AT1G48910

L-lysine 6-monooxygenase (NADPH-requiring)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009002
Physical Location & Seq
Forward (+)
18091681 .. 18093878
2198 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48910.1

Sequence Viewer

Length: 1152 bp
ATGGAGACCGTAGTGGTGATTGTGGGAGCTGGACCGGCCGGTTTAGCAACATCGGTTTGTCTAAACCAACACTCAATCCCAAACGTGATCCTCGAGAAAGAAGACATCTATGCATCCCTTTGGAAGAAACGAGCGTACGATCGTCTCAAACTTCACTTAGCCAAAGAATTTTGCCAGCTTCCTTTCATGCCACACGGTCGTGAGGTTCCAACCTTTATGTCCAAAGAGCTTTTCGTCAACTACCTTGACGCTTACGTTGCCCGTTTCGACATCAACCCTAGGTACAACCGTACCGTGAAGTCCTCAACGTTCGATGAGTCCAATAACAAGTGGAGGGTCGTGGCCGAAAACACGGTAACCGGAGAAACCGAGGTGTATTGGTCGGAGTTTCTGGTGGTTGCGACCGGGGAGAACGGAGATGGGAATATTCCGATGGTGGAGGGGATTGACACTTTTGGGGGAGAGATTATGCACTCGAGTGAGTACAAGTCCGGTCGTGATTTTAAAGATAAAAATGTTCTTGTGGTCGGAGGTGGAAATTCCGGTATGGAGATTAGTTTTGATCTTTGCAACTTCGGAGCTAATACGACCATTCTAATTAGAACTCCAAGACACGTGGTGACTAAAGAAGTGATACACTTGGGGATGACACTTCTGAAGTATGCTCCAGTGGCGATGGTCGACACATTGGTGACGACTATGGCAAAAATTTTGTACGGAGATCTCTCCAAGTACGGACTCTTCCGACCAAAACAAGGTCCTTTCGCCACCAAACTCTTTACCGGAAAAGCTCCTGTCATTGATGTTGGAACTGTCGAGAAGATTCGCGATGGCGAGATTCAGGTTATCAATGGTGGGATTGGAAGCATCAACGGGAAGACCTTGACGTTCGAAAACGGACATAAACAAGATTTCGATGCGATTGTGTTTGCTACTGGTTACAAAAGCTCCGTTTGCAATTGGTTAGAGGACTATGAATACGTGATGAAGAAGGATGGATTCCCCAAAGCACCGATGCCAAAACATTGGAAAGGAGAGAAGAATCTTTACTGTGCCGGATTTTCAAGAAAAGGAATCGCCGGAGGTGCTGAGGATGCTATGTCTGTAGCCGACGACATCAGATCTATCTTGGCTACCTTAAAAAATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

383

Amino Acids

42.39

Weight (kDa)

6.72

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 5 - 318 1.6e-23 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 5 - 207 1.8e-16 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 6 - 203 3.6e-25 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 72 - 199 1.5e-11 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 681
AccII CGCG 1 cut(s) 828
AclI AACGTT 1 cut(s) 308
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 2 cut(s) 36, 342
AcsI RAATTY 3 cut(s) 167, 538, 708
AcuI CTGAAG 1 cut(s) 677
AcvI CACGTG 1 cut(s) 616
AdeI CACNNNGTG 1 cut(s) 619
AfaI GTAC 6 cut(s) 137, 284, 292, 485, 716, 734
AfiI CCNNNNNNNGG 1 cut(s) 755
AflIII ACRYGT 1 cut(s) 613
AgsI TTSAA 1 cut(s) 1065
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AleI CACNNNNGTG 3 cut(s) 198, 477, 689
AluBI AGCT 6 cut(s) 29, 178, 229, 581, 791, 948
AluI AGCT 6 cut(s) 29, 178, 229, 581, 791, 948
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 82
Ama87I CYCGRG 2 cut(s) 92, 475
AoxI GGCC 2 cut(s) 36, 342
ApoI RAATTY 3 cut(s) 167, 538, 708
AspA2I CCTAGG 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 32, 758
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 3 cut(s) 28, 631, 703
AsuII TTCGAA 1 cut(s) 891
AvaI CYCGRG 2 cut(s) 92, 475
AvaII GGWCC 2 cut(s) 32, 758
AvrII CCTAGG 1 cut(s) 278
BaeI ACNNNNGTAYC 4 cut(s) 274, 274, 307, 307
BarI GAAGNNNNNNTAC 4 cut(s) 725, 757, 1031, 1063
BbrPI CACGTG 1 cut(s) 616
BbsI GAAGAC 2 cut(s) 108, 884
BbvCI CCTCAGC 1 cut(s) 1089
BccI CCATC 5 cut(s) 413, 427, 670, 824, 989
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 1104
BglII AGATCT 2 cut(s) 721, 1121
BlnI CCTAGG 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 406
Bme18I GGWCC 2 cut(s) 32, 758
BmeT110I CYCGRG 2 cut(s) 92, 475
BmgT120I GGNCC 2 cut(s) 32, 758
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 406
BmsI GCATC 5 cut(s) 122, 876, 907, 1005, 1084
BpiI GAAGAC 2 cut(s) 108, 884
BpmI CTGGAG 1 cut(s) 651
Bpu10I CCTNAGC 1 cut(s) 1089
Bpu14I TTCGAA 1 cut(s) 891
BpuMI CCSGG 1 cut(s) 406
BsaAI YACGTR 2 cut(s) 616, 982
BsaJI CCNNGG 3 cut(s) 278, 369, 405
BsaWI WCCGGW 4 cut(s) 359, 491, 542, 782
BsaXI ACNNNNNCTCC 2 cut(s) 932, 962
Bsc4I CCNNNNNNNGG 1 cut(s) 755
Bse118I RCCGGY 2 cut(s) 34, 38
Bse1I ACTGG 2 cut(s) 668, 940
BseDI CCNNGG 3 cut(s) 278, 369, 405
BseGI GGATG 4 cut(s) 113, 651, 1000, 1099
BseLI CCNNNNNNNGG 1 cut(s) 755
BseMII CTCAG 1 cut(s) 1080
BseNI ACTGG 2 cut(s) 668, 940
BseX3I CGGCCG 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 828
Bsh1285I CGRYCG 5 cut(s) 39, 142, 199, 405, 496
BshFI GGCC 2 cut(s) 38, 344
BsiEI CGRYCG 5 cut(s) 39, 142, 199, 405, 496
BsiHKCI CYCGRG 2 cut(s) 92, 475
BsiSI CCGG 9 cut(s) 35, 39, 360, 405, 492, 543, 783, 1056, 1080
BsiWI CGTACG 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 755
BsmAI GTCTC 1 cut(s) 149
BsmBI CGTCTC 1 cut(s) 149
BsnI GGCC 2 cut(s) 38, 344
BsoBI CYCGRG 2 cut(s) 92, 475
Bsp119I TTCGAA 1 cut(s) 891
Bsp143I GATC 5 cut(s) 87, 139, 562, 721, 1121
Bsp68I TCGCGA 1 cut(s) 828
BspANI GGCC 2 cut(s) 38, 344
BspCNI CTCAG 1 cut(s) 1081
BspFNI CGCG 1 cut(s) 828
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 891
BsrFI RCCGGY 2 cut(s) 34, 38
BsrI ACTGG 2 cut(s) 668, 940
BssAI RCCGGY 2 cut(s) 34, 38
BssECI CCNNGG 3 cut(s) 278, 369, 405
BssMI GATC 5 cut(s) 87, 139, 562, 721, 1121
BssT1I CCWWGG 1 cut(s) 278
Bst4CI ACNGT 7 cut(s) 10, 197, 290, 295, 355, 814, 1052
Bst6I CTCTTC 1 cut(s) 746
BstBAI YACGTR 2 cut(s) 616, 982
BstBI TTCGAA 1 cut(s) 891
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 157, 1089
BstEII GGTNACC 1 cut(s) 355
BstF5I GGATG 4 cut(s) 113, 651, 1000, 1099
BstFNI CGCG 1 cut(s) 828
BstKTI GATC 5 cut(s) 90, 142, 565, 724, 1124
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 5 cut(s) 87, 139, 562, 721, 1121
BstMCI CGRYCG 5 cut(s) 39, 142, 199, 405, 496
BstMWI GCNNNNNNNGC 7 cut(s) 35, 44, 257, 671, 954, 1085, 1094
BstPI GGTNACC 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 404
BstSFI CTRYAG 1 cut(s) 1104
BstUI CGCG 1 cut(s) 828
BstV2I GAAGAC 2 cut(s) 108, 884
BstX2I RGATCY 2 cut(s) 721, 1121
BstXI CCANNNNNNTGG 1 cut(s) 1026
BstYI RGATCY 2 cut(s) 721, 1121
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 2 cut(s) 38, 344
BtgZI GCGATG 2 cut(s) 689, 843
BtsCI GGATG 4 cut(s) 113, 651, 1000, 1099
BtsIMutI CAGTG 1 cut(s) 675
BtuMI TCGCGA 1 cut(s) 828
Cac8I GCNNGC 1 cut(s) 176
Cfr10I RCCGGY 2 cut(s) 34, 38
Cfr13I GGNCC 2 cut(s) 32, 758
CseI GACGC 1 cut(s) 257
Csp6I GTAC 6 cut(s) 136, 283, 291, 484, 715, 733
CspCI CAANNNNNGTGG 2 cut(s) 597, 632
CviAII CATG 1 cut(s) 187
CviQI GTAC 6 cut(s) 136, 283, 291, 484, 715, 733
DdeI CTNAG 2 cut(s) 157, 1089
DpnI GATC 5 cut(s) 89, 141, 564, 723, 1123
DpnII GATC 5 cut(s) 87, 139, 562, 721, 1121
DraI TTTAAA 1 cut(s) 505
DraIII CACNNNGTG 1 cut(s) 619
EaeI YGGCCR 2 cut(s) 36, 342
EagI CGGCCG 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 746
EarI CTCTTC 1 cut(s) 746
EclXI CGGCCG 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 278
Eco47I GGWCC 2 cut(s) 32, 758
Eco52I CGGCCG 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 677
Eco72I CACGTG 1 cut(s) 616
Eco88I CYCGRG 2 cut(s) 92, 475
Eco91I GGTNACC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 758
EcoO65I GGTNACC 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 278
EcoT22I ATGCAT 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 278
Esp3I CGTCTC 1 cut(s) 149
FaeI CATG 1 cut(s) 190
FatI CATG 1 cut(s) 186
FblI GTMKAC 1 cut(s) 681
FokI GGATG 4 cut(s) 100, 658, 1007, 1106
FspBI CTAG 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 2 cut(s) 38, 344
HapII CCGG 9 cut(s) 35, 39, 360, 405, 492, 543, 783, 1056, 1080
HgaI GACGC 1 cut(s) 257
Hin1II CATG 1 cut(s) 190
HincII GTYRAC 2 cut(s) 238, 682
HindII GTYRAC 2 cut(s) 238, 682
HinfI GANTC 7 cut(s) 317, 738, 823, 838, 999, 1042, 1074
HpaII CCGG 9 cut(s) 35, 39, 360, 405, 492, 543, 783, 1056, 1080
HphI GGTGA 3 cut(s) 28, 631, 703
Hpy166II GTNNAC 2 cut(s) 238, 682
Hpy188I TCNGA 7 cut(s) 385, 432, 530, 578, 657, 746, 1121
Hpy188III TCNNGA 6 cut(s) 94, 200, 497, 817, 827, 1065
Hpy8I GTNNAC 2 cut(s) 238, 682
Hpy99I CGWCG 1 cut(s) 1115
HpyAV CCTTC 1 cut(s) 985
HpyCH4III ACNGT 7 cut(s) 10, 197, 290, 295, 355, 814, 1052
HpyCH4IV ACGT 6 cut(s) 84, 255, 308, 615, 887, 981
HpyCH4V TGCA 4 cut(s) 113, 472, 570, 957
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 44, 257, 671, 954, 1085, 1094
HpyF3I CTNAG 2 cut(s) 157, 1089
HpySE526I ACGT 6 cut(s) 84, 255, 308, 615, 887, 981
Hsp92II CATG 1 cut(s) 190
Kzo9I GATC 5 cut(s) 87, 139, 562, 721, 1121
LmnI GCTCC 5 cut(s) 26, 578, 670, 796, 953
LweI GCATC 5 cut(s) 122, 876, 907, 1005, 1084
MaeI CTAG 1 cut(s) 279
MaeII ACGT 6 cut(s) 84, 255, 308, 615, 887, 981
MaeIII GTNAC 4 cut(s) 355, 619, 691, 938
MalI GATC 5 cut(s) 89, 141, 564, 723, 1123
MboI GATC 5 cut(s) 87, 139, 562, 721, 1121
MboII GAAGA 7 cut(s) 113, 136, 733, 832, 889, 1000, 1051
MfeI CAATTG 1 cut(s) 958
MflI RGATCY 2 cut(s) 721, 1121
MluCI AATT 6 cut(s) 167, 538, 597, 708, 958, 1147
MlyI GAGTC 2 cut(s) 326, 732
MmeI TCCRAC 5 cut(s) 233, 363, 508, 769, 787
Mph1103I ATGCAT 1 cut(s) 115
MseI TTAA 2 cut(s) 504, 1139
MslI CAYNNNNRTG 3 cut(s) 198, 477, 689
MspI CCGG 9 cut(s) 35, 39, 360, 405, 492, 543, 783, 1056, 1080
MspR9I CCNGG 1 cut(s) 406
MunI CAATTG 1 cut(s) 958
MvnI CGCG 1 cut(s) 828
MwoI GCNNNNNNNGC 7 cut(s) 35, 44, 257, 671, 954, 1085, 1094
NciI CCSGG 1 cut(s) 406
NdeII GATC 5 cut(s) 87, 139, 562, 721, 1121
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 2 cut(s) 619, 691
NruI TCGCGA 1 cut(s) 828
NsiI ATGCAT 1 cut(s) 115
NspV TTCGAA 1 cut(s) 891
OliI CACNNNNGTG 3 cut(s) 198, 477, 689
PaeR7I CTCGAG 2 cut(s) 92, 475
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 5 cut(s) 823, 838, 999, 1042, 1074
Pfl23II CGTACG 1 cut(s) 135
Ple19I CGATCG 1 cut(s) 142
PleI GAGTC 2 cut(s) 325, 732
PmaCI CACGTG 1 cut(s) 616
PmlI CACGTG 1 cut(s) 616
PpsI GAGTC 2 cut(s) 325, 732
Ppu21I YACGTR 2 cut(s) 616, 982
PpuMI RGGWCCY 1 cut(s) 758
Psp1406I AACGTT 1 cut(s) 308
Psp5II RGGWCCY 1 cut(s) 758
PspCI CACGTG 1 cut(s) 616
PspEI GGTNACC 1 cut(s) 355
PspLI CGTACG 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 2 cut(s) 32, 758
PspPPI RGGWCCY 1 cut(s) 758
PspXI VCTCGAGB 1 cut(s) 475
PsuI RGATCY 2 cut(s) 721, 1121
PvuI CGATCG 1 cut(s) 142
RruI TCGCGA 1 cut(s) 828
RsaI GTAC 6 cut(s) 137, 284, 292, 485, 716, 734
RsaNI GTAC 6 cut(s) 136, 283, 291, 484, 715, 733
RseI CAYNNNNRTG 3 cut(s) 198, 477, 689
SalI GTCGAC 1 cut(s) 680
SaqAI TTAA 2 cut(s) 504, 1139
Sau3AI GATC 5 cut(s) 87, 139, 562, 721, 1121
Sau96I GGNCC 2 cut(s) 32, 758
SchI GAGTC 2 cut(s) 326, 732
ScrFI CCNGG 1 cut(s) 406
SfaNI GCATC 5 cut(s) 122, 876, 907, 1005, 1084
SfcI CTRYAG 1 cut(s) 1104
Sfr274I CTCGAG 2 cut(s) 92, 475
SfuI TTCGAA 1 cut(s) 891
SinI GGWCC 2 cut(s) 32, 758
SlaI CTCGAG 2 cut(s) 92, 475
SmiMI CAYNNNNRTG 3 cut(s) 198, 477, 689
SmlI CTYRAG 2 cut(s) 92, 475
SmoI CTYRAG 2 cut(s) 92, 475
Sse9I AATT 6 cut(s) 167, 538, 597, 708, 958, 1147
SspI AATATT 1 cut(s) 427
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 404
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 7 cut(s) 10, 197, 290, 295, 355, 814, 1052
TaiI ACGT 6 cut(s) 87, 258, 311, 618, 890, 984
TaqI TCGA 8 cut(s) 93, 267, 312, 476, 681, 816, 891, 915
TasI AATT 6 cut(s) 167, 538, 597, 708, 958, 1147
TatI WGTACW 1 cut(s) 483
TfiI GAWTC 5 cut(s) 823, 838, 999, 1042, 1074
Tru1I TTAA 2 cut(s) 504, 1139
Tru9I TTAA 2 cut(s) 504, 1139
TscAI CASTG 1 cut(s) 675
TseFI GTSAC 2 cut(s) 619, 691
Tsp45I GTSAC 2 cut(s) 619, 691
TspDTI ATGAA 3 cut(s) 175, 990, 1001
TspGWI ACGGA 5 cut(s) 429, 732, 750, 912, 940
TspRI CASTG 1 cut(s) 675
VpaK11BI GGWCC 2 cut(s) 32, 758
XapI RAATTY 3 cut(s) 167, 538, 708
XhoI CTCGAG 2 cut(s) 92, 475
XmaJI CCTAGG 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 681
XspI CTAG 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.