Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003367

Physical Location & Seq

Genomic Coordinates Forward (+)

23612922 .. 23615844

Gene Structure 2923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0236300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGCGTTGGCGAGTGAATGATCGCAGAACCATTGATGTATGGAAAGATAGGTGGATCCGTAACTCCTTGGATGGGCTCATTCATCCCACTAATACTAGAAACTGCTTTACTCTTGCGGTTTCGGAGATTATTGATTGTGACACAAGAAACTGGAACATCAGCCACATTGAACCTTTCCTTAATGATTCTGATGCTAAAGCTATCAAGGCTATGCCAATTGGAGACCCAAATGAAGATGACAGACTGATTTGGCCGTTCAAAATGGATGGTGACTTCTCTGTTCGGTCATGCTATCGTTGCATTCCACAGCAATGCATAATATTGGGCGTGAAGATTGCTAAGGATGAGATTACCACTCGGGATACTTGCCAAGTCTTCAAGGCCAGAGAAATCAGAAGTGGTGAAATTGTTGCTTTGAAAAGGATACGTATGGATAATGAAAAAGAAGGGGTATGTGTCCGTTCAATTACCATGTGTTTCCTATTACAGCAATTCGGAAAATTAAAGCTTCTGAAGAAGCTTCATCATGAAAATATTATTAAGCTGAAAGAGATTGTAACTTCTGCAGGTCCTGAAAAGAATGATCAAGAGAATCAAGATAGTAAAAAGCTTGAGGGTGGCATCTATATGGTTTCTGAGTATATGGATCATGATTTGACAGGCCTTGCTGATCGTCCTGGATGTTATATGAAGCAGTTGTTAACTGGGCTCCATTACTGTCATGTTAATCAAGTACTTCATCGTGACATGAAAGATAATGAGGGAAAATTGAAGCTAGCAGAATTTGGGCTCGCAAAATCCTTTGCTACCAACCATGATGGGCAGCTTACAAATCGTGTTATTACATTGTGGCATAGGCCCTCAGAGTTGCTGCTTGGAGCTACAAAGTGTGGACGAGCTGTCGACATGTGGTCTGTTGGTTGCATCTTTGCTGAACTTCTGAATGGTTCGCCAATTTTGCAAGGAAGAACTGAACTTACTGAACCTGACCAACTGAACAAGATATTTGAGCTTTGTGGATCGCCTGATGAGAACAACTGGCCTGGTGTTTCAAAATATTATTTTTATAACAATTTCAAGCCACCAAGGCCCCTGAAGCGACGAGTCAGGGAATGTTTCAGACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019509 GO:0019752 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042802 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046522 GO:0050896 GO:0051716 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

APH

Protein Analysis

375

Amino Acids

43.39

Weight (kDa)

8.67

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	123 - 350	1.2e-34	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	164 - 316	4.4e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49820
fragaria_vesca	FvH4_2g05040
malus_domestica	MD10G1098200.v1.1 MD10G1098700.v1.1 MD10G1147300.v1.1
prunus_persica	Prupe.7G233900_v2.0.a1 Prupe.8G136000_v2.0.a1
pyrus_communis	pycom10g08390
rosa_chinensis	RchiOBHm_Chr2g0122061 RchiOBHm_Chr6g0254911 RchiOBHm_Chr6g0254921
rosa_laevigata	RLG00000014878 RLG00000014883
rosa_multiflora	Rmu_sc0000016.1_g000011 Rmu_sc0003880.1_g000001 Rmu_sc0010925.1_g000019
rosa_roxburghii	Rroxscaffold_2G00122040 Rroxscaffold_7G00210480
rosa_rugosa	Rorug02G0236200 Rorug02G0236300 Rorug05G0555300
rosa_samantha	Rh2AG292600 Rh2BG303200 Rh2CG281700 Rh2DG316800 Rh6AG072700 Rh6BG064800 Rh6BG065000 Rh6CG063900 Rh6CG064800 Rh6DG061000 Rh6DG061800
rosa_wichuraiana	Rw0G002700 Rw2G023480 Rw6G006330 Rw6G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1068
Acc36I	ACCTGC	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	903
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	4 cut(s)	49, 62, 654, 1027
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	782
AcuI	CTGAAG	2 cut(s)	533, 1115
AfaI	GTAC	1 cut(s)	735
AfiI	CCNNNNNNNGG	1 cut(s)	72
AflIII	ACRYGT	1 cut(s)	906
AgsI	TTSAA	8 cut(s)	170, 259, 379, 418, 465, 772, 1053, 1078
AhdI	GACNNNNNGTC	2 cut(s)	899, 910
AjnI	CCWGG	2 cut(s)	676, 1042
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	4 cut(s)	49, 62, 654, 1027
AlwNI	CAGNNNCTG	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	357
AoxI	GGCC	6 cut(s)	251, 381, 661, 857, 1040, 1088
ApeKI	GCWGC	2 cut(s)	823, 871
ApoI	RAATTY	1 cut(s)	782
AspS9I	GGNCC	3 cut(s)	569, 858, 1089
AsuHPI	GGTGA	2 cut(s)	281, 413
AsuNHI	GCTAGC	1 cut(s)	775
AvaI	CYCGRG	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	569
BamHI	GGATCC	1 cut(s)	54
BanII	GRGCYC	3 cut(s)	78, 711, 792
BbsI	GAAGAC	1 cut(s)	367
BbvI	GCAGC	2 cut(s)	835, 858
BccI	CCATC	3 cut(s)	65, 260, 812
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	2 cut(s)	678, 1044
BciVI	GTATCC	2 cut(s)	355, 417
BclI	TGATCA	1 cut(s)	583
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	2 cut(s)	96, 776
BfmI	CTRYAG	1 cut(s)	564
BfuAI	ACCTGC	1 cut(s)	557
BfuI	GTATCC	2 cut(s)	355, 417
BglI	GCCNNNNNGGC	1 cut(s)	1087
BisI	GCNGC	2 cut(s)	824, 872
BlsI	GCNGC	2 cut(s)	825, 873
BmcAI	AGTACT	1 cut(s)	735
Bme1390I	CCNGG	2 cut(s)	678, 1044
Bme18I	GGWCC	1 cut(s)	569
BmeRI	GACNNNNNGTC	2 cut(s)	899, 910
BmeT110I	CYCGRG	1 cut(s)	357
BmgT120I	GGNCC	3 cut(s)	569, 858, 1089
BmiI	GGNNCC	3 cut(s)	56, 710, 1091
BmrFI	CCNGG	2 cut(s)	678, 1044
BmrI	ACTGGG	1 cut(s)	714
BmsI	GCATC	3 cut(s)	181, 630, 933
BmtI	GCTAGC	1 cut(s)	779
BmuI	ACTGGG	1 cut(s)	714
BpiI	GAAGAC	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	632
BsaAI	YACGTR	1 cut(s)	428
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	66, 1085
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	3 cut(s)	155, 709, 1043
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	678, 1044
BseDI	CCNNGG	2 cut(s)	66, 1085
BseGI	GGATG	5 cut(s)	76, 82, 271, 349, 686
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	2 cut(s)	627, 876
BseNI	ACTGG	3 cut(s)	155, 709, 1043
BseXI	GCAGC	2 cut(s)	835, 858
BshFI	GGCC	6 cut(s)	253, 383, 663, 859, 1042, 1090
BsiHKCI	CYCGRG	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	6 cut(s)	253, 383, 663, 859, 1042, 1090
Bso31I	GGTCTC	1 cut(s)	216
BsoBI	CYCGRG	1 cut(s)	357
Bsp1286I	GDGCHC	3 cut(s)	78, 711, 792
Bsp143I	GATC	6 cut(s)	19, 54, 583, 646, 670, 1019
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	6 cut(s)	253, 383, 663, 859, 1042, 1090
BspCNI	CTCAG	2 cut(s)	628, 875
BspHI	TCATGA	2 cut(s)	526, 649
BspLI	GGNNCC	3 cut(s)	56, 710, 1091
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	557
BspOI	GCTAGC	1 cut(s)	779
BspPI	GGATC	4 cut(s)	49, 62, 654, 1027
BspTNI	GGTCTC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	155, 709, 1043
BssECI	CCNNGG	2 cut(s)	66, 1085
BssMI	GATC	6 cut(s)	19, 54, 583, 646, 670, 1019
BssT1I	CCWWGG	2 cut(s)	66, 1085
Bst2UI	CCWGG	2 cut(s)	678, 1044
Bst4CI	ACNGT	2 cut(s)	719, 1125
BstBAI	YACGTR	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	777, 792
BstDEI	CTNAG	3 cut(s)	339, 636, 862
BstF5I	GGATG	5 cut(s)	76, 82, 271, 349, 686
BstKTI	GATC	6 cut(s)	22, 57, 586, 649, 673, 1022
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	6 cut(s)	19, 54, 583, 646, 670, 1019
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 297, 958, 1087, 1096
BstNI	CCWGG	2 cut(s)	678, 1044
BstNSI	RCATGY	1 cut(s)	910
BstSCI	CCNGG	2 cut(s)	676, 1042
BstSFI	CTRYAG	1 cut(s)	564
BstSNI	TACGTA	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	835, 858
BstV2I	GAAGAC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BsuI	GTATCC	2 cut(s)	355, 417
BsuRI	GGCC	6 cut(s)	253, 383, 663, 859, 1042, 1090
BtsCI	GGATG	5 cut(s)	76, 82, 271, 349, 686
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	2 cut(s)	777, 792
CaiI	CAGNNNCTG	1 cut(s)	572
CciI	TCATGA	2 cut(s)	526, 649
Cfr13I	GGNCC	3 cut(s)	569, 858, 1089
Csp6I	GTAC	1 cut(s)	734
CviAII	CATG	8 cut(s)	288, 472, 527, 650, 722, 748, 815, 907
CviQI	GTAC	1 cut(s)	734
DdeI	CTNAG	3 cut(s)	339, 636, 862
DpnI	GATC	6 cut(s)	21, 56, 585, 648, 672, 1021
DpnII	GATC	6 cut(s)	19, 54, 583, 646, 670, 1019
DriI	GACNNNNNGTC	2 cut(s)	899, 910
EaeI	YGGCCR	1 cut(s)	251
Eam1105I	GACNNNNNGTC	2 cut(s)	899, 910
Eco105I	TACGTA	1 cut(s)	428
Eco130I	CCWWGG	2 cut(s)	66, 1085
Eco147I	AGGCCT	1 cut(s)	663
Eco24I	GRGCYC	3 cut(s)	78, 711, 792
Eco31I	GGTCTC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	569
Eco57I	CTGAAG	2 cut(s)	533, 1115
Eco88I	CYCGRG	1 cut(s)	357
EcoO109I	RGGNCCY	3 cut(s)	569, 858, 1089
EcoRII	CCWGG	2 cut(s)	676, 1042
EcoT14I	CCWWGG	2 cut(s)	66, 1085
EcoT22I	ATGCAT	1 cut(s)	317
EcoT38I	GRGCYC	3 cut(s)	78, 711, 792
ErhI	CCWWGG	2 cut(s)	66, 1085
FaeI	CATG	8 cut(s)	291, 475, 530, 653, 725, 751, 818, 910
FatI	CATG	8 cut(s)	287, 471, 526, 649, 721, 747, 814, 906
FbaI	TGATCA	1 cut(s)	583
FblI	GTMKAC	1 cut(s)	903
Fnu4HI	GCNGC	2 cut(s)	824, 872
FokI	GGATG	5 cut(s)	69, 83, 278, 356, 693
FriOI	GRGCYC	3 cut(s)	78, 711, 792
Fsp4HI	GCNGC	2 cut(s)	824, 872
FspBI	CTAG	2 cut(s)	96, 776
GluI	GCNGC	2 cut(s)	824, 872
HaeIII	GGCC	6 cut(s)	253, 383, 663, 859, 1042, 1090
Hin1II	CATG	8 cut(s)	291, 475, 530, 653, 725, 751, 818, 910
HincII	GTYRAC	2 cut(s)	702, 904
HindII	GTYRAC	2 cut(s)	702, 904
HindIII	AAGCTT	3 cut(s)	506, 518, 608
HinfI	GANTC	3 cut(s)	185, 592, 1104
HpaI	GTTAAC	1 cut(s)	702
HphI	GGTGA	2 cut(s)	281, 413
Hpy166II	GTNNAC	3 cut(s)	702, 893, 904
Hpy188I	TCNGA	9 cut(s)	124, 190, 395, 497, 513, 637, 865, 942, 1121
Hpy188III	TCNNGA	7 cut(s)	359, 527, 572, 587, 596, 650, 743
Hpy8I	GTNNAC	3 cut(s)	702, 893, 904
Hpy99I	CGWCG	1 cut(s)	1104
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	2 cut(s)	719, 1125
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	5 cut(s)	300, 315, 566, 924, 961
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 297, 958, 1087, 1096
HpyF3I	CTNAG	3 cut(s)	339, 636, 862
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	8 cut(s)	291, 475, 530, 653, 725, 751, 818, 910
Ksp22I	TGATCA	1 cut(s)	583
KspAI	GTTAAC	1 cut(s)	702
Kzo9I	GATC	6 cut(s)	19, 54, 583, 646, 670, 1019
LmnI	GCTCC	2 cut(s)	714, 878
Lsp1109I	GCAGC	2 cut(s)	835, 858
LweI	GCATC	3 cut(s)	181, 630, 933
MaeI	CTAG	2 cut(s)	96, 776
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	5 cut(s)	59, 137, 269, 556, 743
MalI	GATC	6 cut(s)	21, 56, 585, 648, 672, 1021
MboI	GATC	6 cut(s)	19, 54, 583, 646, 670, 1019
MboII	GAAGA	5 cut(s)	245, 343, 367, 526, 978
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	3 cut(s)	78, 711, 792
MluCI	AATT	9 cut(s)	216, 405, 465, 491, 500, 767, 782, 954, 1072
MlyI	GAGTC	1 cut(s)	1113
MnlI	CCTC	3 cut(s)	607, 754, 871
Mph1103I	ATGCAT	1 cut(s)	317
MseI	TTAA	5 cut(s)	180, 503, 540, 701, 726
MslI	CAYNNNNRTG	2 cut(s)	310, 626
MspR9I	CCNGG	2 cut(s)	678, 1044
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	2 cut(s)	678, 1044
MwoI	GCNNNNNNNGC	5 cut(s)	206, 297, 958, 1087, 1096
NdeII	GATC	6 cut(s)	19, 54, 583, 646, 670, 1019
NheI	GCTAGC	1 cut(s)	775
NlaIII	CATG	8 cut(s)	291, 475, 530, 653, 725, 751, 818, 910
NlaIV	GGNNCC	3 cut(s)	56, 710, 1091
NmuCI	GTSAC	3 cut(s)	137, 269, 743
NsiI	ATGCAT	1 cut(s)	317
NspI	RCATGY	1 cut(s)	910
PagI	TCATGA	2 cut(s)	526, 649
PceI	AGGCCT	1 cut(s)	663
PciI	ACATGT	1 cut(s)	906
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	185, 592
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	2 cut(s)	825, 873
PleI	GAGTC	1 cut(s)	1112
PpsI	GAGTC	1 cut(s)	1112
Ppu21I	YACGTR	1 cut(s)	428
PpuMI	RGGWCCY	1 cut(s)	569
PscI	ACATGT	1 cut(s)	906
PsiI	TTATAA	1 cut(s)	1068
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	2 cut(s)	676, 1042
PspGI	CCWGG	2 cut(s)	676, 1042
PspN4I	GGNNCC	3 cut(s)	56, 710, 1091
PspPI	GGNCC	3 cut(s)	569, 858, 1089
PspPPI	RGGWCCY	1 cut(s)	569
PsrI	GAACNNNNNNTAC	2 cut(s)	961, 993
PstI	CTGCAG	1 cut(s)	568
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	1 cut(s)	735
RsaNI	GTAC	1 cut(s)	734
RseI	CAYNNNNRTG	2 cut(s)	310, 626
SalI	GTCGAC	1 cut(s)	902
SaqAI	TTAA	5 cut(s)	180, 503, 540, 701, 726
SatI	GCNGC	2 cut(s)	824, 872
Sau3AI	GATC	6 cut(s)	19, 54, 583, 646, 670, 1019
Sau96I	GGNCC	3 cut(s)	569, 858, 1089
ScaI	AGTACT	1 cut(s)	735
SchI	GAGTC	1 cut(s)	1113
ScrFI	CCNGG	2 cut(s)	678, 1044
SduI	GDGCHC	3 cut(s)	78, 711, 792
SfaNI	GCATC	3 cut(s)	181, 630, 933
SfcI	CTRYAG	1 cut(s)	564
SinI	GGWCC	1 cut(s)	569
SmiMI	CAYNNNNRTG	2 cut(s)	310, 626
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
SnaBI	TACGTA	1 cut(s)	428
Sse9I	AATT	9 cut(s)	216, 405, 465, 491, 500, 767, 782, 954, 1072
SseBI	AGGCCT	1 cut(s)	663
SsiI	CCGC	1 cut(s)	116
SspI	AATATT	3 cut(s)	321, 535, 1058
SspMI	CTAG	2 cut(s)	96, 776
StuI	AGGCCT	1 cut(s)	663
StyD4I	CCNGG	2 cut(s)	676, 1042
StyI	CCWWGG	2 cut(s)	66, 1085
TaaI	ACNGT	2 cut(s)	719, 1125
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	1 cut(s)	903
TaqII	GACCGA	1 cut(s)	273
TasI	AATT	9 cut(s)	216, 405, 465, 491, 500, 767, 782, 954, 1072
TatI	WGTACW	1 cut(s)	733
TfiI	GAWTC	2 cut(s)	185, 592
Tru1I	TTAA	5 cut(s)	180, 503, 540, 701, 726
Tru9I	TTAA	5 cut(s)	180, 503, 540, 701, 726
TseFI	GTSAC	3 cut(s)	137, 269, 743
TseI	GCWGC	2 cut(s)	823, 871
Tsp45I	GTSAC	3 cut(s)	137, 269, 743
TspDTI	ATGAA	8 cut(s)	71, 246, 453, 512, 543, 704, 728, 764
TspGWI	ACGGA	2 cut(s)	47, 449
VpaK11BI	GGWCC	1 cut(s)	569
XapI	RAATTY	1 cut(s)	782
XceI	RCATGY	1 cut(s)	910
XmiI	GTMKAC	1 cut(s)	903
XspI	CTAG	2 cut(s)	96, 776
ZrmI	AGTACT	1 cut(s)	735
Zsp2I	ATGCAT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.