Rroxscaffold_5G00364300

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009002
Physical Location & Seq
Forward (+)
45537514 .. 45539588
2075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364300.1

Sequence Viewer

Length: 1125 bp
ATGGAGAACAGTGTGTTTGAGAATGCTTCGGTGGTGATAGTAGGCGCCGGCCCCGTCAGGCATCGCAACCTCAGCGCTGCTCAACTCCATGTTGGTGCCAAACATCGTCTTCGAGAGGGAAGACTGTTGTGCTTCCTCTGGAAGAAACGGTCTTATGACCGTTTGAGTCTTCATTTGGCGAAAAACTTTTGCACTCTACCTCTCATGCCGCACCCATTCAGCACTGCAACTTTCATGTCCAAAGACACGTTCATAAGCTATATGGACGAGTACGTTTCCCGTTTCAACGTCAACCCCCATTACTGTCACAATGTTGAGTCGGCTTTTTACGAAGAAGCTGATAAAAAATGGAAGGTTGAAGTGAAGAACACTAGAGTGACTGATGAGGTTTGCCCCCAAGTGTACTATGCGGATTTCTTAGTGGTGGCCACCGGAGAAAATAGCCAGGCAATTATCCCAGAGTTGCCTGGACTGGAGACCTTTAATGGAAAGGTTATTCATGCGAGTGATTATAAATGTGGAGCGAGTTTTAAAGATAAGAGTGTGTTGGTCATTGGTTGTGGCAATTCTGGCATGGAGATTAGTAATGATCTCTCAGAAAATGGAGCTCATGCATCCATTGTTGTTAGAAGCCAACTTCATGTACTTAGCAGAGAAATTGTACGAATTGGAATGATACTGTTGAATTTCCTCCCGGTGAATATGGTAGACAGGTTCGTTTCATTTCTTGCCAAGTTTAGCTACAGTGATCTGCCCACCTATGGGATTCATCAACCAGCTGAAGGCCCTTTTTTCTATAAAACACTTACTGGAAAGACTCCGGTAATCGATCGTGGAACTATCAAGAAAATTCGCTCCCAAAAGATTAAGGTTTTCCCAGGAATAGAGAAGATACACAACAATATTGTGGAATTCAAAAATGGTGCCCTCCAGCGTTTCGATGCCATGGATGACAAGCCTAAGAACAAGTATCCAAACCACTGGAAAGGAGAAAAGGGCGTCTACTGTGTTGGATTCACAGGGAGGGGAATTCAAGGGATTTCGTCGGATTCTAAGGCTGTTGCTGAAGATATCTATCAGCTTGTAATGGCACAGAAACCCACTTACGCTGCAAGAATGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

374

Amino Acids

42.09

Weight (kDa)

9.11

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 60 - 245 7e-17 Flavin-binding monooxygenase-like
Pyr_redox_3 PF13738 74 - 212 9.1e-13 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2 PF07992 74 - 211 8.9e-10 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 75 - 209 1.5e-11 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
AccB1I GGYRCC 3 cut(s) 44, 95, 923
AccI GTMKAC 2 cut(s) 708, 1002
AciI CCGC 2 cut(s) 209, 410
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 4 cut(s) 685, 849, 911, 1029
AcuI CTGAAG 2 cut(s) 801, 1086
AcyI GRCGYC 2 cut(s) 45, 999
AfaI GTAC 4 cut(s) 272, 404, 645, 663
AfeI AGCGCT 1 cut(s) 76
AfiI CCNNNNNNNGG 3 cut(s) 761, 762, 782
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 5 cut(s) 286, 359, 685, 916, 1034
AjnI CCWGG 3 cut(s) 444, 466, 877
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AleI CACNNNNGTG 1 cut(s) 374
AluBI AGCT 6 cut(s) 258, 338, 608, 741, 779, 1081
AluI AGCT 6 cut(s) 258, 338, 608, 741, 779, 1081
Alw21I GWGCWC 1 cut(s) 610
Alw26I GTCTC 1 cut(s) 470
Aor51HI AGCGCT 1 cut(s) 76
AoxI GGCC 3 cut(s) 49, 426, 784
ApeKI GCWGC 2 cut(s) 77, 1109
ApoI RAATTY 4 cut(s) 685, 849, 911, 1029
AspLEI GCGC 2 cut(s) 47, 77
AspS9I GGNCC 2 cut(s) 50, 785
AsuC2I CCSGG 1 cut(s) 695
AsuHPI GGTGA 2 cut(s) 46, 709
BaeGI GKGCMC 1 cut(s) 928
BalI TGGCCA 1 cut(s) 428
BanI GGYRCC 3 cut(s) 44, 95, 923
BanII GRGCYC 1 cut(s) 610
BbsI GAAGAC 3 cut(s) 101, 127, 161
Bbv12I GWGCWC 1 cut(s) 610
BbvCI CCTCAGC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 64, 1096
BciT130I CCWGG 3 cut(s) 446, 468, 879
BciVI GTATCC 1 cut(s) 981
BcnI CCSGG 1 cut(s) 695
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 742
BfoI RGCGCY 2 cut(s) 48, 78
BfuI GTATCC 1 cut(s) 981
BisI GCNGC 3 cut(s) 78, 209, 1110
BlsI GCNGC 3 cut(s) 79, 210, 1111
Bme1390I CCNGG 4 cut(s) 446, 468, 695, 879
BmgT120I GGNCC 2 cut(s) 50, 785
BmiI GGNNCC 4 cut(s) 46, 52, 97, 925
BmrFI CCNGG 4 cut(s) 446, 468, 695, 879
BmsI GCATC 3 cut(s) 70, 623, 931
BpiI GAAGAC 3 cut(s) 101, 127, 161
BpmI CTGGAG 2 cut(s) 494, 914
Bpu10I CCTNAGC 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 695
Bsa29I ATCGAT 1 cut(s) 828
BsaBI GATNNNNATC 1 cut(s) 1074
BsaHI GRCGYC 2 cut(s) 45, 999
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 2 cut(s) 877, 945
BsaWI WCCGGW 2 cut(s) 431, 820
Bsc4I CCNNNNNNNGG 3 cut(s) 761, 762, 782
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 3 cut(s) 477, 814, 986
Bse8I GATNNNNATC 1 cut(s) 1074
BseBI CCWGG 3 cut(s) 446, 468, 879
BseCI ATCGAT 1 cut(s) 828
BseDI CCNNGG 2 cut(s) 877, 945
BseGI GGATG 2 cut(s) 614, 955
BseJI GATNNNNATC 1 cut(s) 1074
BseLI CCNNNNNNNGG 3 cut(s) 761, 762, 782
BseMII CTCAG 2 cut(s) 85, 609
BseNI ACTGG 3 cut(s) 477, 814, 986
BseSI GKGCMC 1 cut(s) 928
BseXI GCAGC 2 cut(s) 64, 1096
Bsh1285I CGRYCG 1 cut(s) 832
BshFI GGCC 3 cut(s) 51, 428, 786
BshNI GGYRCC 3 cut(s) 44, 95, 923
BshVI ATCGAT 1 cut(s) 828
BsiEI CGRYCG 1 cut(s) 832
BsiHKAI GWGCWC 1 cut(s) 610
BsiSI CCGG 4 cut(s) 48, 432, 695, 821
BslI CCNNNNNNNGG 3 cut(s) 761, 762, 782
BsmAI GTCTC 1 cut(s) 470
BsmI GAATGC 1 cut(s) 28
BsnI GGCC 3 cut(s) 51, 428, 786
Bso31I GGTCTC 1 cut(s) 470
Bsp1286I GDGCHC 2 cut(s) 610, 928
Bsp143I GATC 3 cut(s) 589, 748, 829
Bsp19I CCATGG 1 cut(s) 945
BspACI CCGC 2 cut(s) 209, 410
BspANI GGCC 3 cut(s) 51, 428, 786
BspCNI CTCAG 2 cut(s) 84, 608
BspDI ATCGAT 1 cut(s) 828
BspLI GGNNCC 4 cut(s) 46, 52, 97, 925
BspT107I GGYRCC 3 cut(s) 44, 95, 923
BspTNI GGTCTC 1 cut(s) 470
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 3 cut(s) 477, 814, 986
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 877, 945
BssMI GATC 3 cut(s) 589, 748, 829
BssNI GRCGYC 2 cut(s) 45, 999
BssT1I CCWWGG 1 cut(s) 945
Bst2UI CCWGG 3 cut(s) 446, 468, 879
Bst4CI ACNGT 8 cut(s) 11, 126, 150, 161, 305, 681, 746, 1007
BstACI GRCGYC 2 cut(s) 45, 999
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 6 cut(s) 71, 418, 595, 647, 960, 1053
BstDSI CCRYGG 1 cut(s) 945
BstF5I GGATG 2 cut(s) 614, 955
BstH2I RGCGCY 2 cut(s) 48, 78
BstHHI GCGC 2 cut(s) 47, 77
BstKTI GATC 3 cut(s) 592, 751, 832
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 3 cut(s) 589, 748, 829
BstMCI CGRYCG 1 cut(s) 832
BstMWI GCNNNNNNNGC 2 cut(s) 72, 570
BstNI CCWGG 3 cut(s) 446, 468, 879
BstSCI CCNGG 4 cut(s) 444, 466, 693, 877
BstSFI CTRYAG 1 cut(s) 742
BstSLI GKGCMC 1 cut(s) 928
BstV1I GCAGC 2 cut(s) 64, 1096
BstV2I GAAGAC 3 cut(s) 101, 127, 161
BstXI CCANNNNNNTGG 1 cut(s) 981
Bsu15I ATCGAT 1 cut(s) 828
BsuI GTATCC 1 cut(s) 981
BsuRI GGCC 3 cut(s) 51, 428, 786
BsuTUI ATCGAT 1 cut(s) 828
BtgI CCRYGG 1 cut(s) 945
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 614, 955
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 4 cut(s) 16, 222, 751, 979
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 2 cut(s) 47, 77
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 50, 785
ClaI ATCGAT 1 cut(s) 828
CseI GACGC 1 cut(s) 988
Csp6I GTAC 4 cut(s) 271, 403, 644, 662
CviAII CATG 8 cut(s) 89, 205, 235, 500, 574, 611, 641, 946
CviQI GTAC 4 cut(s) 271, 403, 644, 662
DdeI CTNAG 6 cut(s) 71, 418, 595, 647, 960, 1053
DinI GGCGCC 1 cut(s) 46
DpnI GATC 3 cut(s) 591, 750, 831
DpnII GATC 3 cut(s) 589, 748, 829
DraI TTTAAA 1 cut(s) 532
EaeI YGGCCR 1 cut(s) 426
Ecl136II GAGCTC 1 cut(s) 608
Eco130I CCWWGG 1 cut(s) 945
Eco24I GRGCYC 1 cut(s) 610
Eco31I GGTCTC 1 cut(s) 470
Eco32I GATATC 1 cut(s) 1072
Eco47III AGCGCT 1 cut(s) 76
Eco53kI GAGCTC 1 cut(s) 608
Eco57I CTGAAG 2 cut(s) 801, 1086
EcoICRI GAGCTC 1 cut(s) 608
EcoO109I RGGNCCY 1 cut(s) 785
EcoRI GAATTC 2 cut(s) 911, 1029
EcoRII CCWGG 3 cut(s) 444, 466, 877
EcoRV GATATC 1 cut(s) 1072
EcoT14I CCWWGG 1 cut(s) 945
EcoT22I ATGCAT 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 610
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 945
FaeI CATG 8 cut(s) 92, 208, 238, 503, 577, 614, 644, 949
FatI CATG 8 cut(s) 88, 204, 234, 499, 573, 610, 640, 945
FblI GTMKAC 2 cut(s) 708, 1002
Fnu4HI GCNGC 3 cut(s) 78, 209, 1110
FokI GGATG 2 cut(s) 601, 962
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 3 cut(s) 78, 209, 1110
FspBI CTAG 1 cut(s) 372
GlaI GCGC 2 cut(s) 46, 76
GluI GCNGC 3 cut(s) 78, 209, 1110
GsuI CTGGAG 2 cut(s) 494, 914
HaeII RGCGCY 2 cut(s) 48, 78
HaeIII GGCC 3 cut(s) 51, 428, 786
HapII CCGG 4 cut(s) 48, 432, 695, 821
HgaI GACGC 1 cut(s) 988
HhaI GCGC 2 cut(s) 47, 77
Hin1I GRCGYC 2 cut(s) 45, 999
Hin1II CATG 8 cut(s) 92, 208, 238, 503, 577, 614, 644, 949
Hin6I GCGC 2 cut(s) 45, 75
HinP1I GCGC 2 cut(s) 45, 75
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 6 cut(s) 166, 317, 766, 817, 1014, 1049
HpaII CCGG 4 cut(s) 48, 432, 695, 821
HphI GGTGA 2 cut(s) 46, 709
Hpy166II GTNNAC 4 cut(s) 292, 403, 709, 1003
Hpy188I TCNGA 2 cut(s) 598, 1048
Hpy188III TCNNGA 3 cut(s) 113, 139, 844
Hpy8I GTNNAC 4 cut(s) 292, 403, 709, 1003
Hpy99I CGWCG 1 cut(s) 1048
HpyAV CCTTC 2 cut(s) 346, 776
HpyCH4III ACNGT 8 cut(s) 11, 126, 150, 161, 305, 681, 746, 1007
HpyCH4IV ACGT 3 cut(s) 248, 273, 288
HpyCH4V TGCA 4 cut(s) 192, 227, 614, 1112
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 570
HpyF3I CTNAG 6 cut(s) 71, 418, 595, 647, 960, 1053
HpySE526I ACGT 3 cut(s) 248, 273, 288
Hsp92I GRCGYC 2 cut(s) 45, 999
Hsp92II CATG 8 cut(s) 92, 208, 238, 503, 577, 614, 644, 949
HspAI GCGC 2 cut(s) 45, 75
KasI GGCGCC 1 cut(s) 44
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Kzo9I GATC 3 cut(s) 589, 748, 829
LmnI GCTCC 3 cut(s) 521, 605, 860
Lsp1109I GCAGC 2 cut(s) 64, 1096
LweI GCATC 3 cut(s) 70, 623, 931
MaeI CTAG 1 cut(s) 372
MaeII ACGT 3 cut(s) 248, 273, 288
MaeIII GTNAC 2 cut(s) 305, 376
MalI GATC 3 cut(s) 591, 750, 831
MboI GATC 3 cut(s) 589, 748, 829
MboII GAAGA 8 cut(s) 101, 132, 154, 161, 344, 376, 901, 1079
MhlI GDGCHC 2 cut(s) 610, 928
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 8 cut(s) 450, 565, 657, 666, 685, 849, 911, 1029
MluNI TGGCCA 1 cut(s) 428
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 3 cut(s) 175, 326, 811
MmeI TCCRAC 2 cut(s) 991, 1026
MnlI CCTC 8 cut(s) 80, 109, 146, 210, 379, 701, 938, 1017
Mox20I TGGCCA 1 cut(s) 428
Mph1103I ATGCAT 1 cut(s) 616
MroNI GCCGGC 1 cut(s) 47
MscI TGGCCA 1 cut(s) 428
MseI TTAA 3 cut(s) 483, 531, 867
MslI CAYNNNNRTG 3 cut(s) 93, 374, 504
Msp20I TGGCCA 1 cut(s) 428
MspA1I CMGCKG 1 cut(s) 779
MspI CCGG 4 cut(s) 48, 432, 695, 821
MspR9I CCNGG 4 cut(s) 446, 468, 695, 879
Mva1269I GAATGC 1 cut(s) 28
MvaI CCWGG 3 cut(s) 446, 468, 879
MwoI GCNNNNNNNGC 2 cut(s) 72, 570
NaeI GCCGGC 1 cut(s) 49
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 1 cut(s) 695
NcoI CCATGG 1 cut(s) 945
NdeII GATC 3 cut(s) 589, 748, 829
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 8 cut(s) 92, 208, 238, 503, 577, 614, 644, 949
NlaIV GGNNCC 4 cut(s) 46, 52, 97, 925
NmuCI GTSAC 2 cut(s) 305, 376
NsiI ATGCAT 1 cut(s) 616
OliI CACNNNNGTG 1 cut(s) 374
PctI GAATGC 1 cut(s) 28
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 3 cut(s) 766, 1014, 1049
PkrI GCNGC 3 cut(s) 79, 210, 1111
Ple19I CGATCG 1 cut(s) 832
PleI GAGTC 3 cut(s) 174, 325, 811
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 3 cut(s) 174, 325, 811
PsiI TTATAA 1 cut(s) 513
Psp124BI GAGCTC 1 cut(s) 610
Psp6I CCWGG 3 cut(s) 444, 466, 877
PspGI CCWGG 3 cut(s) 444, 466, 877
PspN4I GGNNCC 4 cut(s) 46, 52, 97, 925
PspPI GGNCC 2 cut(s) 50, 785
PvuI CGATCG 1 cut(s) 832
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 4 cut(s) 272, 404, 645, 663
RsaNI GTAC 4 cut(s) 271, 403, 644, 662
RseI CAYNNNNRTG 3 cut(s) 93, 374, 504
SacI GAGCTC 1 cut(s) 610
SaqAI TTAA 3 cut(s) 483, 531, 867
SatI GCNGC 3 cut(s) 78, 209, 1110
Sau3AI GATC 3 cut(s) 589, 748, 829
Sau96I GGNCC 2 cut(s) 50, 785
SchI GAGTC 3 cut(s) 175, 326, 811
ScrFI CCNGG 4 cut(s) 446, 468, 695, 879
SduI GDGCHC 2 cut(s) 610, 928
SfaNI GCATC 3 cut(s) 70, 623, 931
SfcI CTRYAG 1 cut(s) 742
SfoI GGCGCC 1 cut(s) 46
SmiMI CAYNNNNRTG 3 cut(s) 93, 374, 504
Sse9I AATT 8 cut(s) 450, 565, 657, 666, 685, 849, 911, 1029
SsiI CCGC 2 cut(s) 209, 410
SspDI GGCGCC 1 cut(s) 44
SspI AATATT 1 cut(s) 904
SspMI CTAG 1 cut(s) 372
SstI GAGCTC 1 cut(s) 610
StyD4I CCNGG 4 cut(s) 444, 466, 693, 877
StyI CCWWGG 1 cut(s) 945
TaaI ACNGT 8 cut(s) 11, 126, 150, 161, 305, 681, 746, 1007
TaiI ACGT 3 cut(s) 251, 276, 291
TaqI TCGA 3 cut(s) 112, 828, 939
TasI AATT 8 cut(s) 450, 565, 657, 666, 685, 849, 911, 1029
TatI WGTACW 2 cut(s) 402, 643
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 3 cut(s) 766, 1014, 1049
Tru1I TTAA 3 cut(s) 483, 531, 867
Tru9I TTAA 3 cut(s) 483, 531, 867
TscAI CASTG 4 cut(s) 16, 229, 751, 986
TseFI GTSAC 2 cut(s) 305, 376
TseI GCWGC 2 cut(s) 77, 1109
Tsp45I GTSAC 2 cut(s) 305, 376
TspDTI ATGAA 7 cut(s) 161, 223, 241, 488, 629, 711, 758
TspRI CASTG 4 cut(s) 16, 229, 751, 986
XapI RAATTY 4 cut(s) 685, 849, 911, 1029
XmiI GTMKAC 2 cut(s) 708, 1002
XspI CTAG 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.