Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009002

Physical Location & Seq

Genomic Coordinates Reverse (-)

14091690 .. 14092599

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G157400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTTGGCATTGGCATGCTTCTGTCGAATTACCTCCCACTGAAAATAGTGGACAAGTTTGTGTCACTGCTTGCCAAGTTGAGCTACAGTGATTTGTCCAGCTATGGCATTCATCGCCCAGTTGAAGGGCCATTTCTCTTTAAAGCCCTTACCGGAAAGACTCCAGTAATTGATCGTGGAACCATCAAGAAAATTCGCTCCAAAAAGATTCAGGTTTTTCCAGATGTGGTGAGTATAAACCAGAACACTGTGGAATTCAAAGATGGTAAACGACGGTGTTTTGATGCTATTGTGTTGGCAACTGGTTACAGAAGCGTAGCACATAAATGGTTGAAGGACTACAAGTTCCTTCTTACAGATGATGGAAAGCCTAAAGGGAAGTACCCAAACCATTGGAAGGGCGAGAAAGGTGTCTATTGTGTTGGATTAACAGGGAAGGGACTGCCAGGGATTTTCAAAGATTCAAAGGCTGTAACTGAAGACATCTATCGACTTACATTAATGGCACAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

172

Amino Acids

19.19

Weight (kDa)

9.81

Isoelectric Point (pI)

11.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48910
fragaria_vesca	FvH4_4g17980
malus_domestica	MD15G1133800.v1.1
prunus_persica	Prupe.6G157400_v2.0.a1 Prupe.6G157500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422151 RchiOBHm_Chr4g0422171
rosa_laevigata	RLG00000007629 RLG00000007630
rosa_multiflora	Rmu_co8426579.1_g000001 Rmu_sc0004902.1_g000002 Rmu_sc0009286.1_g000009
rosa_roxburghii	Rroxscaffold_5G00364300
rosa_rugosa	Rorug04G0177600 Rorug04G0177700
rosa_samantha	Rh4AG237300 Rh4AG237400 Rh4BG240100 Rh4BG240400 Rh4CG252000 Rh4CG252300
rosa_wichuraiana	Rw4G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	192, 254
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	2 cut(s)	125, 397
AgsI	TTSAA	5 cut(s)	125, 259, 334, 457, 465
AjnI	CCWGG	1 cut(s)	445
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	2 cut(s)	84, 102
AluI	AGCT	2 cut(s)	84, 102
AoxI	GGCC	1 cut(s)	128
ApoI	RAATTY	2 cut(s)	192, 254
AseI	ATTAAT	1 cut(s)	500
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	486
BccI	CCATC	3 cut(s)	191, 257, 356
BciT130I	CCWGG	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	274
BmuI	ACTGGG	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	486
BpmI	CTGGAG	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 397
Bse1I	ACTGG	3 cut(s)	119, 164, 307
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	446
BseLI	CCNNNNNNNGG	2 cut(s)	125, 397
BseNI	ACTGG	3 cut(s)	119, 164, 307
BshFI	GGCC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	2 cut(s)	125, 397
BsmFI	GGGAC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	172
BspANI	GGCC	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	181
BsrI	ACTGG	3 cut(s)	119, 164, 307
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	3 cut(s)	89, 250, 276
BstC8I	GCNNGC	2 cut(s)	17, 72
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	445
BstSFI	CTRYAG	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	486
BstXI	CCANNNNNNTGG	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	130
BtgZI	GCGATG	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	4 cut(s)	38, 65, 94, 246
Cac8I	GCNNGC	2 cut(s)	17, 72
Cfr13I	GGNCC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	6 cut(s)	84, 102, 130, 146, 370, 470
CviKI_1	RGCY	6 cut(s)	84, 102, 130, 146, 370, 470
CviQI	GTAC	1 cut(s)	382
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
DraI	TTTAAA	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	498
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	445
FaeI	CATG	1 cut(s)	19
FaiI	YATR	4 cut(s)	17, 105, 236, 324
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	1 cut(s)	19
HinfI	GANTC	3 cut(s)	160, 208, 461
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	52, 269
Hpy188III	TCNNGA	2 cut(s)	187, 221
Hpy8I	GTNNAC	2 cut(s)	52, 269
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	5 cut(s)	119, 328, 359, 391, 430
HpyCH4III	ACNGT	3 cut(s)	89, 250, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	203
LweI	GCATC	1 cut(s)	274
MaeIII	GTNAC	3 cut(s)	63, 305, 472
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	491
MluCI	AATT	4 cut(s)	28, 168, 192, 254
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	1 cut(s)	44
MseI	TTAA	3 cut(s)	141, 428, 500
MslI	CAYNNNNRTG	2 cut(s)	14, 325
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	114
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	63
NspI	RCATGY	1 cut(s)	19
PaeI	GCATGC	1 cut(s)	19
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	208, 461
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	128
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	2 cut(s)	14, 325
SaqAI	TTAA	3 cut(s)	141, 428, 500
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	447
SetI	ASST	5 cut(s)	36, 86, 104, 216, 412
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	85
SmiMI	CAYNNNNRTG	2 cut(s)	14, 325
SphI	GCATGC	1 cut(s)	19
Sse9I	AATT	4 cut(s)	28, 168, 192, 254
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	3 cut(s)	89, 250, 276
TaqI	TCGA	2 cut(s)	26, 490
TasI	AATT	4 cut(s)	28, 168, 192, 254
TfiI	GAWTC	2 cut(s)	208, 461
Tru1I	TTAA	3 cut(s)	141, 428, 500
Tru9I	TTAA	3 cut(s)	141, 428, 500
TscAI	CASTG	4 cut(s)	45, 72, 94, 253
TseFI	GTSAC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	4 cut(s)	45, 72, 94, 253
VspI	ATTAAT	1 cut(s)	500
XapI	RAATTY	2 cut(s)	192, 254
XceI	RCATGY	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.