Rw2G026780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015434
Physical Location & Seq
Reverse (-)
41685607 .. 41685906
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G026780.1

Sequence Viewer

Length: 261 bp
ATGGAGGCAAGGCTGTCCAGTTCTTCTAGGGGACAAAAAACGAAATGCTGTGATAAAGCCACAGAGTACCTTTGCAGTGCTTGCGTGCTGTGCATTTCATGCCCTTTAACAGTTGTCTGGTGCTGCATCAAGCTACCGTGCAAGGTTGGATGGCATGCTGCGAAGCATGCAAGGAAGAGCGTTTGCGGATCAGGGAAGAGAAATATTCTGCCTGGTAAGTCGCACACATGCACCAAAAGTAGTTTGAGAGCTCCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.26

Weight (kDa)

9.5

Isoelectric Point (pI)

57.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48745
fragaria_vesca FvH4_5g16682 FvH4_6g26821
prunus_persica Prupe.5G224800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0179421
rosa_laevigata RLG00000005357 RLG00000018996
rosa_roxburghii Rroxscaffold_2G00115970 Rroxscaffold_3G00274050
rosa_rugosa Rorug02G0278200
rosa_samantha Rh7AG023700 Rh7BG023300 Rh7CG024700 Rh7DG024200
rosa_wichuraiana Rw2G026780 Rw7G001920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 196
AfaI GTAC 1 cut(s) 68
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 3 cut(s) 133, 251, 258
AluI AGCT 3 cut(s) 133, 251, 258
Alw21I GWGCWC 1 cut(s) 253
AlwI GGATC 1 cut(s) 196
ApeKI GCWGC 2 cut(s) 123, 158
BanII GRGCYC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 2 cut(s) 110, 145
BccI CCATC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 213
BfaI CTAG 3 cut(s) 27, 255, 259
BisI GCNGC 2 cut(s) 124, 159
BlsI GCNGC 2 cut(s) 125, 160
Bme1390I CCNGG 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 110, 145
BsiHKAI GWGCWC 1 cut(s) 253
BslFI GGGAC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 1 cut(s) 188
BspACI CCGC 1 cut(s) 186
BspPI GGATC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 18
BssMI GATC 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 112, 138
Bst6I CTCTTC 2 cut(s) 170, 191
BstAPI GCANNNNNTGC 2 cut(s) 81, 99
BstC8I GCNNGC 4 cut(s) 82, 86, 156, 168
BstF5I GGATG 1 cut(s) 155
BstKTI GATC 1 cut(s) 191
BstMBI GATC 1 cut(s) 188
BstMWI GCNNNNNNNGC 4 cut(s) 81, 90, 99, 167
BstNI CCWGG 1 cut(s) 213
BstNSI RCATGY 3 cut(s) 158, 170, 231
BstSCI CCNGG 1 cut(s) 211
BstV1I GCAGC 2 cut(s) 110, 145
BtsCI GGATG 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 4 cut(s) 82, 86, 156, 168
Csp6I GTAC 1 cut(s) 67
CviAII CATG 4 cut(s) 99, 155, 167, 228
CviJI RGCY 5 cut(s) 13, 59, 133, 251, 258
CviKI_1 RGCY 5 cut(s) 13, 59, 133, 251, 258
CviQI GTAC 1 cut(s) 67
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 170, 191
EarI CTCTTC 2 cut(s) 170, 191
Ecl136II GAGCTC 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 253
FaeI CATG 4 cut(s) 102, 158, 170, 231
FaiI YATR 4 cut(s) 100, 156, 168, 229
FaqI GGGAC 1 cut(s) 45
FatI CATG 4 cut(s) 98, 154, 166, 227
Fnu4HI GCNGC 2 cut(s) 124, 159
FokI GGATG 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 2 cut(s) 124, 159
FspBI CTAG 3 cut(s) 27, 255, 259
GluI GCNGC 2 cut(s) 124, 159
Hin1II CATG 4 cut(s) 102, 158, 170, 231
HpyCH4III ACNGT 2 cut(s) 112, 138
HpyCH4V TGCA 6 cut(s) 75, 93, 126, 141, 170, 231
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 90, 99, 167
Hsp92II CATG 4 cut(s) 102, 158, 170, 231
Kzo9I GATC 1 cut(s) 188
LguI GCTCTTC 1 cut(s) 170
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 5 cut(s) 31, 103, 177, 198, 225
Lsp1109I GCAGC 2 cut(s) 110, 145
LweI GCATC 1 cut(s) 135
MaeI CTAG 3 cut(s) 27, 255, 259
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 3 cut(s) 15, 187, 208
MhlI GDGCHC 1 cut(s) 253
MmeI TCCRAC 1 cut(s) 127
MseI TTAA 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 4 cut(s) 81, 90, 99, 167
NdeII GATC 1 cut(s) 188
NlaIII CATG 4 cut(s) 102, 158, 170, 231
NspI RCATGY 3 cut(s) 158, 170, 231
PaeI GCATGC 2 cut(s) 158, 170
PciSI GCTCTTC 1 cut(s) 170
PkrI GCNGC 2 cut(s) 125, 160
Psp124BI GAGCTC 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SacI GAGCTC 1 cut(s) 253
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 2 cut(s) 124, 159
Sau3AI GATC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 1 cut(s) 253
SetI ASST 5 cut(s) 72, 135, 147, 253, 260
SfaNI GCATC 1 cut(s) 135
SphI GCATGC 2 cut(s) 158, 170
SsiI CCGC 1 cut(s) 186
SspI AATATT 1 cut(s) 205
SspMI CTAG 3 cut(s) 27, 255, 259
SstI GAGCTC 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 2 cut(s) 112, 138
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 1 cut(s) 82
TseI GCWGC 2 cut(s) 123, 158
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 1 cut(s) 82
XceI RCATGY 3 cut(s) 158, 170, 231
XspI CTAG 3 cut(s) 27, 255, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.