FvH4_4g17980

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009002
Physical Location & Seq
Forward (+)
21946686 .. 21949153
2468 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17980.t1

Sequence Viewer

Length: 1194 bp
ATGGAGAACAATGTGTTTGGGAATTACTTGGTGGTCATAGTAGGGGCCGGCCCCTCCGGCATTGCAACCTCAGCTTTGCTCAACTCCATGTCGATTCCAAACATTGTCTTTGAAAGGGAGGATTGTTGTGCTTCCCTGTGGAAGAAACGATCCTATGATCGCTTGTGTCTCCATTTAGCTAAGAACTTCTGCTCTCTGCCGATGATGCCGCATTCGTTCAGAACTGCAACATTCATGTCCAAAGACAAGTTCGCAGACTATGTGGACAAGTACGTGACTCGTTTCAACGTCAACCCGCGTTACTGTCACAATGTCGAATCGGCACTGTACGAAGAAGCTAATCAGAAATGGAAGATCGAGGTGAAGAACACTGAGGTAACAGATGGTGTGGGTTCCCTCCAAGTGTATTACGCAGATTTCTTGGTAATTGCGACTGGAGAAAACAGTCGACCTGTTACCCCAGAGTTGCCTGGAATAGAGACCTTTAAAGGAAATGTTATGCATGCACAAGATTATAAGTGTGGAGCTAGTTTTAAGGATCAGAATGTGTTAGTTGTTGGTTGTGGCAATTCTGGCATGGAGATCAGTAATGATCTTGCAGAGAGTGGAGCTCATGCATCGATTGTCGTCAGAAGCCAAGTTCATGTGCTGAGCAGAGAACTTGTTCGGCTTGGGATGGTACTGTTGGATTATCTCCCAATGAATATTGTTGACAGGTTTATTCTATATCTTGCCAAGTTCAGCTATGGTGACTTGCCCAGCTATGGCATTTCTCCACCAGTTGAAGGGCCTTTTTTCTTCAAAGCACTTACCGGAAAGACTCCTGTAATTGATCGTGGAACTGTGAAAAAAATTCGCTCCGGAAAGATTAAGGTTTTCTCCGGAGTAGAGACAATACGGCACAATATTGTGGAATTCAAGAATGGTTCTATACAGCGTGTTGATGCCATTGTCATGGCCACTGGTTATCGAAGCGTAGCACACAAATGGCTCAAGGATTATAAGGTCATTCTGGATGAGAATGACAAACCCAAGAACAAATATCCAGGGCATTGGAAAGGTGAAAAGGGCGTCTACTGTGTTGGCTTCTCAGGGAAGGGAATTCCGGGGATTTCGTTTGATTCTAGGGCTGTTGCTAATGACATTCATCAAATTTTGCTTGTAAAGACTGGTAATGCTGCAAGAGAGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

398

Amino Acids

44.15

Weight (kDa)

8.9

Isoelectric Point (pI)

29.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 11 - 335 6.8e-22 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 11 - 213 8.3e-14 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 12 - 213 2.1e-20 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 73 - 210 6.9e-12 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 516, 1002
AccI GTMKAC 2 cut(s) 448, 1074
AccII CGCG 1 cut(s) 298
AccIII TCCGGA 2 cut(s) 860, 881
AciI CCGC 2 cut(s) 209, 296
AclWI GGATC 2 cut(s) 144, 546
AcoI YGGCCR 1 cut(s) 957
AcsI RAATTY 4 cut(s) 852, 914, 1101, 1152
AcyI GRCGYC 1 cut(s) 1071
AfaI GTAC 3 cut(s) 272, 329, 681
AfiI CCNNNNNNNGG 2 cut(s) 764, 785
AgsI TTSAA 5 cut(s) 113, 286, 785, 802, 919
AjnI CCWGG 2 cut(s) 469, 1045
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 7 cut(s) 74, 179, 338, 527, 611, 744, 762
AluI AGCT 7 cut(s) 74, 179, 338, 527, 611, 744, 762
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 3 cut(s) 173, 473, 884
AlwI GGATC 2 cut(s) 144, 546
Aor13HI TCCGGA 2 cut(s) 860, 881
AoxI GGCC 4 cut(s) 45, 49, 788, 957
ApeKI GCWGC 1 cut(s) 1178
ApoI RAATTY 4 cut(s) 852, 914, 1101, 1152
Asp700I GAANNNNTTC 1 cut(s) 663
AspS9I GGNCC 3 cut(s) 45, 50, 788
AsuC2I CCSGG 1 cut(s) 1107
AsuHPI GGTGA 3 cut(s) 373, 761, 1073
BalI TGGCCA 1 cut(s) 959
BanII GRGCYC 1 cut(s) 613
Bbv12I GWGCWC 1 cut(s) 613
BbvCI CCTCAGC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 1165
BccI CCATC 2 cut(s) 377, 670
BceAI ACGGC 1 cut(s) 914
BciT130I CCWGG 2 cut(s) 471, 1047
BcnI CCSGG 1 cut(s) 1107
BcoDI GTCTC 3 cut(s) 173, 473, 884
BfaI CTAG 3 cut(s) 528, 1125, 1192
BglI GCCNNNNNGGC 1 cut(s) 57
BisI GCNGC 2 cut(s) 209, 1179
BlpI GCTNAGC 1 cut(s) 650
BlsI GCNGC 2 cut(s) 210, 1180
Bme1390I CCNGG 3 cut(s) 471, 1047, 1107
BmgT120I GGNCC 3 cut(s) 45, 50, 788
BmiI GGNNCC 3 cut(s) 46, 52, 394
BmrFI CCNGG 3 cut(s) 471, 1047, 1107
BmsI GCATC 3 cut(s) 195, 626, 934
BplI GAGNNNNNCTC 2 cut(s) 595, 627
BpmI CTGGAG 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 70
Bpu1102I GCTNAGC 1 cut(s) 650
BpuEI CTTGAG 1 cut(s) 977
BpuMI CCSGG 1 cut(s) 1107
Bsa29I ATCGAT 1 cut(s) 620
BsaAI YACGTR 1 cut(s) 274
BsaHI GRCGYC 1 cut(s) 1071
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 2 cut(s) 1046, 1106
BsaWI WCCGGW 3 cut(s) 812, 860, 881
Bsc4I CCNNNNNNNGG 2 cut(s) 764, 785
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 4 cut(s) 439, 779, 967, 1174
Bse3DI GCAATG 1 cut(s) 60
BseAI TCCGGA 2 cut(s) 860, 881
BseBI CCWGG 2 cut(s) 471, 1047
BseCI ATCGAT 1 cut(s) 620
BseDI CCNNGG 2 cut(s) 1046, 1106
BseGI GGATG 2 cut(s) 681, 1021
BseLI CCNNNNNNNGG 2 cut(s) 764, 785
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 4 cut(s) 84, 363, 641, 1104
BseNI ACTGG 4 cut(s) 439, 779, 967, 1174
BseXI GCAGC 1 cut(s) 1165
BseYI CCCAGC 1 cut(s) 758
Bsh1236I CGCG 1 cut(s) 298
BshFI GGCC 4 cut(s) 47, 51, 790, 959
BshVI ATCGAT 1 cut(s) 620
BsiHKAI GWGCWC 1 cut(s) 613
BsiSI CCGG 6 cut(s) 48, 57, 813, 861, 882, 1106
BslI CCNNNNNNNGG 2 cut(s) 764, 785
BsmAI GTCTC 3 cut(s) 173, 473, 884
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 4 cut(s) 47, 51, 790, 959
Bso31I GGTCTC 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 613
Bsp13I TCCGGA 2 cut(s) 860, 881
Bsp143I GATC 7 cut(s) 149, 157, 354, 538, 582, 592, 832
Bsp1720I GCTNAGC 1 cut(s) 650
BspACI CCGC 2 cut(s) 209, 296
BspANI GGCC 4 cut(s) 47, 51, 790, 959
BspCNI CTCAG 4 cut(s) 83, 364, 642, 1103
BspDI ATCGAT 1 cut(s) 620
BspEI TCCGGA 2 cut(s) 860, 881
BspFNI CGCG 1 cut(s) 298
BspLI GGNNCC 3 cut(s) 46, 52, 394
BspPI GGATC 2 cut(s) 144, 546
BspTNI GGTCTC 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 4 cut(s) 439, 779, 967, 1174
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 1046, 1106
BssMI GATC 7 cut(s) 149, 157, 354, 538, 582, 592, 832
BssNI GRCGYC 1 cut(s) 1071
Bst2UI CCWGG 2 cut(s) 471, 1047
Bst4CI ACNGT 6 cut(s) 305, 327, 446, 684, 844, 1079
BstACI GRCGYC 1 cut(s) 1071
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 2 cut(s) 49, 504
BstDEI CTNAG 5 cut(s) 70, 180, 372, 650, 1090
BstF5I GGATG 2 cut(s) 681, 1021
BstFNI CGCG 1 cut(s) 298
BstKTI GATC 7 cut(s) 152, 160, 357, 541, 585, 595, 835
BstMAI GTCTC 3 cut(s) 173, 473, 884
BstMBI GATC 7 cut(s) 149, 157, 354, 538, 582, 592, 832
BstMWI GCNNNNNNNGC 4 cut(s) 57, 71, 205, 573
BstNI CCWGG 2 cut(s) 471, 1047
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 3 cut(s) 469, 1045, 1105
BstUI CGCG 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 1165
BstXI CCANNNNNNTGG 2 cut(s) 955, 1053
Bsu15I ATCGAT 1 cut(s) 620
BsuRI GGCC 4 cut(s) 47, 51, 790, 959
BsuTUI ATCGAT 1 cut(s) 620
BtsCI GGATG 2 cut(s) 681, 1021
BtsIMutI CAGTG 3 cut(s) 323, 369, 960
Cac8I GCNNGC 2 cut(s) 49, 504
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 3 cut(s) 45, 50, 788
ClaI ATCGAT 1 cut(s) 620
CseI GACGC 1 cut(s) 1060
Csp6I GTAC 3 cut(s) 271, 328, 680
CviAII CATG 7 cut(s) 88, 235, 503, 577, 614, 644, 955
CviQI GTAC 3 cut(s) 271, 328, 680
DdeI CTNAG 5 cut(s) 70, 180, 372, 650, 1090
DpnI GATC 7 cut(s) 151, 159, 356, 540, 584, 594, 834
DpnII GATC 7 cut(s) 149, 157, 354, 538, 582, 592, 832
DraI TTTAAA 1 cut(s) 487
EaeI YGGCCR 1 cut(s) 957
Ecl136II GAGCTC 1 cut(s) 611
Eco24I GRGCYC 1 cut(s) 613
Eco31I GGTCTC 1 cut(s) 473
Eco53kI GAGCTC 1 cut(s) 611
EcoICRI GAGCTC 1 cut(s) 611
EcoO109I RGGNCCY 1 cut(s) 788
EcoRI GAATTC 2 cut(s) 914, 1101
EcoRII CCWGG 2 cut(s) 469, 1045
EcoT22I ATGCAT 2 cut(s) 504, 619
EcoT38I GRGCYC 1 cut(s) 613
FaeI CATG 7 cut(s) 91, 238, 506, 580, 617, 647, 958
FatI CATG 7 cut(s) 87, 234, 502, 576, 613, 643, 954
FauI CCCGC 1 cut(s) 303
FblI GTMKAC 2 cut(s) 448, 1074
Fnu4HI GCNGC 2 cut(s) 209, 1179
FokI GGATG 2 cut(s) 688, 1028
FriOI GRGCYC 1 cut(s) 613
FseI GGCCGGCC 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 209, 1179
FspBI CTAG 3 cut(s) 528, 1125, 1192
GluI GCNGC 2 cut(s) 209, 1179
GsaI CCCAGC 1 cut(s) 762
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 4 cut(s) 47, 51, 790, 959
HapII CCGG 6 cut(s) 48, 57, 813, 861, 882, 1106
HgaI GACGC 1 cut(s) 1060
Hin1I GRCGYC 1 cut(s) 1071
Hin1II CATG 7 cut(s) 91, 238, 506, 580, 617, 647, 958
HincII GTYRAC 3 cut(s) 292, 449, 712
HindII GTYRAC 3 cut(s) 292, 449, 712
HinfI GANTC 5 cut(s) 94, 277, 317, 820, 1121
HpaII CCGG 6 cut(s) 48, 57, 813, 861, 882, 1106
HphI GGTGA 3 cut(s) 373, 761, 1073
Hpy166II GTNNAC 5 cut(s) 265, 292, 449, 712, 1075
Hpy188I TCNGA 4 cut(s) 221, 345, 543, 632
Hpy188III TCNNGA 4 cut(s) 861, 882, 919, 1013
Hpy8I GTNNAC 5 cut(s) 265, 292, 449, 712, 1075
HpyAV CCTTC 2 cut(s) 779, 1090
HpyCH4III ACNGT 6 cut(s) 305, 327, 446, 684, 844, 1079
HpyCH4IV ACGT 2 cut(s) 273, 288
HpyCH4V TGCA 7 cut(s) 65, 227, 502, 506, 599, 617, 1181
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 71, 205, 573
HpyF3I CTNAG 5 cut(s) 70, 180, 372, 650, 1090
HpySE526I ACGT 2 cut(s) 273, 288
Hsp92I GRCGYC 1 cut(s) 1071
Hsp92II CATG 7 cut(s) 91, 238, 506, 580, 617, 647, 958
Kpn2I TCCGGA 2 cut(s) 860, 881
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Kzo9I GATC 7 cut(s) 149, 157, 354, 538, 582, 592, 832
LmnI GCTCC 3 cut(s) 524, 608, 863
Lsp1109I GCAGC 1 cut(s) 1165
LweI GCATC 3 cut(s) 195, 626, 934
MaeI CTAG 3 cut(s) 528, 1125, 1192
MaeII ACGT 2 cut(s) 273, 288
MaeIII GTNAC 6 cut(s) 274, 299, 305, 376, 454, 749
MalI GATC 7 cut(s) 151, 159, 356, 540, 584, 594, 834
MboI GATC 7 cut(s) 149, 157, 354, 538, 582, 592, 832
MboII GAAGA 5 cut(s) 154, 344, 364, 376, 790
MhlI GDGCHC 1 cut(s) 613
MlsI TGGCCA 1 cut(s) 959
MluCI AATT 8 cut(s) 22, 426, 568, 828, 852, 914, 1101, 1152
MluNI TGGCCA 1 cut(s) 959
MlyI GAGTC 2 cut(s) 271, 814
MmeI TCCRAC 1 cut(s) 666
MnlI CCTC 7 cut(s) 64, 79, 112, 352, 367, 407, 1180
Mox20I TGGCCA 1 cut(s) 959
Mph1103I ATGCAT 2 cut(s) 504, 619
MroI TCCGGA 2 cut(s) 860, 881
MroNI GCCGGC 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 663
MscI TGGCCA 1 cut(s) 959
MseI TTAA 3 cut(s) 486, 534, 870
MslI CAYNNNNRTG 2 cut(s) 953, 985
Msp20I TGGCCA 1 cut(s) 959
MspI CCGG 6 cut(s) 48, 57, 813, 861, 882, 1106
MspR9I CCNGG 3 cut(s) 471, 1047, 1107
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 2 cut(s) 471, 1047
MvnI CGCG 1 cut(s) 298
MwoI GCNNNNNNNGC 4 cut(s) 57, 71, 205, 573
NaeI GCCGGC 1 cut(s) 49
NciI CCSGG 1 cut(s) 1107
NdeII GATC 7 cut(s) 149, 157, 354, 538, 582, 592, 832
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 7 cut(s) 91, 238, 506, 580, 617, 647, 958
NlaIV GGNNCC 3 cut(s) 46, 52, 394
NmuCI GTSAC 3 cut(s) 274, 305, 749
NsiI ATGCAT 2 cut(s) 504, 619
NspI RCATGY 1 cut(s) 506
PaeI GCATGC 1 cut(s) 506
PctI GAATGC 1 cut(s) 211
PdiI GCCGGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 3 cut(s) 94, 317, 1121
PkrI GCNGC 2 cut(s) 210, 1180
PleI GAGTC 2 cut(s) 271, 814
PpsI GAGTC 2 cut(s) 271, 814
Ppu21I YACGTR 1 cut(s) 274
PsiI TTATAA 2 cut(s) 516, 1002
Psp124BI GAGCTC 1 cut(s) 613
Psp6I CCWGG 2 cut(s) 469, 1045
PspFI CCCAGC 1 cut(s) 758
PspGI CCWGG 2 cut(s) 469, 1045
PspN4I GGNNCC 3 cut(s) 46, 52, 394
PspPI GGNCC 3 cut(s) 45, 50, 788
RigI GGCCGGCC 1 cut(s) 51
RsaI GTAC 3 cut(s) 272, 329, 681
RsaNI GTAC 3 cut(s) 271, 328, 680
RseI CAYNNNNRTG 2 cut(s) 953, 985
SacI GAGCTC 1 cut(s) 613
SalI GTCGAC 1 cut(s) 447
SaqAI TTAA 3 cut(s) 486, 534, 870
SatI GCNGC 2 cut(s) 209, 1179
Sau3AI GATC 7 cut(s) 149, 157, 354, 538, 582, 592, 832
Sau96I GGNCC 3 cut(s) 45, 50, 788
SchI GAGTC 2 cut(s) 271, 814
ScrFI CCNGG 3 cut(s) 471, 1047, 1107
SduI GDGCHC 1 cut(s) 613
SfaNI GCATC 3 cut(s) 195, 626, 934
SmiMI CAYNNNNRTG 2 cut(s) 953, 985
SmlI CTYRAG 1 cut(s) 992
SmoI CTYRAG 1 cut(s) 992
SphI GCATGC 1 cut(s) 506
Sse9I AATT 8 cut(s) 22, 426, 568, 828, 852, 914, 1101, 1152
SsiI CCGC 2 cut(s) 209, 296
SspI AATATT 2 cut(s) 706, 907
SspMI CTAG 3 cut(s) 528, 1125, 1192
SstI GAGCTC 1 cut(s) 613
StyD4I CCNGG 3 cut(s) 469, 1045, 1105
TaaI ACNGT 6 cut(s) 305, 327, 446, 684, 844, 1079
TaiI ACGT 2 cut(s) 276, 291
TaqI TCGA 6 cut(s) 92, 315, 357, 448, 620, 970
TasI AATT 8 cut(s) 22, 426, 568, 828, 852, 914, 1101, 1152
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 3 cut(s) 94, 317, 1121
Tru1I TTAA 3 cut(s) 486, 534, 870
Tru9I TTAA 3 cut(s) 486, 534, 870
TscAI CASTG 3 cut(s) 330, 376, 967
TseFI GTSAC 3 cut(s) 274, 305, 749
TseI GCWGC 1 cut(s) 1178
Tsp45I GTSAC 3 cut(s) 274, 305, 749
TspDTI ATGAA 4 cut(s) 223, 632, 716, 1136
TspRI CASTG 3 cut(s) 330, 376, 967
XapI RAATTY 4 cut(s) 852, 914, 1101, 1152
XceI RCATGY 1 cut(s) 506
XmiI GTMKAC 2 cut(s) 448, 1074
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 3 cut(s) 528, 1125, 1192
Zsp2I ATGCAT 2 cut(s) 504, 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.