Rorug02G0278200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015434
Physical Location & Seq
Forward (+)
30013476 .. 30014107
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0278200.1

Sequence Viewer

Length: 246 bp
ATGCCAAATCCATTCAATCTCCATACAGAGATGCAGATCCCACCAAAGCTAAAGCCCAAGGAATGCACACAACCGGAACCTTTCCAACTAGAGAGCTTACTGAGACTCTTTCTTTGGAGAGCCCTAAATAGTGCCATACCTACTATGTATAACCTGTTTCGAAGAAAAACTGCCAAGACTCCTATGTGTCCTATCTGTGGAAGTGCAATTGAAACAATGGAGTACATCCTTCTATTATGTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.41

Weight (kDa)

8.82

Isoelectric Point (pI)

63.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 34 - 81 5.6e-09 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48745
fragaria_vesca FvH4_5g16682 FvH4_6g26821
prunus_persica Prupe.5G224800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0179421
rosa_laevigata RLG00000005357 RLG00000018996
rosa_roxburghii Rroxscaffold_2G00115970 Rroxscaffold_3G00274050
rosa_rugosa Rorug02G0278200
rosa_samantha Rh7AG023700 Rh7BG023300 Rh7CG024700 Rh7DG024200
rosa_wichuraiana Rw2G026780 Rw7G001920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 31
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 16, 212
AluBI AGCT 2 cut(s) 49, 96
AluI AGCT 2 cut(s) 49, 96
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 1 cut(s) 31
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
AsuII TTCGAA 1 cut(s) 160
BanII GRGCYC 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 2 cut(s) 89, 244
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 21
Bpu14I TTCGAA 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 225
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 225
BsmI GAATGC 1 cut(s) 68
Bsp119I TTCGAA 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 1 cut(s) 31
BspT104I TTCGAA 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 225
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BtsCI GGATG 1 cut(s) 225
Csp6I GTAC 1 cut(s) 223
CviJI RGCY 4 cut(s) 49, 55, 96, 122
CviKI_1 RGCY 4 cut(s) 49, 55, 96, 122
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 57
FaiI YATR 6 cut(s) 24, 137, 146, 150, 185, 238
FaqI GGGAC 1 cut(s) 225
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 124
FspBI CTAG 2 cut(s) 89, 244
HapII CCGG 1 cut(s) 74
HinfI GANTC 2 cut(s) 105, 178
HpaII CCGG 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 239
HpyCH4V TGCA 3 cut(s) 34, 66, 206
HpyF3I CTNAG 1 cut(s) 101
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 2 cut(s) 87, 167
LweI GCATC 1 cut(s) 21
MaeI CTAG 2 cut(s) 89, 244
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 174
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 1 cut(s) 207
MlyI GAGTC 2 cut(s) 99, 172
MmeI TCCRAC 1 cut(s) 109
MspI CCGG 1 cut(s) 74
MunI CAATTG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 68
NdeII GATC 1 cut(s) 36
NlaIV GGNNCC 1 cut(s) 78
NspV TTCGAA 1 cut(s) 160
PctI GAATGC 1 cut(s) 68
PleI GAGTC 2 cut(s) 99, 172
PpsI GAGTC 2 cut(s) 99, 172
PspN4I GGNNCC 1 cut(s) 78
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
Sau3AI GATC 1 cut(s) 36
SchI GAGTC 2 cut(s) 99, 172
SduI GDGCHC 1 cut(s) 124
SetI ASST 5 cut(s) 51, 82, 98, 142, 156
SfaNI GCATC 1 cut(s) 21
SfuI TTCGAA 1 cut(s) 160
SgeI CNNG 5 cut(s) 70, 86, 101, 166, 187
Sse9I AATT 1 cut(s) 207
SspMI CTAG 2 cut(s) 89, 244
StyI CCWWGG 1 cut(s) 57
TaqI TCGA 1 cut(s) 160
TasI AATT 1 cut(s) 207
TatI WGTACW 1 cut(s) 222
XspI CTAG 2 cut(s) 89, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.