Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003367

Physical Location & Seq

Genomic Coordinates Forward (+)

18442882 .. 18445350

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGTCTTTTGAGGAGTTTACGCCGTTAAACGAGAAGTCTCTTGTAGACTACATCAAGTCAACACCTGCTCTCTCTTCCAAGATCGGAGCCGACAAGTCCGATGATGATTTGGTTATCAAAGAAGTTGGAGATGGCAATCTCAATTTCGTTTTCATCGTTGTTGGATCCTCTGGTTCTCTTGTCATCAAACAGGCTCTTCCATATATTCGCTGTATCGGTGAATCATGGCCAATGACGAAAGAAAGAGCTTATTTTGAAGCAACAACTTTGAGAAAGCATGGAAATTTATCACCTGATCATGTTCCTGAAGTCTACCATTTTGACAGAACAATGGCGTTGATTGGAATGAGATACCTTGAGCCTCCTCATATCATTCTCCGCAAAGGACTCATTGCTGGGATTGAGTATCCTTTCCTCGCAGACCACATGTCTGATTACATGGCGAAGACTCTCTTCTTCACTTCTCTCCTCTATCACGATACCACAGAGCACAGAAGAGCAGTAACCGAATTTTGTGGTAATGTGGAGTTATGCCGATTAACGGAGCAAGTTGTGTTTTCGGACCCATATAGAGTTTCCACATTTAATCGTTGGACTTCACCTTATCTTGATGATGATGCTAAGGCTGTGCGCGAAGACAGTGCCTTGAAGCTCGAAATCGCAGAGCTAAAATCGATGTTCTGTGAAAGAGCTCAAGCTTTAATACATGGTGATCTTCATACTGGTTCTGTCATGGTTACTCAAGATTCAACGCAAGTTATAGATCCAGAGTTTTCGTTCTATGGACCGATGGGTTTCGATATTGGCGCTTATCTTGGTAACTTGATACTAGCTTTCTTTGCACAAGATGGACACGCCACTCAGGAAAATGATCGAAAAGAATACAAGCAGTGGATCTTGAGAACCATTGAGCAAACTTGGAATTTGTTTAACAAAAGGTTCATTGCGCTATGGGATCAAAACAAAGATGGACCAGGCGAAGCATACCTTGCAGATATCTATAACAATACCGAGGTTTTGAAGTTTGTTCAAGAAAACTACATGAGGAATTTGTTGCATGACTCACTCGGATTCGGCGCTGCAAAGATGATTAGGAGAATTGTGGGAGTGGCACATGTTGAGGACTTTGAATCAATCGAAGAAGATAAGCGAAGAGCTATTTGCGAGAGAAGTGCACTCGAGTTTGCGAAGATGCTTCTCAAGGAAAGGAGAAAGTTTAAGAGTATCGGTGAAGTTGTTTCAGCAATTCAACAACAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019509 GO:0019752 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042802 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046522 GO:0050896 GO:0051716 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

APH

Protein Analysis

420

Amino Acids

48.07

Weight (kDa)

5.47

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APH	PF01636	40 - 274	3.8e-11	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49820
fragaria_vesca	FvH4_2g05040
malus_domestica	MD10G1098200.v1.1 MD10G1098700.v1.1 MD10G1147300.v1.1
prunus_persica	Prupe.7G233900_v2.0.a1 Prupe.8G136000_v2.0.a1
pyrus_communis	pycom10g08390
rosa_chinensis	RchiOBHm_Chr2g0122061 RchiOBHm_Chr6g0254911 RchiOBHm_Chr6g0254921
rosa_laevigata	RLG00000014878 RLG00000014883
rosa_multiflora	Rmu_sc0000016.1_g000011 Rmu_sc0003880.1_g000001 Rmu_sc0010925.1_g000019
rosa_roxburghii	Rroxscaffold_2G00122040 Rroxscaffold_7G00210480
rosa_rugosa	Rorug02G0236200 Rorug02G0236300 Rorug05G0555300
rosa_samantha	Rh2AG292600 Rh2BG303200 Rh2CG281700 Rh2DG316800 Rh6AG072700 Rh6BG064800 Rh6BG065000 Rh6CG063900 Rh6CG064800 Rh6DG061000 Rh6DG061800
rosa_wichuraiana	Rw0G002700 Rw2G023480 Rw6G006330 Rw6G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	73
Acc36I	ACCTGC	1 cut(s)	73
AccI	GTMKAC	2 cut(s)	45, 312
AccII	CGCG	1 cut(s)	633
AciI	CCGC	1 cut(s)	379
AclWI	GGATC	5 cut(s)	159, 172, 758, 902, 963
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	4 cut(s)	283, 509, 922, 1048
AcuI	CTGAAG	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	541
AflIII	ACRYGT	2 cut(s)	426, 1114
AgsI	TTSAA	7 cut(s)	257, 649, 750, 1021, 1031, 1130, 1250
AhdI	GACNNNNNGTC	1 cut(s)	427
AjnI	CCWGG	1 cut(s)	973
AluBI	AGCT	8 cut(s)	248, 652, 667, 692, 698, 833, 1157, 1260
AluI	AGCT	8 cut(s)	248, 652, 667, 692, 698, 833, 1157, 1260
Alw21I	GWGCWC	3 cut(s)	492, 694, 1177
Alw26I	GTCTC	1 cut(s)	42
Alw44I	GTGCAC	1 cut(s)	1173
AlwI	GGATC	5 cut(s)	159, 172, 758, 902, 963
Ama87I	CYCGRG	1 cut(s)	1178
AoxI	GGCC	1 cut(s)	227
ApaLI	GTGCAC	1 cut(s)	1173
ApeKI	GCWGC	1 cut(s)	1079
ApoI	RAATTY	4 cut(s)	283, 509, 922, 1048
AspLEI	GCGC	4 cut(s)	633, 809, 949, 1079
AspS9I	GGNCC	3 cut(s)	562, 785, 971
AsuHPI	GGTGA	5 cut(s)	230, 282, 591, 722, 1241
AvaI	CYCGRG	1 cut(s)	1178
AvaII	GGWCC	3 cut(s)	562, 785, 971
BaeGI	GKGCMC	1 cut(s)	1177
BalI	TGGCCA	1 cut(s)	229
BamHI	GGATCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	694
BbsI	GAAGAC	2 cut(s)	452, 642
Bbv12I	GWGCWC	3 cut(s)	492, 694, 1177
BbvI	GCAGC	1 cut(s)	1066
BccI	CCATC	4 cut(s)	125, 784, 842, 962
BceAI	ACGGC	1 cut(s)	7
BcgI	CGANNNNNNTGC	4 cut(s)	623, 657, 1154, 1188
BciT130I	CCWGG	1 cut(s)	975
BciVI	GTATCC	1 cut(s)	417
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	830
BfoI	RGCGCY	2 cut(s)	810, 1080
BfuAI	ACCTGC	1 cut(s)	73
BfuI	GTATCC	1 cut(s)	417
BisI	GCNGC	1 cut(s)	1080
BlsI	GCNGC	1 cut(s)	1081
Bme1390I	CCNGG	1 cut(s)	975
Bme18I	GGWCC	3 cut(s)	562, 785, 971
BmeRI	GACNNNNNGTC	1 cut(s)	427
BmeT110I	CYCGRG	1 cut(s)	1178
BmgT120I	GGNCC	3 cut(s)	562, 785, 971
BmiI	GGNNCC	3 cut(s)	88, 166, 564
BmrFI	CCNGG	1 cut(s)	975
BmsI	GCATC	2 cut(s)	607, 1182
BpiI	GAAGAC	2 cut(s)	452, 642
Bpu10I	CCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	5 cut(s)	377, 678, 726, 919, 1184
Bsa29I	ATCGAT	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	1011
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse1I	ACTGG	1 cut(s)	727
Bse3DI	GCAATG	2 cut(s)	390, 942
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	975
BseCI	ATCGAT	1 cut(s)	674
BseDI	CCNNGG	1 cut(s)	1011
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMI	GCAATG	2 cut(s)	390, 942
BseMII	CTCAG	1 cut(s)	875
BseNI	ACTGG	1 cut(s)	727
BseRI	GAGGAG	3 cut(s)	26, 354, 458
BseSI	GKGCMC	1 cut(s)	1177
BseXI	GCAGC	1 cut(s)	1066
BseYI	CCCAGC	1 cut(s)	395
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	674
BsiHKAI	GWGCWC	3 cut(s)	492, 694, 1177
BsiHKCI	CYCGRG	1 cut(s)	1178
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmAI	GTCTC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	1178
Bsp1286I	GDGCHC	3 cut(s)	492, 694, 1177
Bsp143I	GATC	8 cut(s)	81, 164, 295, 712, 763, 871, 894, 955
BspACI	CCGC	1 cut(s)	379
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	874
BspDI	ATCGAT	1 cut(s)	674
BspFNI	CGCG	1 cut(s)	633
BspLI	GGNNCC	3 cut(s)	88, 166, 564
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	5 cut(s)	159, 172, 758, 902, 963
BspQI	GCTCTTC	3 cut(s)	201, 490, 1147
BsrDI	GCAATG	2 cut(s)	390, 942
BsrI	ACTGG	1 cut(s)	727
BssECI	CCNNGG	1 cut(s)	1011
BssMI	GATC	8 cut(s)	81, 164, 295, 712, 763, 871, 894, 955
Bst2UI	CCWGG	1 cut(s)	975
Bst4CI	ACNGT	1 cut(s)	641
Bst6I	CTCTTC	5 cut(s)	79, 201, 458, 490, 1147
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstDEI	CTNAG	2 cut(s)	621, 861
BstFNI	CGCG	1 cut(s)	633
BstH2I	RGCGCY	2 cut(s)	810, 1080
BstHHI	GCGC	4 cut(s)	633, 809, 949, 1079
BstKTI	GATC	8 cut(s)	84, 167, 298, 715, 766, 874, 897, 958
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	8 cut(s)	81, 164, 295, 712, 763, 871, 894, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	839, 989
BstNI	CCWGG	1 cut(s)	975
BstNSI	RCATGY	2 cut(s)	430, 1118
BstSCI	CCNGG	1 cut(s)	973
BstSLI	GKGCMC	1 cut(s)	1177
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	1 cut(s)	1066
BstV2I	GAAGAC	2 cut(s)	452, 642
BstX2I	RGATCY	3 cut(s)	164, 763, 894
BstYI	RGATCY	3 cut(s)	164, 763, 894
Bsu15I	ATCGAT	1 cut(s)	674
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	229
BsuTUI	ATCGAT	1 cut(s)	674
BtsI	GCAGTG	1 cut(s)	896
BtsIMutI	CAGTG	2 cut(s)	646, 896
BveI	ACCTGC	1 cut(s)	73
CfoI	GCGC	4 cut(s)	633, 809, 949, 1079
Cfr13I	GGNCC	3 cut(s)	562, 785, 971
ClaI	ATCGAT	1 cut(s)	674
DdeI	CTNAG	2 cut(s)	621, 861
DpnI	GATC	8 cut(s)	83, 166, 297, 714, 765, 873, 896, 957
DpnII	GATC	8 cut(s)	81, 164, 295, 712, 763, 871, 894, 955
DriI	GACNNNNNGTC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	227
Eam1104I	CTCTTC	5 cut(s)	79, 201, 458, 490, 1147
Eam1105I	GACNNNNNGTC	1 cut(s)	427
EarI	CTCTTC	5 cut(s)	79, 201, 458, 490, 1147
Ecl136II	GAGCTC	1 cut(s)	692
Eco24I	GRGCYC	1 cut(s)	694
Eco32I	GATATC	1 cut(s)	997
Eco47I	GGWCC	3 cut(s)	562, 785, 971
Eco53kI	GAGCTC	1 cut(s)	692
Eco57I	CTGAAG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	1178
EcoICRI	GAGCTC	1 cut(s)	692
EcoRII	CCWGG	1 cut(s)	973
EcoRV	GATATC	1 cut(s)	997
EcoT38I	GRGCYC	1 cut(s)	694
FalI	AAGNNNNNCTT	4 cut(s)	437, 469, 972, 1004
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	2 cut(s)	45, 312
Fnu4HI	GCNGC	1 cut(s)	1080
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	1 cut(s)	1080
FspBI	CTAG	1 cut(s)	830
GlaI	GCGC	4 cut(s)	632, 808, 948, 1078
GluI	GCNGC	1 cut(s)	1080
GsaI	CCCAGC	1 cut(s)	399
HaeII	RGCGCY	2 cut(s)	810, 1080
HaeIII	GGCC	1 cut(s)	229
HhaI	GCGC	4 cut(s)	633, 809, 949, 1079
Hin6I	GCGC	4 cut(s)	631, 807, 947, 1077
HinP1I	GCGC	4 cut(s)	631, 807, 947, 1077
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	696
HinfI	GANTC	7 cut(s)	221, 387, 448, 746, 1061, 1071, 1130
HphI	GGTGA	5 cut(s)	230, 282, 591, 722, 1241
Hpy166II	GTNNAC	5 cut(s)	18, 46, 60, 313, 1175
Hpy188I	TCNGA	5 cut(s)	86, 100, 433, 562, 1070
Hpy188III	TCNNGA	8 cut(s)	305, 476, 608, 743, 767, 863, 898, 1031
Hpy8I	GTNNAC	5 cut(s)	18, 46, 60, 313, 1175
HpyCH4III	ACNGT	1 cut(s)	641
HpyCH4V	TGCA	5 cut(s)	842, 992, 1057, 1082, 1175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	839, 989
HpyF3I	CTNAG	2 cut(s)	621, 861
HspAI	GCGC	4 cut(s)	631, 807, 947, 1077
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	8 cut(s)	81, 164, 295, 712, 763, 871, 894, 955
LguI	GCTCTTC	3 cut(s)	201, 490, 1147
LmnI	GCTCC	2 cut(s)	86, 544
Lsp1109I	GCAGC	1 cut(s)	1066
LweI	GCATC	2 cut(s)	607, 1182
MaeI	CTAG	1 cut(s)	830
MaeIII	GTNAC	3 cut(s)	502, 736, 818
MalI	GATC	8 cut(s)	83, 166, 297, 714, 765, 873, 896, 957
MboI	GATC	8 cut(s)	81, 164, 295, 712, 763, 871, 894, 955
MflI	RGATCY	3 cut(s)	164, 763, 894
MhlI	GDGCHC	3 cut(s)	492, 694, 1177
MlsI	TGGCCA	1 cut(s)	229
MluCI	AATT	7 cut(s)	142, 283, 509, 922, 1048, 1098, 1245
MluNI	TGGCCA	1 cut(s)	229
MlyI	GAGTC	3 cut(s)	381, 442, 1055
MmeI	TCCRAC	3 cut(s)	106, 142, 572
MnlI	CCTC	9 cut(s)	4, 178, 372, 375, 425, 479, 1006, 1038, 1114
Mox20I	TGGCCA	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	229
MseI	TTAA	6 cut(s)	26, 539, 585, 701, 930, 1218
Msp20I	TGGCCA	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	975
MvaI	CCWGG	1 cut(s)	975
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	2 cut(s)	839, 989
NdeII	GATC	8 cut(s)	81, 164, 295, 712, 763, 871, 894, 955
NlaIV	GGNNCC	3 cut(s)	88, 166, 564
NspI	RCATGY	2 cut(s)	430, 1118
PaeR7I	CTCGAG	1 cut(s)	1178
PaqCI	CACCTGC	1 cut(s)	73
PciI	ACATGT	2 cut(s)	426, 1114
PciSI	GCTCTTC	3 cut(s)	201, 490, 1147
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	4 cut(s)	221, 746, 1071, 1130
PkrI	GCNGC	1 cut(s)	1081
PleI	GAGTC	3 cut(s)	381, 442, 1055
PpsI	GAGTC	3 cut(s)	381, 442, 1055
PscI	ACATGT	2 cut(s)	426, 1114
Psp124BI	GAGCTC	1 cut(s)	694
Psp6I	CCWGG	1 cut(s)	973
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	973
PspN4I	GGNNCC	3 cut(s)	88, 166, 564
PspPI	GGNCC	3 cut(s)	562, 785, 971
PspXI	VCTCGAGB	1 cut(s)	1178
PsuI	RGATCY	3 cut(s)	164, 763, 894
SacI	GAGCTC	1 cut(s)	694
SapI	GCTCTTC	3 cut(s)	201, 490, 1147
SaqAI	TTAA	6 cut(s)	26, 539, 585, 701, 930, 1218
SatI	GCNGC	1 cut(s)	1080
Sau3AI	GATC	8 cut(s)	81, 164, 295, 712, 763, 871, 894, 955
Sau96I	GGNCC	3 cut(s)	562, 785, 971
SchI	GAGTC	3 cut(s)	381, 442, 1055
ScrFI	CCNGG	1 cut(s)	975
SduI	GDGCHC	3 cut(s)	492, 694, 1177
SfaNI	GCATC	2 cut(s)	607, 1182
Sfr274I	CTCGAG	1 cut(s)	1178
SinI	GGWCC	3 cut(s)	562, 785, 971
SlaI	CTCGAG	1 cut(s)	1178
SmlI	CTYRAG	6 cut(s)	356, 693, 741, 898, 1178, 1199
SmoI	CTYRAG	6 cut(s)	356, 693, 741, 898, 1178, 1199
Sse9I	AATT	7 cut(s)	142, 283, 509, 922, 1048, 1098, 1245
SsiI	CCGC	1 cut(s)	379
SspMI	CTAG	1 cut(s)	830
SstI	GAGCTC	1 cut(s)	694
StyD4I	CCNGG	1 cut(s)	973
TaaI	ACNGT	1 cut(s)	641
TaqI	TCGA	6 cut(s)	654, 674, 798, 874, 1137, 1179
TaqII	GACCGA	1 cut(s)	802
TasI	AATT	7 cut(s)	142, 283, 509, 922, 1048, 1098, 1245
TfiI	GAWTC	4 cut(s)	221, 746, 1071, 1130
Tru1I	TTAA	6 cut(s)	26, 539, 585, 701, 930, 1218
Tru9I	TTAA	6 cut(s)	26, 539, 585, 701, 930, 1218
TscAI	CASTG	2 cut(s)	646, 896
TseI	GCWGC	1 cut(s)	1079
TspDTI	ATGAA	3 cut(s)	142, 707, 931
TspGWI	ACGGA	1 cut(s)	557
TspRI	CASTG	2 cut(s)	646, 896
VneI	GTGCAC	1 cut(s)	1173
VpaK11BI	GGWCC	3 cut(s)	562, 785, 971
XapI	RAATTY	4 cut(s)	283, 509, 922, 1048
XceI	RCATGY	2 cut(s)	430, 1118
XhoI	CTCGAG	1 cut(s)	1178
XmiI	GTMKAC	2 cut(s)	45, 312
XspI	CTAG	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.