 145
BshFI GGCC 1 cut(s) 13
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 13
Bsp143I GATC 3 cut(s) 188, 289, 294
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 13
BspPI GGATC 2 cut(s) 196, 284
BspQI GCTCTTC 1 cut(s) 170
BssMI GATC 3 cut(s) 188, 289, 294
Bst4CI ACNGT 3 cut(s) 112, 138, 287
Bst6I CTCTTC 2 cut(s) 170, 191
BstAPI GCANNNNNTGC 2 cut(s) 81, 99
BstC8I GCNNGC 5 cut(s) 82, 86, 156, 168, 252
BstF5I GGATG 1 cut(s) 155
BstKTI GATC 3 cut(s) 191, 292, 297
BstMBI GATC 3 cut(s) 188, 289, 294
BstMWI GCNNNNNNNGC 4 cut(s) 81, 90, 99, 167
BstNSI RCATGY 2 cut(s) 158, 170
BstV1I GCAGC 2 cut(s) 110, 145
BsuRI GGCC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 5 cut(s) 82, 86, 156, 168, 252
Csp6I GTAC 1 cut(s) 283
CviAII CATG 4 cut(s) 9, 99, 155, 167
CviJI RGCY 3 cut(s) 13, 59, 133
CviKI_1 RGCY 3 cut(s) 13, 59, 133
CviQI GTAC 1 cut(s) 283
DpnI GATC 3 cut(s) 190, 291, 296
DpnII GATC 3 cut(s) 188, 289, 294
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 2 cut(s) 170, 191
EarI CTCTTC 2 cut(s) 170, 191
EcoT22I ATGCAT 1 cut(s) 211
FaeI CATG 4 cut(s) 12, 102, 158, 170
FaiI YATR 7 cut(s) 10, 100, 156, 168, 207, 214, 272
FaqI GGGAC 1 cut(s) 45
FatI CATG 4 cut(s) 8, 98, 154, 166
Fnu4HI GCNGC 2 cut(s) 124, 159
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 124, 159
FspBI CTAG 1 cut(s) 27
GluI GCNGC 2 cut(s) 124, 159
HaeIII GGCC 1 cut(s) 13
Hin1II CATG 4 cut(s) 12, 102, 158, 170
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HpaI GTTAAC 1 cut(s) 108
Hpy166II GTNNAC 3 cut(s) 18, 108, 283
Hpy188I TCNGA 2 cut(s) 229, 294
Hpy8I GTNNAC 3 cut(s) 18, 108, 283
HpyCH4III ACNGT 3 cut(s) 112, 138, 287
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 7 cut(s) 75, 93, 126, 141, 170, 209, 254
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 90, 99, 167
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 4 cut(s) 12, 102, 158, 170
KspAI GTTAAC 1 cut(s) 108
Kzo9I GATC 3 cut(s) 188, 289, 294
LguI GCTCTTC 1 cut(s) 170
LpnPI CCDG 3 cut(s) 103, 177, 264
Lsp1109I GCAGC 2 cut(s) 110, 145
LweI GCATC 2 cut(s) 135, 218
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 279
MalI GATC 3 cut(s) 190, 291, 296
MboI GATC 3 cut(s) 188, 289, 294
MboII GAAGA 4 cut(s) 15, 187, 208, 210
MmeI TCCRAC 1 cut(s) 127
Mph1103I ATGCAT 1 cut(s) 211
MseI TTAA 2 cut(s) 107, 276
MwoI GCNNNNNNNGC 4 cut(s) 81, 90, 99, 167
NdeII GATC 3 cut(s) 188, 289, 294
NlaIII CATG 4 cut(s) 12, 102, 158, 170
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 2 cut(s) 158, 170
PaeI GCATGC 2 cut(s) 158, 170
PciSI GCTCTTC 1 cut(s) 170
PkrI GCNGC 2 cut(s) 125, 160
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 2 cut(s) 107, 276
SatI GCNGC 2 cut(s) 124, 159
Sau3AI GATC 3 cut(s) 188, 289, 294
SetI ASST 3 cut(s) 135, 147, 282
SfaNI GCATC 2 cut(s) 135, 218
SphI GCATGC 2 cut(s) 158, 170
SsiI CCGC 1 cut(s) 186
SspI AATATT 1 cut(s) 244
SspMI CTAG 1 cut(s) 27
TaaI ACNGT 3 cut(s) 112, 138, 287
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 41
TatI WGTACW 1 cut(s) 282
Tru1I TTAA 2 cut(s) 107, 276
Tru9I TTAA 2 cut(s) 107, 276
TscAI CASTG 1 cut(s) 82
TseI GCWGC 2 cut(s) 123, 158
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 1 cut(s) 82
XceI RCATGY 2 cut(s) 158, 170
XspI CTAG 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.