Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009002

Physical Location & Seq

Genomic Coordinates Reverse (-)

14093728 .. 14095013

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G157500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCGGAGGAGGTGATTCTGATCATGGAGGATGAGAATAATAACAATAATAGTAATAGTAATAATAATATTAGTGTGTCGGTGGTGATAGTAGGAGCTGGTCCTTCTGGCATTGCTACCTCCGCCTTGCTCAATTCTCTGTCAGTTTCAAATCTTGTGCTTGAGAAGGAAGACTGTTGTGGGTCCCTCTGGAAGAAGCGGTCCTACGACCGTCTGAATCTTCACTTGGCAAAGAGCTTCTGCAGTTTGCCGATGATGTCCCATCCCTTCCGAACCTCCATTTTCATGTCGAAAGACGACTTCATTCGTTACCTGGACGAGTACGTGGCCAGGTTCAACGTGAACCCTCGCTACTGCAATGACGTGGAGGAGGCTGTTTACGATGAAGAGGAAGGCAAGTGGAGGGTGACAGTGAAAGACACCGCTTCCGGGACGGTGTATGAGATCGCATCGGATTTCTTGGTGGTTGCAACTGGAGAAAATAGCCAGCCTTTTCTCCCCAGCGACTTGCCTGGGATGGAGACCTTCACAGGAAAGGTGGTTCATTCCAGTGACTATAAAAACGGGGCCGTTTTTAAAGATGAAAAGGTTTTGGTAATTGGCTGTGGCAATTCTGGGATGGAAATCAGCAACGATCTTGCAGATAATGGAGCACACACGTCCCATTGTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

225

Amino Acids

24.64

Weight (kDa)

4.68

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48910
fragaria_vesca	FvH4_4g17980
malus_domestica	MD15G1133800.v1.1
prunus_persica	Prupe.6G157400_v2.0.a1 Prupe.6G157500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422151 RchiOBHm_Chr4g0422171
rosa_laevigata	RLG00000007629 RLG00000007630
rosa_multiflora	Rmu_co8426579.1_g000001 Rmu_sc0004902.1_g000002 Rmu_sc0009286.1_g000009
rosa_roxburghii	Rroxscaffold_5G00364300
rosa_rugosa	Rorug04G0177600 Rorug04G0177700
rosa_samantha	Rh4AG237300 Rh4AG237400 Rh4BG240100 Rh4BG240400 Rh4CG252000 Rh4CG252300
rosa_wichuraiana	Rw4G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 123, 199, 423
AcoI	YGGCCR	1 cut(s)	327
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	429
AflIII	ACRYGT	1 cut(s)	657
AgsI	TTSAA	2 cut(s)	150, 337
AjiI	CACGTC	2 cut(s)	364, 660
AjnI	CCWGG	3 cut(s)	312, 329, 511
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AloI	GAACNNNNNNTCC	2 cut(s)	525, 557
AluBI	AGCT	2 cut(s)	98, 237
AluI	AGCT	2 cut(s)	98, 237
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	1 cut(s)	515
AoxI	GGCC	2 cut(s)	327, 567
AspS9I	GGNCC	4 cut(s)	101, 183, 201, 567
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	3 cut(s)	25, 97, 418
AvaII	GGWCC	3 cut(s)	101, 183, 201
BalI	TGGCCA	1 cut(s)	329
BarI	GAAGNNNNNNTAC	2 cut(s)	188, 220
BbsI	GAAGAC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	655
BccI	CCATC	3 cut(s)	270, 511, 613
BceAI	ACGGC	1 cut(s)	554
BciT130I	CCWGG	3 cut(s)	314, 331, 513
BclI	TGATCA	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	241
Bme1390I	CCNGG	4 cut(s)	314, 331, 430, 513
Bme18I	GGWCC	3 cut(s)	101, 183, 201
BmgBI	CACGTC	2 cut(s)	364, 660
BmgT120I	GGNCC	4 cut(s)	101, 183, 201, 567
BmiI	GGNNCC	3 cut(s)	184, 185, 568
BmrFI	CCNGG	4 cut(s)	314, 331, 430, 513
BmsI	GCATC	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	430
BsaAI	YACGTR	1 cut(s)	325
BsaBI	GATNNNNATC	2 cut(s)	20, 623
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
Bse1I	ACTGG	2 cut(s)	478, 549
Bse3DI	GCAATG	2 cut(s)	111, 364
Bse8I	GATNNNNATC	2 cut(s)	20, 623
BseBI	CCWGG	3 cut(s)	314, 331, 513
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	4 cut(s)	37, 262, 522, 624
BseJI	GATNNNNATC	2 cut(s)	20, 623
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseMI	GCAATG	2 cut(s)	111, 364
BseNI	ACTGG	2 cut(s)	478, 549
BseRI	GAGGAG	2 cut(s)	23, 383
BseYI	CCCAGC	1 cut(s)	500
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	329, 569
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	655
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	4 cut(s)	169, 244, 445, 646
BslI	CCNNNNNNNGG	1 cut(s)	429
BsmAI	GTCTC	1 cut(s)	515
BsmFI	GGGAC	4 cut(s)	169, 244, 445, 646
BsnI	GGCC	2 cut(s)	329, 569
Bso31I	GGTCTC	1 cut(s)	515
Bsp1286I	GDGCHC	1 cut(s)	655
Bsp143I	GATC	3 cut(s)	21, 444, 634
BspACI	CCGC	4 cut(s)	5, 123, 199, 423
BspANI	GGCC	2 cut(s)	329, 569
BspLI	GGNNCC	3 cut(s)	184, 185, 568
BspMAI	CTGCAG	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	515
BsrDI	GCAATG	2 cut(s)	111, 364
BsrI	ACTGG	2 cut(s)	478, 549
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	3 cut(s)	21, 444, 634
Bst2UI	CCWGG	3 cut(s)	314, 331, 513
Bst4CI	ACNGT	4 cut(s)	176, 212, 412, 436
Bst6I	CTCTTC	1 cut(s)	381
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	488
BstF5I	GGATG	4 cut(s)	37, 262, 522, 624
BstKTI	GATC	3 cut(s)	24, 447, 637
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	3 cut(s)	21, 444, 634
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	3 cut(s)	314, 331, 513
BstSCI	CCNGG	4 cut(s)	312, 329, 428, 511
BstSFI	CTRYAG	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	329, 569
BtrI	CACGTC	2 cut(s)	364, 660
BtsCI	GGATG	4 cut(s)	37, 262, 522, 624
BtsIMutI	CAGTG	2 cut(s)	417, 556
Cac8I	GCNNGC	1 cut(s)	488
Cfr13I	GGNCC	4 cut(s)	101, 183, 201, 567
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	2 cut(s)	25, 286
CviJI	RGCY	8 cut(s)	98, 237, 329, 374, 486, 490, 569, 603
CviKI_1	RGCY	8 cut(s)	98, 237, 329, 374, 486, 490, 569, 603
CviQI	GTAC	1 cut(s)	322
DpnI	GATC	3 cut(s)	23, 446, 636
DpnII	GATC	3 cut(s)	21, 444, 634
DraI	TTTAAA	1 cut(s)	577
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
EciI	GGCGGA	2 cut(s)	20, 112
Eco31I	GGTCTC	1 cut(s)	515
Eco47I	GGWCC	3 cut(s)	101, 183, 201
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRII	CCWGG	3 cut(s)	312, 329, 511
FaeI	CATG	2 cut(s)	28, 289
FaiI	YATR	4 cut(s)	26, 287, 441, 558
FaqI	GGGAC	4 cut(s)	169, 244, 445, 646
FatI	CATG	2 cut(s)	24, 285
FbaI	TGATCA	1 cut(s)	21
FokI	GGATG	4 cut(s)	44, 249, 529, 631
GsaI	CCCAGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	329, 569
HapII	CCGG	1 cut(s)	429
Hin1II	CATG	2 cut(s)	28, 289
HinfI	GANTC	2 cut(s)	16, 217
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	3 cut(s)	25, 97, 418
Hpy166II	GTNNAC	2 cut(s)	343, 379
Hpy188I	TCNGA	4 cut(s)	21, 216, 272, 454
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	2 cut(s)	343, 379
HpyAV	CCTTC	5 cut(s)	114, 160, 277, 386, 535
HpyCH4III	ACNGT	4 cut(s)	176, 212, 412, 436
HpyCH4IV	ACGT	4 cut(s)	324, 339, 363, 659
HpyCH4V	TGCA	4 cut(s)	243, 357, 470, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpySE526I	ACGT	4 cut(s)	324, 339, 363, 659
Hsp92II	CATG	2 cut(s)	28, 289
KflI	GGGWCCC	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	21, 444, 634
LmnI	GCTCC	2 cut(s)	95, 650
LweI	GCATC	1 cut(s)	458
MaeII	ACGT	4 cut(s)	324, 339, 363, 659
MaeIII	GTNAC	3 cut(s)	308, 406, 551
MalI	GATC	3 cut(s)	23, 446, 636
MboI	GATC	3 cut(s)	21, 444, 634
MboII	GAAGA	4 cut(s)	182, 205, 212, 398
MhlI	GDGCHC	1 cut(s)	655
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	3 cut(s)	133, 597, 610
MluNI	TGGCCA	1 cut(s)	329
Mox20I	TGGCCA	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	1 cut(s)	576
MslI	CAYNNNNRTG	2 cut(s)	284, 549
Msp20I	TGGCCA	1 cut(s)	329
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	4 cut(s)	314, 331, 430, 513
MvaI	CCWGG	3 cut(s)	314, 331, 513
MwoI	GCNNNNNNNGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	430
NdeII	GATC	3 cut(s)	21, 444, 634
NlaIII	CATG	2 cut(s)	28, 289
NlaIV	GGNNCC	3 cut(s)	184, 185, 568
NmuCI	GTSAC	2 cut(s)	406, 551
PfeI	GAWTC	2 cut(s)	16, 217
PfoI	TCCNGGA	1 cut(s)	428
Ppu21I	YACGTR	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	183
Psp6I	CCWGG	3 cut(s)	312, 329, 511
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	3 cut(s)	312, 329, 511
PspN4I	GGNNCC	3 cut(s)	184, 185, 568
PspPI	GGNCC	4 cut(s)	101, 183, 201, 567
PspPPI	RGGWCCY	1 cut(s)	183
PsrI	GAACNNNNNNTAC	2 cut(s)	335, 367
PstI	CTGCAG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	2 cut(s)	284, 549
SaqAI	TTAA	1 cut(s)	576
Sau3AI	GATC	3 cut(s)	21, 444, 634
Sau96I	GGNCC	4 cut(s)	101, 183, 201, 567
ScrFI	CCNGG	4 cut(s)	314, 331, 430, 513
SduI	GDGCHC	1 cut(s)	655
SfaNI	GCATC	1 cut(s)	458
SfcI	CTRYAG	1 cut(s)	241
SinI	GGWCC	3 cut(s)	101, 183, 201
SmiMI	CAYNNNNRTG	2 cut(s)	284, 549
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	133, 597, 610
SsiI	CCGC	4 cut(s)	5, 123, 199, 423
SspI	AATATT	1 cut(s)	70
StyD4I	CCNGG	4 cut(s)	312, 329, 428, 511
TaaI	ACNGT	4 cut(s)	176, 212, 412, 436
TaiI	ACGT	4 cut(s)	327, 342, 366, 662
TaqI	TCGA	1 cut(s)	290
TasI	AATT	3 cut(s)	133, 597, 610
TfiI	GAWTC	2 cut(s)	16, 217
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	2 cut(s)	417, 556
TseFI	GTSAC	2 cut(s)	406, 551
Tsp45I	GTSAC	2 cut(s)	406, 551
TspDTI	ATGAA	5 cut(s)	274, 292, 399, 533, 597
TspRI	CASTG	2 cut(s)	417, 556
VpaK11BI	GGWCC	3 cut(s)	101, 183, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.