Rroxscaffold_3G00274050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015434
Physical Location & Seq
Reverse (-)
65758804 .. 65759657
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00274050.1

Sequence Viewer

Length: 471 bp
ATGTATAAAAGTGAACAGCAATTTGATAAACTTACAAAGGGAAAGCAGCAAGCTTTTCTGATTGGAATATGTCAACACCAGAAACTGCAGCATTTGCTCGTGTTTGCATCAATGGGGGAGACACCATATTGGTCCTTTGAAGATAACTGGAAGCACTCTGAGGGAAGAAATTCGAAATGTGGTGATAATGCACCAGAGTTTCTATGCAGCGCTTGCTTGTGCATCTGCTGCCCAGTAATGGTTGTCTGGTGGTGCATAAAGCTACCGTTCAAGGTCGGAGGGCACATTGCACGGCGGTATGCTTGTGGTTGTGGATCAGTGAAGAAGACAGTTTGTGCATCATACTCTACAGCATCTGATATTGATTTGGATGATCTGTCTGGTAAGCCAAATACATGCTCTCTGAGAGCTCCAAGAAGAAAGATGGCACATATTGATGTGGCGAATCAGCTGCAAAGTAAAAGAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.5

Weight (kDa)

8.94

Isoelectric Point (pI)

52.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48745
fragaria_vesca FvH4_5g16682 FvH4_6g26821
prunus_persica Prupe.5G224800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0179421
rosa_laevigata RLG00000005357 RLG00000018996
rosa_roxburghii Rroxscaffold_2G00115970 Rroxscaffold_3G00274050
rosa_rugosa Rorug02G0278200
rosa_samantha Rh7AG023700 Rh7BG023300 Rh7CG024700 Rh7DG024200
rosa_wichuraiana Rw2G026780 Rw7G001920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 295
AclWI GGATC 1 cut(s) 322
AcsI RAATTY 1 cut(s) 169
AfeI AGCGCT 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 2 cut(s) 140, 271
AluBI AGCT 4 cut(s) 53, 262, 410, 451
AluI AGCT 4 cut(s) 53, 262, 410, 451
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 322
AlwNI CAGNNNCTG 2 cut(s) 85, 356
Aor51HI AGCGCT 1 cut(s) 211
ApeKI GCWGC 5 cut(s) 46, 88, 207, 228, 451
ApoI RAATTY 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 194
AsuII TTCGAA 1 cut(s) 173
AvaII GGWCC 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 285
BanII GRGCYC 1 cut(s) 412
BauI CACGAG 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 5 cut(s) 58, 100, 215, 219, 438
BccI CCATC 1 cut(s) 418
BceAI ACGGC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 433, 467
BcoDI GTCTC 1 cut(s) 113
BfmI CTRYAG 2 cut(s) 86, 348
BfoI RGCGCY 1 cut(s) 213
BisI GCNGC 5 cut(s) 47, 89, 208, 229, 452
BlsI GCNGC 5 cut(s) 48, 90, 209, 230, 453
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 132
BmrI ACTGGG 1 cut(s) 227
BmsI GCATC 4 cut(s) 116, 231, 347, 362
BmuI ACTGGG 1 cut(s) 227
BpiI GAAGAC 1 cut(s) 332
Bpu14I TTCGAA 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 2 cut(s) 152, 233
Bse3DI GCAATG 1 cut(s) 285
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 2 cut(s) 150, 395
BseNI ACTGG 2 cut(s) 152, 233
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 5 cut(s) 58, 100, 215, 219, 438
BsiHKAI GWGCWC 1 cut(s) 412
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 285, 412
Bsp143I GATC 2 cut(s) 314, 373
BspACI CCGC 1 cut(s) 295
BspCNI CTCAG 2 cut(s) 151, 396
BspMAI CTGCAG 1 cut(s) 90
BspPI GGATC 1 cut(s) 322
BspT104I TTCGAA 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 285
BsrI ACTGG 2 cut(s) 152, 233
BssMI GATC 2 cut(s) 314, 373
BssSI CACGAG 1 cut(s) 98
Bst2BI CACGAG 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 267, 331
BstAPI GCANNNNNTGC 3 cut(s) 94, 213, 228
BstBI TTCGAA 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 51, 214
BstDEI CTNAG 2 cut(s) 159, 404
BstF5I GGATG 1 cut(s) 376
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 2 cut(s) 317, 376
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 314, 373
BstMWI GCNNNNNNNGC 3 cut(s) 94, 213, 228
BstNSI RCATGY 1 cut(s) 399
BstSFI CTRYAG 2 cut(s) 86, 348
BstSLI GKGCMC 1 cut(s) 285
BstV1I GCAGC 5 cut(s) 58, 100, 215, 219, 438
BstV2I GAAGAC 1 cut(s) 332
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 51, 214
CaiI CAGNNNCTG 2 cut(s) 85, 356
CfoI GCGC 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 132
CviAII CATG 1 cut(s) 396
CviJI RGCY 5 cut(s) 53, 262, 388, 410, 451
CviKI_1 RGCY 5 cut(s) 53, 262, 388, 410, 451
DdeI CTNAG 2 cut(s) 159, 404
DpnI GATC 2 cut(s) 316, 375
DpnII GATC 2 cut(s) 314, 373
Ecl136II GAGCTC 1 cut(s) 410
Eco24I GRGCYC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 132
Eco47III AGCGCT 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 410
EcoT38I GRGCYC 1 cut(s) 412
FaeI CATG 1 cut(s) 399
FaiI YATR 9 cut(s) 6, 70, 127, 205, 257, 300, 343, 397, 432
FatI CATG 1 cut(s) 395
Fnu4HI GCNGC 5 cut(s) 47, 89, 208, 229, 452
FokI GGATG 1 cut(s) 383
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 5 cut(s) 47, 89, 208, 229, 452
GlaI GCGC 1 cut(s) 211
GluI GCNGC 5 cut(s) 47, 89, 208, 229, 452
HaeII RGCGCY 1 cut(s) 213
HhaI GCGC 1 cut(s) 212
Hin1II CATG 1 cut(s) 399
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 51
HinfI GANTC 1 cut(s) 445
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 2 cut(s) 14, 74
Hpy188I TCNGA 5 cut(s) 60, 160, 278, 358, 405
Hpy8I GTNNAC 2 cut(s) 14, 74
HpyCH4III ACNGT 2 cut(s) 267, 331
HpyCH4V TGCA 9 cut(s) 88, 107, 191, 207, 222, 255, 290, 338, 454
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 213, 228
HpyF3I CTNAG 2 cut(s) 159, 404
Hsp92II CATG 1 cut(s) 399
HspAI GCGC 1 cut(s) 210
Kzo9I GATC 2 cut(s) 314, 373
LmnI GCTCC 1 cut(s) 415
LpnPI CCDG 6 cut(s) 92, 133, 207, 232, 246, 366
Lsp1109I GCAGC 5 cut(s) 58, 100, 215, 219, 438
LweI GCATC 4 cut(s) 116, 231, 347, 362
MalI GATC 2 cut(s) 316, 375
MboI GATC 2 cut(s) 314, 373
MboII GAAGA 5 cut(s) 152, 177, 334, 337, 429
MhlI GDGCHC 2 cut(s) 285, 412
MluCI AATT 2 cut(s) 20, 169
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 3 cut(s) 154, 272, 458
MroXI GAANNNNTTC 1 cut(s) 169
MslI CAYNNNNRTG 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 451
MwoI GCNNNNNNNGC 3 cut(s) 94, 213, 228
NdeII GATC 2 cut(s) 314, 373
NlaIII CATG 1 cut(s) 399
NspI RCATGY 1 cut(s) 399
NspV TTCGAA 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 445
PkrI GCNGC 5 cut(s) 48, 90, 209, 230, 453
Psp124BI GAGCTC 1 cut(s) 412
PspPI GGNCC 1 cut(s) 132
PstI CTGCAG 1 cut(s) 90
PstNI CAGNNNCTG 2 cut(s) 85, 356
PvuII CAGCTG 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 435
SacI GAGCTC 1 cut(s) 412
SatI GCNGC 5 cut(s) 47, 89, 208, 229, 452
Sau3AI GATC 2 cut(s) 314, 373
Sau96I GGNCC 1 cut(s) 132
SduI GDGCHC 2 cut(s) 285, 412
SetI ASST 5 cut(s) 55, 264, 276, 412, 453
SfaNI GCATC 4 cut(s) 116, 231, 347, 362
SfcI CTRYAG 2 cut(s) 86, 348
SfuI TTCGAA 1 cut(s) 173
SinI GGWCC 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 435
Sse9I AATT 2 cut(s) 20, 169
SsiI CCGC 1 cut(s) 295
SstI GAGCTC 1 cut(s) 412
TaaI ACNGT 2 cut(s) 267, 331
TaqI TCGA 1 cut(s) 173
TasI AATT 2 cut(s) 20, 169
TfiI GAWTC 1 cut(s) 445
TscAI CASTG 1 cut(s) 324
TseI GCWGC 5 cut(s) 46, 88, 207, 228, 451
TspRI CASTG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 132
XapI RAATTY 1 cut(s) 169
XceI RCATGY 1 cut(s) 399
XmnI GAANNNNTTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.