RLG00000005357

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015434
Physical Location & Seq
Reverse (-)
67051287 .. 67051968
682 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005357

Sequence Viewer

Length: 432 bp
ATGGGGGAGACACCATATTGGTCCTTTGAAGATAACTTGAAGCACTCTGAGACGTTTGTCTATTTCAATCCTTTTGAGATTTCGGTTGAAATGAATGCAAAGCCATCAAATTCTTCTTCTCAAGGAAGAAATTCGAAATGTGGTGATAATGCGCCAGAGTTTCTATGCAGTGCTTGCTTGTGCATCTGCTGCCCGGTAATGGTTGTCTGGTGGTGCATAAAGCTACCGTTCAAGGTGGGAGGGCACATTGCACGGCGGTATGCTTGTGGTTGTGGATCAGTGAAGAAGACAGTTTGTGTATCATACTCTACAGCATCTGATATTGATTTGGATGATCTGTCTGGTAAGCCAAATACATGCTCTCTGAGAGCTCCAAGAAGAAAGATGGCACATACTGATGTGGCTAATCAGCTGCAAAGCAAAAGAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.83

Weight (kDa)

8.49

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48745
fragaria_vesca FvH4_5g16682 FvH4_6g26821
prunus_persica Prupe.5G224800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0179421
rosa_laevigata RLG00000005357 RLG00000018996
rosa_roxburghii Rroxscaffold_2G00115970 Rroxscaffold_3G00274050
rosa_rugosa Rorug02G0278200
rosa_samantha Rh7AG023700 Rh7BG023300 Rh7CG024700 Rh7DG024200
rosa_wichuraiana Rw2G026780 Rw7G001920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 256
AclWI GGATC 1 cut(s) 283
AcsI RAATTY 2 cut(s) 109, 130
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 5 cut(s) 29, 40, 67, 89, 232
AluBI AGCT 3 cut(s) 223, 371, 412
AluI AGCT 3 cut(s) 223, 371, 412
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 2 cut(s) 2, 44
AlwI GGATC 1 cut(s) 283
AlwNI CAGNNNCTG 1 cut(s) 317
ApeKI GCWGC 2 cut(s) 189, 412
ApoI RAATTY 2 cut(s) 109, 130
Asp700I GAANNNNTTC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 155
AsuII TTCGAA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 246
BanII GRGCYC 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 2 cut(s) 176, 399
BccI CCATC 2 cut(s) 112, 379
BceAI ACGGC 1 cut(s) 269
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 2, 44
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 2 cut(s) 190, 413
BlsI GCNGC 2 cut(s) 191, 414
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 2 cut(s) 192, 323
BoxI GACNNNNGTC 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 293
Bpu14I TTCGAA 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 246
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 39, 356
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 2 cut(s) 176, 399
BsiHKAI GWGCWC 1 cut(s) 373
BsiSI CCGG 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 2, 44
BsmBI CGTCTC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 100
Bsp119I TTCGAA 1 cut(s) 134
Bsp1286I GDGCHC 2 cut(s) 246, 373
Bsp143I GATC 2 cut(s) 275, 334
BspACI CCGC 1 cut(s) 256
BspCNI CTCAG 2 cut(s) 40, 357
BspPI GGATC 1 cut(s) 283
BspT104I TTCGAA 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 246
BssMI GATC 2 cut(s) 275, 334
Bst4CI ACNGT 2 cut(s) 228, 292
BstAPI GCANNNNNTGC 2 cut(s) 174, 189
BstBI TTCGAA 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 48, 365
BstF5I GGATG 1 cut(s) 337
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 2 cut(s) 278, 337
BstMAI GTCTC 2 cut(s) 2, 44
BstMBI GATC 2 cut(s) 275, 334
BstMWI GCNNNNNNNGC 2 cut(s) 174, 189
BstNSI RCATGY 1 cut(s) 360
BstPAI GACNNNNGTC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 176, 399
BstV2I GAAGAC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 337
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 2 cut(s) 175, 285
Cac8I GCNNGC 1 cut(s) 175
CaiI CAGNNNCTG 1 cut(s) 317
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 21
CviAII CATG 1 cut(s) 357
CviJI RGCY 6 cut(s) 103, 223, 349, 371, 404, 412
CviKI_1 RGCY 6 cut(s) 103, 223, 349, 371, 404, 412
DdeI CTNAG 2 cut(s) 48, 365
DpnI GATC 2 cut(s) 277, 336
DpnII GATC 2 cut(s) 275, 334
Ecl136II GAGCTC 1 cut(s) 371
Eco24I GRGCYC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 373
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 1 cut(s) 360
FaiI YATR 7 cut(s) 16, 166, 218, 261, 304, 358, 393
FatI CATG 1 cut(s) 356
Fnu4HI GCNGC 2 cut(s) 190, 413
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 2 cut(s) 190, 413
GlaI GCGC 1 cut(s) 153
GluI GCNGC 2 cut(s) 190, 413
HapII CCGG 1 cut(s) 194
HhaI GCGC 1 cut(s) 154
Hin1II CATG 1 cut(s) 360
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HpaII CCGG 1 cut(s) 194
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 3 cut(s) 49, 319, 366
HpyCH4III ACNGT 2 cut(s) 228, 292
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 6 cut(s) 98, 168, 183, 216, 251, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 189
HpyF3I CTNAG 2 cut(s) 48, 365
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 1 cut(s) 360
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 2 cut(s) 275, 334
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 4 cut(s) 168, 193, 207, 327
Lsp1109I GCAGC 2 cut(s) 176, 399
LweI GCATC 2 cut(s) 192, 323
MaeII ACGT 1 cut(s) 53
MalI GATC 2 cut(s) 277, 336
MboI GATC 2 cut(s) 275, 334
MboII GAAGA 7 cut(s) 41, 105, 108, 138, 295, 298, 390
MhlI GDGCHC 2 cut(s) 246, 373
MluCI AATT 2 cut(s) 109, 130
MnlI CCTC 2 cut(s) 233, 419
MroXI GAANNNNTTC 1 cut(s) 130
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 194
Mva1269I GAATGC 1 cut(s) 100
MwoI GCNNNNNNNGC 2 cut(s) 174, 189
NciI CCSGG 1 cut(s) 194
NdeII GATC 2 cut(s) 275, 334
NlaIII CATG 1 cut(s) 360
NspI RCATGY 1 cut(s) 360
NspV TTCGAA 1 cut(s) 134
PctI GAATGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 130
PkrI GCNGC 2 cut(s) 191, 414
PshAI GACNNNNGTC 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 373
PspPI GGNCC 1 cut(s) 21
PstNI CAGNNNCTG 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 396
SacI GAGCTC 1 cut(s) 373
SatI GCNGC 2 cut(s) 190, 413
Sau3AI GATC 2 cut(s) 275, 334
Sau96I GGNCC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 2 cut(s) 246, 373
SetI ASST 5 cut(s) 56, 225, 237, 373, 414
SfaNI GCATC 2 cut(s) 192, 323
SfcI CTRYAG 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 134
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 2 cut(s) 109, 130
SsiI CCGC 1 cut(s) 256
SstI GAGCTC 1 cut(s) 373
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 2 cut(s) 228, 292
TaiI ACGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 134
TasI AATT 2 cut(s) 109, 130
TscAI CASTG 2 cut(s) 175, 285
TseI GCWGC 2 cut(s) 189, 412
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 2 cut(s) 175, 285
VpaK11BI GGWCC 1 cut(s) 21
XapI RAATTY 2 cut(s) 109, 130
XceI RCATGY 1 cut(s) 360
XmnI GAANNNNTTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.