Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8426579.1

Orthogroup ID

OG0009002

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 710

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8426579.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgggttcttgcaaagacccgaaaccgaattgtgggttcgttgaagggcctataatcgtaggtgcaggaccatccggtctcgcagtagctgcttgcttatccaaccatggcgtcccttatttgattcttgagaaaagcaactgcatagcttctctatggcaacaaaagacttacgaacgactcaaacttcatcttcccaaacagttttgccagcttcctctcgtggggttccctgaagatttcccaaaataccccacaaagtaccagttcatttcctacatggagtcctatgcttcccaattctcaatcaagccgaggttcaaccaggccgtccaaaacgctgcgtttgattcggcgtcgaggctctggagggttcagacccaagatttcgagtacatttcccggtggcttattgtggccacgggagaaaatgccgagccggtgattcccgatattcatgggattgacaagtttaaaggtcagattattcataccagtttgtacaaatctggggctgatttcagaaatcaaagggttttggttattgggtgtgggaattctggtatggaagtcagcttagacctttgcagatcatacaatgcaatccctcatatggttgttaggaacact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009850 GO:0009851 GO:0009909 GO:0009911 GO:0009987 GO:0010154 GO:0010229 GO:0010817 GO:0012505 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0022414 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0047434 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0090567 GO:0098588 GO:0098791 GO:0098827 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like Pyr_redox_3

Protein Analysis

210

Amino Acids

23.49

Weight (kDa)

8.64

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48910
fragaria_vesca	FvH4_4g17980
malus_domestica	MD15G1133800.v1.1
prunus_persica	Prupe.6G157400_v2.0.a1 Prupe.6G157500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422151 RchiOBHm_Chr4g0422171
rosa_laevigata	RLG00000007629 RLG00000007630
rosa_multiflora	Rmu_co8426579.1_g000001 Rmu_sc0004902.1_g000002 Rmu_sc0009286.1_g000009
rosa_roxburghii	Rroxscaffold_5G00364300
rosa_rugosa	Rorug04G0177600 Rorug04G0177700
rosa_samantha	Rh4AG237300 Rh4AG237400 Rh4BG240100 Rh4BG240400 Rh4CG252000 Rh4CG252300
rosa_wichuraiana	Rw4G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	255
AcyI	GRCGYC	2 cut(s)	111, 356
AfaI	GTAC	3 cut(s)	263, 395, 503
AfiI	CCNNNNNNNGG	3 cut(s)	32, 224, 613
AgsI	TTSAA	2 cut(s)	44, 322
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	4 cut(s)	89, 149, 214, 576
AluI	AGCT	4 cut(s)	89, 149, 214, 576
Alw26I	GTCTC	1 cut(s)	83
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	3 cut(s)	47, 327, 417
ApeKI	GCWGC	2 cut(s)	89, 341
ApoI	RAATTY	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	47, 68
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	419
BauI	CACGAG	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	76, 328
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	83
BisI	GCNGC	2 cut(s)	90, 342
BlsI	GCNGC	2 cut(s)	91, 343
Bme1390I	CCNGG	2 cut(s)	326, 403
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	47, 68
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	2 cut(s)	326, 403
BpmI	CTGGAG	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	403
BsaHI	GRCGYC	2 cut(s)	111, 356
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	106, 314, 420
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 224, 613
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	265, 495
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	3 cut(s)	106, 314, 420
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	3 cut(s)	32, 224, 613
BseNI	ACTGG	2 cut(s)	265, 495
BseXI	GCAGC	2 cut(s)	76, 328
BsgI	GTGCAG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	49, 329, 419
BsiSI	CCGG	3 cut(s)	75, 403, 440
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	3 cut(s)	32, 224, 613
BsmAI	GTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	49, 329, 419
Bso31I	GGTCTC	1 cut(s)	83
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	1 cut(s)	590
Bsp19I	CCATGG	1 cut(s)	106
BspANI	GGCC	3 cut(s)	49, 329, 419
BspLI	GGNNCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	439
BsrGI	TGTACA	1 cut(s)	501
BsrI	ACTGG	2 cut(s)	265, 495
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	3 cut(s)	106, 314, 420
BssMI	GATC	1 cut(s)	590
BssNI	GRCGYC	2 cut(s)	111, 356
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	106
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	204
BstACI	GRCGYC	2 cut(s)	111, 356
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	501
BstC8I	GCNNGC	2 cut(s)	94, 212
BstDEI	CTNAG	1 cut(s)	577
BstDSI	CCRYGG	2 cut(s)	106, 420
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	593
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	590
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	324, 401
BstV1I	GCAGC	2 cut(s)	76, 328
BsuRI	GGCC	3 cut(s)	49, 329, 419
BtgI	CCRYGG	2 cut(s)	106, 420
BtsCI	GGATG	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	94, 212
CaiI	CAGNNNCTG	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	439
Cfr13I	GGNCC	2 cut(s)	47, 68
CseI	GACGC	2 cut(s)	100, 345
Csp6I	GTAC	3 cut(s)	262, 394, 502
CviAII	CATG	3 cut(s)	107, 280, 458
CviQI	GTAC	3 cut(s)	262, 394, 502
DdeI	CTNAG	1 cut(s)	577
DpnI	GATC	1 cut(s)	592
DpnII	GATC	1 cut(s)	590
DraI	TTTAAA	1 cut(s)	475
DrdI	GACNNNNNNGTC	1 cut(s)	75
DseDI	GACNNNNNNGTC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	3 cut(s)	110, 283, 461
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	3 cut(s)	106, 279, 457
FauNDI	CATATG	1 cut(s)	612
Fnu4HI	GCNGC	2 cut(s)	90, 342
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	2 cut(s)	90, 342
GluI	GCNGC	2 cut(s)	90, 342
GsuI	CTGGAG	1 cut(s)	388
HaeIII	GGCC	3 cut(s)	49, 329, 419
HapII	CCGG	3 cut(s)	75, 403, 440
HgaI	GACGC	2 cut(s)	100, 345
Hin1I	GRCGYC	2 cut(s)	111, 356
Hin1II	CATG	3 cut(s)	110, 283, 461
HinfI	GANTC	5 cut(s)	124, 180, 284, 350, 445
HpaII	CCGG	3 cut(s)	75, 403, 440
HphI	GGTGA	1 cut(s)	454
Hpy188I	TCNGA	3 cut(s)	378, 483, 524
Hpy188III	TCNNGA	3 cut(s)	128, 367, 449
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4V	TGCA	5 cut(s)	12, 65, 144, 588, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	577
Hsp92I	GRCGYC	2 cut(s)	111, 356
Hsp92II	CATG	3 cut(s)	110, 283, 461
Kzo9I	GATC	1 cut(s)	590
Lsp1109I	GCAGC	2 cut(s)	76, 328
MalI	GATC	1 cut(s)	592
MboI	GATC	1 cut(s)	590
MboII	GAAGA	2 cut(s)	185, 248
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	3 cut(s)	28, 299, 556
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	2 cut(s)	174, 293
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	5 cut(s)	228, 309, 354, 363, 618
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	419
MspI	CCGG	3 cut(s)	75, 403, 440
MspR9I	CCNGG	2 cut(s)	326, 403
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	106
NdeI	CATATG	1 cut(s)	612
NdeII	GATC	1 cut(s)	590
NlaIII	CATG	3 cut(s)	110, 283, 461
NlaIV	GGNNCC	1 cut(s)	230
NmeAIII	GCCGAG	2 cut(s)	339, 460
PfeI	GAWTC	3 cut(s)	124, 350, 445
PkrI	GCNGC	2 cut(s)	91, 343
PleI	GAGTC	2 cut(s)	174, 292
PpsI	GAGTC	2 cut(s)	174, 292
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	2 cut(s)	47, 68
PstNI	CAGNNNCTG	1 cut(s)	89
RsaI	GTAC	3 cut(s)	263, 395, 503
RsaNI	GTAC	3 cut(s)	262, 394, 502
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	2 cut(s)	90, 342
Sau3AI	GATC	1 cut(s)	590
Sau96I	GGNCC	2 cut(s)	47, 68
SchI	GAGTC	2 cut(s)	174, 293
ScrFI	CCNGG	2 cut(s)	326, 403
SetI	ASST	8 cut(s)	64, 91, 151, 216, 320, 481, 578, 585
SinI	GGWCC	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	3 cut(s)	28, 299, 556
StyD4I	CCNGG	2 cut(s)	324, 401
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	359, 390
TasI	AATT	3 cut(s)	28, 299, 556
TatI	WGTACW	2 cut(s)	393, 501
TfiI	GAWTC	3 cut(s)	124, 350, 445
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseI	GCWGC	2 cut(s)	89, 341
TspDTI	ATGAA	4 cut(s)	179, 259, 446, 479
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.