Rh7CG024700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015434
Physical Location & Seq
Forward (+)
1736580 .. 1736849
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG024700.1

Sequence Viewer

Length: 270 bp
ATGAATGCAAAGCCATCAAATTCTTCTTCTCAGGGAAGAAATTCGAAATGTGGTGATAATGCGCCAGAGTTTCTATGCAGCGCTTGCTTATGCATCTGCTGCCCGGTAATGATTGTCTGGTGGTGCATAAAGCTACCGTTCAAGGTGGGAGGGCACATTGCACGGCGGTATGCTTGTGGTTGTGGATCAGTGAAGAAGACAGTTTGTGCATCATACTCTACAGCATCTGATATTGATTTGGATGATCTGTCTGGTAAGCCAAATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.49

Weight (kDa)

8.57

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48745
fragaria_vesca FvH4_5g16682 FvH4_6g26821
prunus_persica Prupe.5G224800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0179421
rosa_laevigata RLG00000005357 RLG00000018996
rosa_roxburghii Rroxscaffold_2G00115970 Rroxscaffold_3G00274050
rosa_rugosa Rorug02G0278200
rosa_samantha Rh7AG023700 Rh7BG023300 Rh7CG024700 Rh7DG024200
rosa_wichuraiana Rw2G026780 Rw7G001920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 166
AclWI GGATC 1 cut(s) 193
AcsI RAATTY 2 cut(s) 19, 40
AfeI AGCGCT 1 cut(s) 82
AgsI TTSAA 1 cut(s) 142
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AlwI GGATC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 227
Aor51HI AGCGCT 1 cut(s) 82
ApeKI GCWGC 2 cut(s) 78, 99
ApoI RAATTY 2 cut(s) 19, 40
Asp700I GAANNNNTTC 1 cut(s) 40
AspLEI GCGC 2 cut(s) 64, 83
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 65
AsuII TTCGAA 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 203
BbvI GCAGC 2 cut(s) 86, 90
BccI CCATC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 179
BcnI CCSGG 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 84
BisI GCNGC 2 cut(s) 79, 100
BlsI GCNGC 2 cut(s) 80, 101
Bme1390I CCNGG 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 3 cut(s) 102, 218, 233
BpiI GAAGAC 1 cut(s) 203
Bpu14I TTCGAA 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 156
BseGI GGATG 1 cut(s) 247
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 2 cut(s) 86, 90
BsiSI CCGG 1 cut(s) 104
BsmI GAATGC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 185, 244
BspACI CCGC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 193
BspT104I TTCGAA 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 156
BssMI GATC 2 cut(s) 185, 244
Bst4CI ACNGT 2 cut(s) 138, 202
BstAPI GCANNNNNTGC 2 cut(s) 84, 99
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 2 cut(s) 64, 83
BstKTI GATC 2 cut(s) 188, 247
BstMBI GATC 2 cut(s) 185, 244
BstMWI GCNNNNNNNGC 2 cut(s) 84, 99
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 86, 90
BstV2I GAAGAC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 85
CaiI CAGNNNCTG 1 cut(s) 227
CfoI GCGC 2 cut(s) 64, 83
CviJI RGCY 3 cut(s) 13, 133, 259
CviKI_1 RGCY 3 cut(s) 13, 133, 259
DdeI CTNAG 1 cut(s) 30
DpnI GATC 2 cut(s) 187, 246
DpnII GATC 2 cut(s) 185, 244
Eco47III AGCGCT 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 95
FaiI YATR 5 cut(s) 76, 91, 128, 171, 214
Fnu4HI GCNGC 2 cut(s) 79, 100
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 79, 100
GlaI GCGC 2 cut(s) 63, 82
GluI GCNGC 2 cut(s) 79, 100
HaeII RGCGCY 1 cut(s) 84
HapII CCGG 1 cut(s) 104
HhaI GCGC 2 cut(s) 64, 83
Hin6I GCGC 2 cut(s) 62, 81
HinP1I GCGC 2 cut(s) 62, 81
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 229, 269
HpyCH4III ACNGT 2 cut(s) 138, 202
HpyCH4V TGCA 6 cut(s) 8, 78, 93, 126, 161, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 99
HpyF3I CTNAG 1 cut(s) 30
HspAI GCGC 2 cut(s) 62, 81
Kzo9I GATC 2 cut(s) 185, 244
LpnPI CCDG 5 cut(s) 17, 78, 103, 117, 237
Lsp1109I GCAGC 2 cut(s) 86, 90
LweI GCATC 3 cut(s) 102, 218, 233
MalI GATC 2 cut(s) 187, 246
MboI GATC 2 cut(s) 185, 244
MboII GAAGA 5 cut(s) 15, 18, 48, 205, 208
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 19, 40
MnlI CCTC 1 cut(s) 143
Mph1103I ATGCAT 1 cut(s) 95
MroXI GAANNNNTTC 1 cut(s) 40
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 84, 99
NciI CCSGG 1 cut(s) 104
NdeII GATC 2 cut(s) 185, 244
NsiI ATGCAT 1 cut(s) 95
NspV TTCGAA 1 cut(s) 44
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 40
PkrI GCNGC 2 cut(s) 80, 101
PstNI CAGNNNCTG 1 cut(s) 227
SatI GCNGC 2 cut(s) 79, 100
Sau3AI GATC 2 cut(s) 185, 244
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 156
SetI ASST 2 cut(s) 135, 147
SfaNI GCATC 3 cut(s) 102, 218, 233
SfcI CTRYAG 1 cut(s) 219
SfuI TTCGAA 1 cut(s) 44
Sse9I AATT 2 cut(s) 19, 40
SsiI CCGC 1 cut(s) 166
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 138, 202
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 19, 40
TscAI CASTG 1 cut(s) 195
TseI GCWGC 2 cut(s) 78, 99
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 195
XapI RAATTY 2 cut(s) 19, 40
XmnI GAANNNNTTC 1 cut(s) 40
Zsp2I ATGCAT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.