Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004902.1

Orthogroup ID

OG0009002

Physical Location & Seq

Genomic Coordinates Reverse (-)

5327 .. 7387

Gene Structure 2061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004902.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atggagaacaatgtgtttgagaatgcttcggtggtgatagtaggcgccggcccgtcaggcattgcaacctcagcgctgctcaactccatgttggtgccaaacctcgtcttcgagagggaagattgttgtgcttccctctggaagaaacggtcctacgaccgtttgagtcttcatttggcgaaaaacttttgctctctgcctctcatgccgcacccattaagcactgcaactttcatgtccaaagacacgttcataagctatatggacgagtacgtttcccgtttcaacgtcaacccccattactgtcacaatgttgagtcggctttttacgaagaagctgataaaaaatggaaggttgaagtgaagaacactagggtggctgataaggaggtttgcccccaagtgtactatgcggatttcttagtggtggccaccggagaaaatagccaggcaattatcccagagttgcctggactggagacctttaatggaaaggttattcatgcgagtgattataaatgcggagcgagttttagagataagagtgtgttggtcattggttgtggcaattctggcatggagattagtaatgatctctcagaaaatggagctcatgcatccattgttgttagaagccaacttcatgtacttagcagagaaattgtacgaattgggatgatactgttgaatttcctcccggtgaatatggtagacaggttcgtttcatttcttgccatgtttagctacagtgatctgcccagctatgggattcatcaaccagctgaaggcccttttttctacaaaacacttactggaaagactccggttttcccaggaatagagaagatacacaacaatattgtggaattcaaaaatggtgccctccagcgtttcgatgccattgtgttggcaactggttatcgaagcgttgcgcacaactggctcaaggatgacaagccaaagaacaagtatccaaaccactggaaaggagaaaagggcgtctactgtgttggattcacagggaggggaattctagggatttcgtcggattctaaggctgttgctgaagatatctatcagcttttaaaggcacagaaacccacttatgctgcaagaatggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

374

Amino Acids

41.69

Weight (kDa)

7.6

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48910
fragaria_vesca	FvH4_4g17980
malus_domestica	MD15G1133800.v1.1
prunus_persica	Prupe.6G157400_v2.0.a1 Prupe.6G157500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422151 RchiOBHm_Chr4g0422171
rosa_laevigata	RLG00000007629 RLG00000007630
rosa_multiflora	Rmu_co8426579.1_g000001 Rmu_sc0004902.1_g000002 Rmu_sc0009286.1_g000009
rosa_roxburghii	Rroxscaffold_5G00364300
rosa_rugosa	Rorug04G0177600 Rorug04G0177700
rosa_samantha	Rh4AG237300 Rh4AG237400 Rh4BG240100 Rh4BG240400 Rh4CG252000 Rh4CG252300
rosa_wichuraiana	Rw4G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
Acc16I	TGCGCA	1 cut(s)	933
AccB1I	GGYRCC	3 cut(s)	44, 94, 878
AccI	GTMKAC	2 cut(s)	711, 1002
AciI	CCGC	3 cut(s)	209, 413, 522
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	3 cut(s)	688, 866, 1029
AcuI	CTGAAG	2 cut(s)	804, 1086
AcyI	GRCGYC	2 cut(s)	45, 999
AfaI	GTAC	4 cut(s)	272, 407, 648, 666
AfeI	AGCGCT	1 cut(s)	75
AfiI	CCNNNNNNNGG	3 cut(s)	764, 765, 785
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	4 cut(s)	286, 359, 688, 871
AjnI	CCWGG	3 cut(s)	447, 469, 832
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AleI	CACNNNNGTG	1 cut(s)	374
AluBI	AGCT	7 cut(s)	258, 338, 611, 744, 762, 782, 1081
AluI	AGCT	7 cut(s)	258, 338, 611, 744, 762, 782, 1081
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	1 cut(s)	473
Aor51HI	AGCGCT	1 cut(s)	75
AoxI	GGCC	3 cut(s)	49, 429, 787
ApeKI	GCWGC	2 cut(s)	76, 1109
ApoI	RAATTY	3 cut(s)	688, 866, 1029
AspLEI	GCGC	3 cut(s)	47, 76, 934
AspS9I	GGNCC	3 cut(s)	50, 150, 788
AsuC2I	CCSGG	1 cut(s)	698
AsuHPI	GGTGA	2 cut(s)	46, 712
AvaII	GGWCC	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	883
BalI	TGGCCA	1 cut(s)	431
BanI	GGYRCC	3 cut(s)	44, 94, 878
BanII	GRGCYC	1 cut(s)	613
BbsI	GAAGAC	2 cut(s)	100, 161
Bbv12I	GWGCWC	1 cut(s)	613
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	63, 1096
BciT130I	CCWGG	3 cut(s)	449, 471, 834
BciVI	GTATCC	1 cut(s)	981
BcnI	CCSGG	1 cut(s)	698
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	2 cut(s)	372, 1034
BfmI	CTRYAG	1 cut(s)	745
BfoI	RGCGCY	2 cut(s)	48, 77
BfuI	GTATCC	1 cut(s)	981
BglI	GCCNNNNNGGC	1 cut(s)	57
BisI	GCNGC	3 cut(s)	77, 209, 1110
BlsI	GCNGC	3 cut(s)	78, 210, 1111
Bme1390I	CCNGG	4 cut(s)	449, 471, 698, 834
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	3 cut(s)	50, 150, 788
BmiI	GGNNCC	3 cut(s)	46, 96, 880
BmrFI	CCNGG	4 cut(s)	449, 471, 698, 834
BmsI	GCATC	2 cut(s)	626, 886
BpiI	GAAGAC	2 cut(s)	100, 161
BpmI	CTGGAG	2 cut(s)	497, 869
Bpu10I	CCTNAGC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	929
BpuMI	CCSGG	1 cut(s)	698
BsaBI	GATNNNNATC	1 cut(s)	1074
BsaHI	GRCGYC	2 cut(s)	45, 999
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	832
BsaWI	WCCGGW	2 cut(s)	434, 823
Bsc4I	CCNNNNNNNGG	3 cut(s)	764, 765, 785
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	5 cut(s)	480, 817, 919, 944, 986
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	1074
BseBI	CCWGG	3 cut(s)	449, 471, 834
BseDI	CCNNGG	1 cut(s)	832
BseGI	GGATG	3 cut(s)	617, 681, 955
BseJI	GATNNNNATC	1 cut(s)	1074
BseLI	CCNNNNNNNGG	3 cut(s)	764, 765, 785
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	84, 612
BseNI	ACTGG	5 cut(s)	480, 817, 919, 944, 986
BseSI	GKGCMC	1 cut(s)	883
BseXI	GCAGC	2 cut(s)	63, 1096
BseYI	CCCAGC	1 cut(s)	758
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	51, 431, 789
BshNI	GGYRCC	3 cut(s)	44, 94, 878
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	613
BsiSI	CCGG	4 cut(s)	48, 435, 698, 824
BslI	CCNNNNNNNGG	3 cut(s)	764, 765, 785
BsmAI	GTCTC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	51, 431, 789
Bso31I	GGTCTC	1 cut(s)	473
Bsp1286I	GDGCHC	2 cut(s)	613, 883
Bsp143I	GATC	2 cut(s)	592, 751
BspACI	CCGC	3 cut(s)	209, 413, 522
BspANI	GGCC	3 cut(s)	51, 431, 789
BspCNI	CTCAG	2 cut(s)	83, 611
BspLI	GGNNCC	3 cut(s)	46, 96, 880
BspT107I	GGYRCC	3 cut(s)	44, 94, 878
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	5 cut(s)	480, 817, 919, 944, 986
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	832
BssMI	GATC	2 cut(s)	592, 751
BssNI	GRCGYC	2 cut(s)	45, 999
Bst2UI	CCWGG	3 cut(s)	449, 471, 834
Bst4CI	ACNGT	6 cut(s)	150, 161, 305, 684, 749, 1007
BstACI	GRCGYC	2 cut(s)	45, 999
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	5 cut(s)	70, 421, 598, 650, 1053
BstF5I	GGATG	3 cut(s)	617, 681, 955
BstH2I	RGCGCY	2 cut(s)	48, 77
BstHHI	GCGC	3 cut(s)	47, 76, 934
BstKTI	GATC	2 cut(s)	595, 754
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	2 cut(s)	592, 751
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 71, 205, 573, 940
BstNI	CCWGG	3 cut(s)	449, 471, 834
BstSCI	CCNGG	4 cut(s)	447, 469, 696, 832
BstSFI	CTRYAG	1 cut(s)	745
BstSLI	GKGCMC	1 cut(s)	883
BstV1I	GCAGC	2 cut(s)	63, 1096
BstV2I	GAAGAC	2 cut(s)	100, 161
BstXI	CCANNNNNNTGG	2 cut(s)	907, 981
BsuI	GTATCC	1 cut(s)	981
BsuRI	GGCC	3 cut(s)	51, 431, 789
BtsCI	GGATG	3 cut(s)	617, 681, 955
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	3 cut(s)	222, 754, 979
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	3 cut(s)	47, 76, 934
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	3 cut(s)	50, 150, 788
CseI	GACGC	1 cut(s)	988
Csp6I	GTAC	4 cut(s)	271, 406, 647, 665
CviAII	CATG	8 cut(s)	88, 205, 235, 503, 577, 614, 644, 736
CviQI	GTAC	4 cut(s)	271, 406, 647, 665
DdeI	CTNAG	5 cut(s)	70, 421, 598, 650, 1053
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	2 cut(s)	594, 753
DpnII	GATC	2 cut(s)	592, 751
DraI	TTTAAA	1 cut(s)	1086
EaeI	YGGCCR	1 cut(s)	429
Ecl136II	GAGCTC	1 cut(s)	611
Eco24I	GRGCYC	1 cut(s)	613
Eco31I	GGTCTC	1 cut(s)	473
Eco32I	GATATC	1 cut(s)	1072
Eco47I	GGWCC	1 cut(s)	150
Eco47III	AGCGCT	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	611
Eco57I	CTGAAG	2 cut(s)	804, 1086
EcoICRI	GAGCTC	1 cut(s)	611
EcoO109I	RGGNCCY	1 cut(s)	788
EcoRI	GAATTC	2 cut(s)	866, 1029
EcoRII	CCWGG	3 cut(s)	447, 469, 832
EcoRV	GATATC	1 cut(s)	1072
EcoT22I	ATGCAT	1 cut(s)	619
EcoT38I	GRGCYC	1 cut(s)	613
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
FaeI	CATG	8 cut(s)	91, 208, 238, 506, 580, 617, 647, 739
FatI	CATG	8 cut(s)	87, 204, 234, 502, 576, 613, 643, 735
FblI	GTMKAC	2 cut(s)	711, 1002
Fnu4HI	GCNGC	3 cut(s)	77, 209, 1110
FokI	GGATG	3 cut(s)	604, 688, 962
FriOI	GRGCYC	1 cut(s)	613
Fsp4HI	GCNGC	3 cut(s)	77, 209, 1110
FspBI	CTAG	2 cut(s)	372, 1034
FspI	TGCGCA	1 cut(s)	933
GlaI	GCGC	3 cut(s)	46, 75, 933
GluI	GCNGC	3 cut(s)	77, 209, 1110
GsaI	CCCAGC	1 cut(s)	762
GsuI	CTGGAG	2 cut(s)	497, 869
HaeII	RGCGCY	2 cut(s)	48, 77
HaeIII	GGCC	3 cut(s)	51, 431, 789
HapII	CCGG	4 cut(s)	48, 435, 698, 824
HgaI	GACGC	1 cut(s)	988
HhaI	GCGC	3 cut(s)	47, 76, 934
Hin1I	GRCGYC	2 cut(s)	45, 999
Hin1II	CATG	8 cut(s)	91, 208, 238, 506, 580, 617, 647, 739
Hin6I	GCGC	3 cut(s)	45, 74, 932
HinP1I	GCGC	3 cut(s)	45, 74, 932
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	6 cut(s)	166, 317, 769, 820, 1014, 1049
HpaII	CCGG	4 cut(s)	48, 435, 698, 824
HphI	GGTGA	2 cut(s)	46, 712
Hpy166II	GTNNAC	4 cut(s)	292, 406, 712, 1003
Hpy188I	TCNGA	2 cut(s)	601, 1048
Hpy188III	TCNNGA	2 cut(s)	112, 139
Hpy8I	GTNNAC	4 cut(s)	292, 406, 712, 1003
Hpy99I	CGWCG	1 cut(s)	1048
HpyAV	CCTTC	2 cut(s)	346, 779
HpyCH4III	ACNGT	6 cut(s)	150, 161, 305, 684, 749, 1007
HpyCH4IV	ACGT	3 cut(s)	248, 273, 288
HpyCH4V	TGCA	4 cut(s)	65, 227, 617, 1112
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 71, 205, 573, 940
HpyF3I	CTNAG	5 cut(s)	70, 421, 598, 650, 1053
HpySE526I	ACGT	3 cut(s)	248, 273, 288
Hsp92I	GRCGYC	2 cut(s)	45, 999
Hsp92II	CATG	8 cut(s)	91, 208, 238, 506, 580, 617, 647, 739
HspAI	GCGC	3 cut(s)	45, 74, 932
KasI	GGCGCC	1 cut(s)	44
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	592, 751
LmnI	GCTCC	2 cut(s)	524, 608
Lsp1109I	GCAGC	2 cut(s)	63, 1096
LweI	GCATC	2 cut(s)	626, 886
MaeI	CTAG	2 cut(s)	372, 1034
MaeII	ACGT	3 cut(s)	248, 273, 288
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	594, 753
MboI	GATC	2 cut(s)	592, 751
MboII	GAAGA	8 cut(s)	100, 131, 154, 161, 344, 376, 856, 1079
MhlI	GDGCHC	2 cut(s)	613, 883
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	7 cut(s)	453, 568, 660, 669, 688, 866, 1029
MluNI	TGGCCA	1 cut(s)	431
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	3 cut(s)	175, 326, 814
MmeI	TCCRAC	2 cut(s)	991, 1026
MnlI	CCTC	9 cut(s)	79, 108, 113, 146, 210, 382, 704, 893, 1017
Mox20I	TGGCCA	1 cut(s)	431
Mph1103I	ATGCAT	1 cut(s)	619
MroNI	GCCGGC	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	3 cut(s)	218, 486, 1085
MslI	CAYNNNNRTG	3 cut(s)	92, 374, 507
Msp20I	TGGCCA	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	782
MspI	CCGG	4 cut(s)	48, 435, 698, 824
MspR9I	CCNGG	4 cut(s)	449, 471, 698, 834
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	3 cut(s)	449, 471, 834
MwoI	GCNNNNNNNGC	5 cut(s)	57, 71, 205, 573, 940
NaeI	GCCGGC	1 cut(s)	49
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	1 cut(s)	698
NdeII	GATC	2 cut(s)	592, 751
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	8 cut(s)	91, 208, 238, 506, 580, 617, 647, 739
NlaIV	GGNNCC	3 cut(s)	46, 96, 880
NmuCI	GTSAC	1 cut(s)	305
NsbI	TGCGCA	1 cut(s)	933
NsiI	ATGCAT	1 cut(s)	619
OliI	CACNNNNGTG	1 cut(s)	374
PctI	GAATGC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	3 cut(s)	769, 1014, 1049
PkrI	GCNGC	3 cut(s)	78, 210, 1111
PleI	GAGTC	3 cut(s)	174, 325, 814
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	3 cut(s)	174, 325, 814
PsiI	TTATAA	1 cut(s)	516
Psp124BI	GAGCTC	1 cut(s)	613
Psp6I	CCWGG	3 cut(s)	447, 469, 832
PspFI	CCCAGC	1 cut(s)	758
PspGI	CCWGG	3 cut(s)	447, 469, 832
PspN4I	GGNNCC	3 cut(s)	46, 96, 880
PspPI	GGNCC	3 cut(s)	50, 150, 788
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	4 cut(s)	272, 407, 648, 666
RsaNI	GTAC	4 cut(s)	271, 406, 647, 665
RseI	CAYNNNNRTG	3 cut(s)	92, 374, 507
SacI	GAGCTC	1 cut(s)	613
SaqAI	TTAA	3 cut(s)	218, 486, 1085
SatI	GCNGC	3 cut(s)	77, 209, 1110
Sau3AI	GATC	2 cut(s)	592, 751
Sau96I	GGNCC	3 cut(s)	50, 150, 788
SchI	GAGTC	3 cut(s)	175, 326, 814
ScrFI	CCNGG	4 cut(s)	449, 471, 698, 834
SduI	GDGCHC	2 cut(s)	613, 883
SfaNI	GCATC	2 cut(s)	626, 886
SfcI	CTRYAG	1 cut(s)	745
SfoI	GGCGCC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	3 cut(s)	92, 374, 507
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
Sse9I	AATT	7 cut(s)	453, 568, 660, 669, 688, 866, 1029
SsiI	CCGC	3 cut(s)	209, 413, 522
SspDI	GGCGCC	1 cut(s)	44
SspI	AATATT	1 cut(s)	859
SspMI	CTAG	2 cut(s)	372, 1034
SstI	GAGCTC	1 cut(s)	613
StyD4I	CCNGG	4 cut(s)	447, 469, 696, 832
TaaI	ACNGT	6 cut(s)	150, 161, 305, 684, 749, 1007
TaiI	ACGT	3 cut(s)	251, 276, 291
TaqI	TCGA	3 cut(s)	111, 894, 922
TasI	AATT	7 cut(s)	453, 568, 660, 669, 688, 866, 1029
TatI	WGTACW	2 cut(s)	405, 646
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	3 cut(s)	769, 1014, 1049
Tru1I	TTAA	3 cut(s)	218, 486, 1085
Tru9I	TTAA	3 cut(s)	218, 486, 1085
TscAI	CASTG	3 cut(s)	229, 754, 986
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	2 cut(s)	76, 1109
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	7 cut(s)	161, 223, 241, 491, 632, 714, 761
TspRI	CASTG	3 cut(s)	229, 754, 986
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	3 cut(s)	688, 866, 1029
XmiI	GTMKAC	2 cut(s)	711, 1002
XspI	CTAG	2 cut(s)	372, 1034
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.