Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009286.1

Orthogroup ID

OG0009002

Physical Location & Seq

Genomic Coordinates Forward (+)

42565 .. 44609

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009286.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atggagaacaatgtgtttgagaatgcttcggtggtgatagtaggcgccggcccgtcaggcattgcaacctcagcgctgctcaactccatgttggtgccaaacctcgtcttcgagagggaagactgttgtgcttccctatggaagaaacggtcctacgaccgtttgagtcttcatttggcgaaaaacttttgctctctgcctctcttgccgcacccattaagcactgcaactttcatgtccaaagacacgttcataagctatatggacgagtacgtttcccgtttcaacgtcaacccccattactgtcacaatgttgagtcggctttttacgaagaagctgataaaaaatggaaggttgaagtgaagaacactagggtggctgataaggaggtttgcccccaagtgtactatgcggatttcttagtggtggccaccggagaaaatagccaggcaattatcccagagttgcctggactggagacctttaatggaaaggttattcatgcgagtgattataaatgcggagcgagttttagagataagagtgtgttggtcattggttgtggcaattctggcatggagattagtaatgatctctcagaaaatggagctcatgcatccattgttgttagaagccaacttcatgtacttagcagagaaattgtaagaattgggatgatactgttgaatttcctcccgatgaatatggtagacaggttcgtttcatttcttgccatgtttagctacagtgatctgcccagctatgggattcatcaaccagctgaaggcccttttttctacaaaacacttactggaaagactccggttttcccaggaatagagaagatacacaacaatattgtggaattcaaaaatggtgccctccagcgtttcgatgccattgtgttggcaactggttatcgaagcgttgcgcacaactggctcaaggattataagttcatttttaatgaggataacaagcctaagaacaagtatccaaaccactggaaaggagaaaagggcgtctactgtgttggattcacagggagaggaattcaagggatttcgtcggattctaaggctgttgctgaagatatctatcagcttgtaatggcacagaaacccacttatgctgcaagaatggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

382

Amino Acids

42.77

Weight (kDa)

7.15

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48910
fragaria_vesca	FvH4_4g17980
malus_domestica	MD15G1133800.v1.1
prunus_persica	Prupe.6G157400_v2.0.a1 Prupe.6G157500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422151 RchiOBHm_Chr4g0422171
rosa_laevigata	RLG00000007629 RLG00000007630
rosa_multiflora	Rmu_co8426579.1_g000001 Rmu_sc0004902.1_g000002 Rmu_sc0009286.1_g000009
rosa_roxburghii	Rroxscaffold_5G00364300
rosa_rugosa	Rorug04G0177600 Rorug04G0177700
rosa_samantha	Rh4AG237300 Rh4AG237400 Rh4BG240100 Rh4BG240400 Rh4CG252000 Rh4CG252300
rosa_wichuraiana	Rw4G020530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	516, 954
Acc16I	TGCGCA	1 cut(s)	933
AccB1I	GGYRCC	3 cut(s)	44, 94, 878
AccI	GTMKAC	2 cut(s)	711, 1026
AciI	CCGC	3 cut(s)	209, 413, 522
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	3 cut(s)	688, 866, 1053
AcuI	CTGAAG	2 cut(s)	804, 1110
AcyI	GRCGYC	2 cut(s)	45, 1023
AfaI	GTAC	3 cut(s)	272, 407, 648
AfeI	AGCGCT	1 cut(s)	75
AfiI	CCNNNNNNNGG	3 cut(s)	764, 765, 785
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	5 cut(s)	286, 359, 688, 871, 1058
AjnI	CCWGG	3 cut(s)	447, 469, 832
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AleI	CACNNNNGTG	1 cut(s)	374
AloI	GAACNNNNNNTCC	2 cut(s)	941, 973
AluBI	AGCT	7 cut(s)	258, 338, 611, 744, 762, 782, 1105
AluI	AGCT	7 cut(s)	258, 338, 611, 744, 762, 782, 1105
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	1 cut(s)	473
Aor51HI	AGCGCT	1 cut(s)	75
AoxI	GGCC	3 cut(s)	49, 429, 787
ApeKI	GCWGC	2 cut(s)	76, 1133
ApoI	RAATTY	3 cut(s)	688, 866, 1053
AspLEI	GCGC	3 cut(s)	47, 76, 934
AspS9I	GGNCC	3 cut(s)	50, 150, 788
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	883
BalI	TGGCCA	1 cut(s)	431
BanI	GGYRCC	3 cut(s)	44, 94, 878
BanII	GRGCYC	1 cut(s)	613
BbsI	GAAGAC	3 cut(s)	100, 126, 161
Bbv12I	GWGCWC	1 cut(s)	613
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	63, 1120
BciT130I	CCWGG	3 cut(s)	449, 471, 834
BciVI	GTATCC	1 cut(s)	1005
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	745
BfoI	RGCGCY	2 cut(s)	48, 77
BfuI	GTATCC	1 cut(s)	1005
BglI	GCCNNNNNGGC	1 cut(s)	57
BisI	GCNGC	3 cut(s)	77, 209, 1134
BlsI	GCNGC	3 cut(s)	78, 210, 1135
Bme1390I	CCNGG	3 cut(s)	449, 471, 834
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	3 cut(s)	50, 150, 788
BmiI	GGNNCC	3 cut(s)	46, 96, 880
BmrFI	CCNGG	3 cut(s)	449, 471, 834
BmsI	GCATC	2 cut(s)	626, 886
BpiI	GAAGAC	3 cut(s)	100, 126, 161
BpmI	CTGGAG	2 cut(s)	497, 869
Bpu10I	CCTNAGC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	929
BsaBI	GATNNNNATC	1 cut(s)	1098
BsaHI	GRCGYC	2 cut(s)	45, 1023
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	832
BsaWI	WCCGGW	2 cut(s)	434, 823
Bsc4I	CCNNNNNNNGG	3 cut(s)	764, 765, 785
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	5 cut(s)	480, 817, 919, 944, 1010
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	1098
BseBI	CCWGG	3 cut(s)	449, 471, 834
BseDI	CCNNGG	1 cut(s)	832
BseGI	GGATG	2 cut(s)	617, 681
BseJI	GATNNNNATC	1 cut(s)	1098
BseLI	CCNNNNNNNGG	3 cut(s)	764, 765, 785
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	84, 612
BseNI	ACTGG	5 cut(s)	480, 817, 919, 944, 1010
BseSI	GKGCMC	1 cut(s)	883
BseXI	GCAGC	2 cut(s)	63, 1120
BseYI	CCCAGC	1 cut(s)	758
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	51, 431, 789
BshNI	GGYRCC	3 cut(s)	44, 94, 878
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	613
BsiSI	CCGG	3 cut(s)	48, 435, 824
BslI	CCNNNNNNNGG	3 cut(s)	764, 765, 785
BsmAI	GTCTC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	51, 431, 789
Bso31I	GGTCTC	1 cut(s)	473
Bsp1286I	GDGCHC	2 cut(s)	613, 883
Bsp143I	GATC	2 cut(s)	592, 751
BspACI	CCGC	3 cut(s)	209, 413, 522
BspANI	GGCC	3 cut(s)	51, 431, 789
BspCNI	CTCAG	2 cut(s)	83, 611
BspLI	GGNNCC	3 cut(s)	46, 96, 880
BspT107I	GGYRCC	3 cut(s)	44, 94, 878
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	5 cut(s)	480, 817, 919, 944, 1010
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	832
BssMI	GATC	2 cut(s)	592, 751
BssNI	GRCGYC	2 cut(s)	45, 1023
Bst2UI	CCWGG	3 cut(s)	449, 471, 834
Bst4CI	ACNGT	7 cut(s)	125, 150, 161, 305, 684, 749, 1031
BstACI	GRCGYC	2 cut(s)	45, 1023
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	6 cut(s)	70, 421, 598, 650, 984, 1077
BstF5I	GGATG	2 cut(s)	617, 681
BstH2I	RGCGCY	2 cut(s)	48, 77
BstHHI	GCGC	3 cut(s)	47, 76, 934
BstKTI	GATC	2 cut(s)	595, 754
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	2 cut(s)	592, 751
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 71, 205, 573, 940
BstNI	CCWGG	3 cut(s)	449, 471, 834
BstSCI	CCNGG	3 cut(s)	447, 469, 832
BstSFI	CTRYAG	1 cut(s)	745
BstSLI	GKGCMC	1 cut(s)	883
BstV1I	GCAGC	2 cut(s)	63, 1120
BstV2I	GAAGAC	3 cut(s)	100, 126, 161
BstXI	CCANNNNNNTGG	2 cut(s)	907, 1005
BsuI	GTATCC	1 cut(s)	1005
BsuRI	GGCC	3 cut(s)	51, 431, 789
BtsCI	GGATG	2 cut(s)	617, 681
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	3 cut(s)	222, 754, 1003
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	3 cut(s)	47, 76, 934
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	3 cut(s)	50, 150, 788
CseI	GACGC	1 cut(s)	1012
Csp6I	GTAC	3 cut(s)	271, 406, 647
CviAII	CATG	7 cut(s)	88, 235, 503, 577, 614, 644, 736
CviQI	GTAC	3 cut(s)	271, 406, 647
DdeI	CTNAG	6 cut(s)	70, 421, 598, 650, 984, 1077
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	2 cut(s)	594, 753
DpnII	GATC	2 cut(s)	592, 751
EaeI	YGGCCR	1 cut(s)	429
Ecl136II	GAGCTC	1 cut(s)	611
Eco24I	GRGCYC	1 cut(s)	613
Eco31I	GGTCTC	1 cut(s)	473
Eco32I	GATATC	1 cut(s)	1096
Eco47I	GGWCC	1 cut(s)	150
Eco47III	AGCGCT	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	611
Eco57I	CTGAAG	2 cut(s)	804, 1110
EcoICRI	GAGCTC	1 cut(s)	611
EcoO109I	RGGNCCY	1 cut(s)	788
EcoRI	GAATTC	2 cut(s)	866, 1053
EcoRII	CCWGG	3 cut(s)	447, 469, 832
EcoRV	GATATC	1 cut(s)	1096
EcoT22I	ATGCAT	1 cut(s)	619
EcoT38I	GRGCYC	1 cut(s)	613
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
FaeI	CATG	7 cut(s)	91, 238, 506, 580, 617, 647, 739
FatI	CATG	7 cut(s)	87, 234, 502, 576, 613, 643, 735
FblI	GTMKAC	2 cut(s)	711, 1026
Fnu4HI	GCNGC	3 cut(s)	77, 209, 1134
FokI	GGATG	2 cut(s)	604, 688
FriOI	GRGCYC	1 cut(s)	613
Fsp4HI	GCNGC	3 cut(s)	77, 209, 1134
FspBI	CTAG	1 cut(s)	372
FspI	TGCGCA	1 cut(s)	933
GlaI	GCGC	3 cut(s)	46, 75, 933
GluI	GCNGC	3 cut(s)	77, 209, 1134
GsaI	CCCAGC	1 cut(s)	762
GsuI	CTGGAG	2 cut(s)	497, 869
HaeII	RGCGCY	2 cut(s)	48, 77
HaeIII	GGCC	3 cut(s)	51, 431, 789
HapII	CCGG	3 cut(s)	48, 435, 824
HgaI	GACGC	1 cut(s)	1012
HhaI	GCGC	3 cut(s)	47, 76, 934
Hin1I	GRCGYC	2 cut(s)	45, 1023
Hin1II	CATG	7 cut(s)	91, 238, 506, 580, 617, 647, 739
Hin6I	GCGC	3 cut(s)	45, 74, 932
HinP1I	GCGC	3 cut(s)	45, 74, 932
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	6 cut(s)	166, 317, 769, 820, 1038, 1073
HpaII	CCGG	3 cut(s)	48, 435, 824
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	292, 406, 712, 1027
Hpy188I	TCNGA	2 cut(s)	601, 1072
Hpy188III	TCNNGA	2 cut(s)	112, 697
Hpy8I	GTNNAC	4 cut(s)	292, 406, 712, 1027
Hpy99I	CGWCG	1 cut(s)	1072
HpyAV	CCTTC	2 cut(s)	346, 779
HpyCH4III	ACNGT	7 cut(s)	125, 150, 161, 305, 684, 749, 1031
HpyCH4IV	ACGT	3 cut(s)	248, 273, 288
HpyCH4V	TGCA	4 cut(s)	65, 227, 617, 1136
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 71, 205, 573, 940
HpyF3I	CTNAG	6 cut(s)	70, 421, 598, 650, 984, 1077
HpySE526I	ACGT	3 cut(s)	248, 273, 288
Hsp92I	GRCGYC	2 cut(s)	45, 1023
Hsp92II	CATG	7 cut(s)	91, 238, 506, 580, 617, 647, 739
HspAI	GCGC	3 cut(s)	45, 74, 932
KasI	GGCGCC	1 cut(s)	44
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	592, 751
LmnI	GCTCC	2 cut(s)	524, 608
Lsp1109I	GCAGC	2 cut(s)	63, 1120
LweI	GCATC	2 cut(s)	626, 886
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	3 cut(s)	248, 273, 288
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	594, 753
MboI	GATC	2 cut(s)	592, 751
MboII	GAAGA	8 cut(s)	100, 131, 154, 161, 344, 376, 856, 1103
MhlI	GDGCHC	2 cut(s)	613, 883
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	7 cut(s)	453, 568, 660, 669, 688, 866, 1053
MluNI	TGGCCA	1 cut(s)	431
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	3 cut(s)	175, 326, 814
MmeI	TCCRAC	2 cut(s)	1015, 1050
MnlI	CCTC	9 cut(s)	79, 108, 113, 210, 382, 704, 893, 964, 1043
Mox20I	TGGCCA	1 cut(s)	431
Mph1103I	ATGCAT	1 cut(s)	619
MroNI	GCCGGC	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	3 cut(s)	218, 486, 966
MslI	CAYNNNNRTG	3 cut(s)	92, 374, 507
Msp20I	TGGCCA	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	782
MspI	CCGG	3 cut(s)	48, 435, 824
MspR9I	CCNGG	3 cut(s)	449, 471, 834
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	3 cut(s)	449, 471, 834
MwoI	GCNNNNNNNGC	5 cut(s)	57, 71, 205, 573, 940
NaeI	GCCGGC	1 cut(s)	49
NarI	GGCGCC	1 cut(s)	45
NdeII	GATC	2 cut(s)	592, 751
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	7 cut(s)	91, 238, 506, 580, 617, 647, 739
NlaIV	GGNNCC	3 cut(s)	46, 96, 880
NmuCI	GTSAC	1 cut(s)	305
NsbI	TGCGCA	1 cut(s)	933
NsiI	ATGCAT	1 cut(s)	619
OliI	CACNNNNGTG	1 cut(s)	374
PctI	GAATGC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	3 cut(s)	769, 1038, 1073
PkrI	GCNGC	3 cut(s)	78, 210, 1135
PleI	GAGTC	3 cut(s)	174, 325, 814
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	3 cut(s)	174, 325, 814
PsiI	TTATAA	2 cut(s)	516, 954
Psp124BI	GAGCTC	1 cut(s)	613
Psp6I	CCWGG	3 cut(s)	447, 469, 832
PspFI	CCCAGC	1 cut(s)	758
PspGI	CCWGG	3 cut(s)	447, 469, 832
PspN4I	GGNNCC	3 cut(s)	46, 96, 880
PspPI	GGNCC	3 cut(s)	50, 150, 788
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	3 cut(s)	272, 407, 648
RsaNI	GTAC	3 cut(s)	271, 406, 647
RseI	CAYNNNNRTG	3 cut(s)	92, 374, 507
SacI	GAGCTC	1 cut(s)	613
SaqAI	TTAA	3 cut(s)	218, 486, 966
SatI	GCNGC	3 cut(s)	77, 209, 1134
Sau3AI	GATC	2 cut(s)	592, 751
Sau96I	GGNCC	3 cut(s)	50, 150, 788
SchI	GAGTC	3 cut(s)	175, 326, 814
ScrFI	CCNGG	3 cut(s)	449, 471, 834
SduI	GDGCHC	2 cut(s)	613, 883
SfaNI	GCATC	2 cut(s)	626, 886
SfcI	CTRYAG	1 cut(s)	745
SfoI	GGCGCC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	3 cut(s)	92, 374, 507
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
Sse9I	AATT	7 cut(s)	453, 568, 660, 669, 688, 866, 1053
SsiI	CCGC	3 cut(s)	209, 413, 522
SspDI	GGCGCC	1 cut(s)	44
SspI	AATATT	1 cut(s)	859
SspMI	CTAG	1 cut(s)	372
SstI	GAGCTC	1 cut(s)	613
StyD4I	CCNGG	3 cut(s)	447, 469, 832
TaaI	ACNGT	7 cut(s)	125, 150, 161, 305, 684, 749, 1031
TaiI	ACGT	3 cut(s)	251, 276, 291
TaqI	TCGA	3 cut(s)	111, 894, 922
TasI	AATT	7 cut(s)	453, 568, 660, 669, 688, 866, 1053
TatI	WGTACW	2 cut(s)	405, 646
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	3 cut(s)	769, 1038, 1073
Tru1I	TTAA	3 cut(s)	218, 486, 966
Tru9I	TTAA	3 cut(s)	218, 486, 966
TscAI	CASTG	3 cut(s)	229, 754, 1010
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	2 cut(s)	76, 1133
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	9 cut(s)	161, 223, 241, 491, 632, 714, 716, 761, 949
TspRI	CASTG	3 cut(s)	229, 754, 1010
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	3 cut(s)	688, 866, 1053
XmiI	GTMKAC	2 cut(s)	711, 1026
XspI	CTAG	1 cut(s)	372
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.