Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003367

Physical Location & Seq

Genomic Coordinates Reverse (-)

4088936 .. 4094306

Gene Structure 5371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGCCTTCTCCGAGTTCAAGCCACTAGACGACAAGTCGCTCGTAGAGTACATAAAGGCCACACCCTCCCTCTCTTCCAAGCTCAAGGACCACCTGGACAACTTGACCATCAAGGAAGTCGGCGACGGCAATCTCAATTTCGTCTTCATCGTCGTTGGCTCTCATGGCTCTTTCGTCATCAAACAGGCTCTTCCATATATACGTTGTATAGGTGAGTCATGGCCGATGACGAAGGAAAGAGCTTATTTTGAGGCATTGGCACTGAGAGAGCATGGTCGTTTGAGTCCTGATCATGTTCCTGCAGTTTATCATTTTGATCGGACCATGTCTTTGATTGGCATGCACTATTTGGAACCTCCGCATATTATACTGAGAAAGGGATTGATTGCTGGAATTGAGTACCCTTTGTTAGCTGACCACATGTCAGACTATATGGCAAGGACTCTGTTCTACACTTCGCTCCTTTATCATAATACTACTGACCACAAGAAAGCTGTTGCGGAATTTTGTGGAAACGTGGAGCTATGTAGGCTCACTGAGCAAGTTGTTTTCTCTGACCCTTACAAAGTATCTGAATATAACCGCTGGACTACTCCTTATCTTGATTCTGATGCTGAGGCTGTGCGAGAGGACAATGCTTTGAAGCTTGAAGTTGCTGAATTGAAATCTATGTTCTGTGAGAGAGCCCAAGCCCTCATACATGGAGATCTTCACACTGGTTCTGTGATGGTGACTCCTGATTCAACTCAAGTTATAGATCCGGAATTTGCATTTTATGGACCAATAGGTTTTGACATTGGGGCTTTTCTGGGAAACTTGATGTTGGCTTTCTTTGCACAAGATGGGCATGCTGATGAACAAAATGATCGAAAAGCATACAAGGCTTGGATTTTGAGGATAATTCAAAACACATGGAACCTTTTCCACAGAAAGTTCATTGCACTATGGGAGGCAAACAAAGATACTGGTGATGCGTATCTTCCTGCAATCTATAACACCTCTGAGCTTCAACAGCTTGTACAAGACAAATTTATTAAAGATTTGCTTCATGACACCCTTGGATTTGGTGCTGCGAAAATGATAAGGAGAATTGTTGGTGTGGCACATGTTGAAGATTTTGAATCAATCACTGATGCTAGCAAGAGAGCGGGTTGTGAGCGGCGGGCTCTTGAGTTTGCAAAGCTGATTCTCAAGGAGAGGAGAAAATTTCAAAACATTGGGGAAGTTGTTTCAGCCATTCAACAAATCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019509 GO:0019752 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042802 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046522 GO:0050896 GO:0051716 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

APH

Protein Analysis

418

Amino Acids

47.48

Weight (kDa)

5.9

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APH	PF01636	36 - 277	9.5e-13	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49820
fragaria_vesca	FvH4_2g05040
malus_domestica	MD10G1098200.v1.1 MD10G1098700.v1.1 MD10G1147300.v1.1
prunus_persica	Prupe.7G233900_v2.0.a1 Prupe.8G136000_v2.0.a1
pyrus_communis	pycom10g08390
rosa_chinensis	RchiOBHm_Chr2g0122061 RchiOBHm_Chr6g0254911 RchiOBHm_Chr6g0254921
rosa_laevigata	RLG00000014878 RLG00000014883
rosa_multiflora	Rmu_sc0000016.1_g000011 Rmu_sc0003880.1_g000001 Rmu_sc0010925.1_g000019
rosa_roxburghii	Rroxscaffold_2G00122040 Rroxscaffold_7G00210480
rosa_rugosa	Rorug02G0236200 Rorug02G0236300 Rorug05G0555300
rosa_samantha	Rh2AG292600 Rh2BG303200 Rh2CG281700 Rh2DG316800 Rh6AG072700 Rh6BG064800 Rh6BG065000 Rh6CG063900 Rh6CG064800 Rh6DG061000 Rh6DG061800
rosa_wichuraiana	Rw0G002700 Rw2G023480 Rw6G006330 Rw6G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	1148, 1159
AccIII	TCCGGA	1 cut(s)	760
AciI	CCGC	6 cut(s)	359, 500, 583, 1148, 1159, 1162
AclWI	GGATC	1 cut(s)	752
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	4 cut(s)	503, 764, 1028, 1205
AfaI	GTAC	3 cut(s)	50, 401, 1020
AflIII	ACRYGT	2 cut(s)	420, 1105
AhdI	GACNNNNNGTC	2 cut(s)	34, 421
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	9 cut(s)	82, 242, 413, 494, 523, 646, 1006, 1015, 1183
AluI	AGCT	9 cut(s)	82, 242, 413, 494, 523, 646, 1006, 1015, 1183
AlwI	GGATC	1 cut(s)	752
Aor13HI	TCCGGA	1 cut(s)	760
AoxI	GGCC	3 cut(s)	3, 57, 221
ApeKI	GCWGC	1 cut(s)	1070
ApoI	RAATTY	4 cut(s)	503, 764, 1028, 1205
ArsI	GACNNNNNNTTYG	2 cut(s)	313, 345
Asp700I	GAANNNNTTC	1 cut(s)	920
AspS9I	GGNCC	3 cut(s)	88, 321, 779
AsuHPI	GGTGA	3 cut(s)	224, 742, 980
AsuNHI	GCTAGC	1 cut(s)	1136
AvaII	GGWCC	3 cut(s)	88, 321, 779
BanII	GRGCYC	2 cut(s)	688, 1168
BbsI	GAAGAC	1 cut(s)	136
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	1 cut(s)	1057
BccI	CCATC	3 cut(s)	116, 721, 836
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	95
BclI	TGATCA	1 cut(s)	289
BfaI	CTAG	2 cut(s)	26, 1137
BfmI	CTRYAG	1 cut(s)	300
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	2 cut(s)	1071, 1160
BlsI	GCNGC	2 cut(s)	1072, 1161
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	3 cut(s)	88, 321, 779
BmeRI	GACNNNNNGTC	2 cut(s)	34, 421
BmgT120I	GGNCC	3 cut(s)	88, 321, 779
BmiI	GGNNCC	2 cut(s)	354, 917
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	3 cut(s)	601, 961, 1123
BmtI	GCTAGC	1 cut(s)	1140
BpiI	GAAGAC	1 cut(s)	136
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	4 cut(s)	68, 732, 1175, 1190
BsaBI	GATNNNNATC	1 cut(s)	975
BsaJI	CCNNGG	1 cut(s)	1057
BsaWI	WCCGGW	1 cut(s)	760
Bse1I	ACTGG	3 cut(s)	721, 970, 1249
Bse3DI	GCAATG	1 cut(s)	936
Bse8I	GATNNNNATC	1 cut(s)	975
BseAI	TCCGGA	1 cut(s)	760
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	1057
BseJI	GATNNNNATC	1 cut(s)	975
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	5 cut(s)	254, 362, 528, 606, 993
BseNI	ACTGG	3 cut(s)	721, 970, 1249
BseRI	GAGGAG	1 cut(s)	1213
BseXI	GCAGC	1 cut(s)	1057
BshFI	GGCC	3 cut(s)	5, 59, 223
BsiSI	CCGG	1 cut(s)	761
BsnI	GGCC	3 cut(s)	5, 59, 223
Bsp1286I	GDGCHC	2 cut(s)	688, 1168
Bsp13I	TCCGGA	1 cut(s)	760
Bsp1407I	TGTACA	1 cut(s)	1018
Bsp143I	GATC	5 cut(s)	289, 316, 706, 757, 865
BspACI	CCGC	6 cut(s)	359, 500, 583, 1148, 1159, 1162
BspANI	GGCC	3 cut(s)	5, 59, 223
BspCNI	CTCAG	5 cut(s)	255, 363, 529, 607, 994
BspEI	TCCGGA	1 cut(s)	760
BspHI	TCATGA	1 cut(s)	1048
BspLI	GGNNCC	2 cut(s)	354, 917
BspMAI	CTGCAG	1 cut(s)	304
BspOI	GCTAGC	1 cut(s)	1140
BspPI	GGATC	1 cut(s)	752
BspQI	GCTCTTC	1 cut(s)	195
BsrBI	CCGCTC	2 cut(s)	1148, 1159
BsrDI	GCAATG	1 cut(s)	936
BsrGI	TGTACA	1 cut(s)	1018
BsrI	ACTGG	3 cut(s)	721, 970, 1249
BssECI	CCNNGG	1 cut(s)	1057
BssMI	GATC	5 cut(s)	289, 316, 706, 757, 865
BssT1I	CCWWGG	1 cut(s)	1057
Bst2UI	CCWGG	1 cut(s)	95
Bst6I	CTCTTC	2 cut(s)	79, 195
BstAUI	TGTACA	1 cut(s)	1018
BstC8I	GCNNGC	4 cut(s)	341, 849, 1138, 1164
BstDEI	CTNAG	5 cut(s)	263, 371, 537, 615, 1002
BstKTI	GATC	5 cut(s)	292, 319, 709, 760, 868
BstMBI	GATC	5 cut(s)	289, 316, 706, 757, 865
BstMWI	GCNNNNNNNGC	6 cut(s)	165, 529, 538, 833, 881, 1012
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	4 cut(s)	343, 424, 851, 1109
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	1057
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	2 cut(s)	706, 757
BstYI	RGATCY	2 cut(s)	706, 757
BsuRI	GGCC	3 cut(s)	5, 59, 223
BtsIMutI	CAGTG	4 cut(s)	260, 534, 714, 1128
Cac8I	GCNNGC	4 cut(s)	341, 849, 1138, 1164
CciI	TCATGA	1 cut(s)	1048
Cfr13I	GGNCC	3 cut(s)	88, 321, 779
Csp6I	GTAC	3 cut(s)	49, 400, 1019
CviQI	GTAC	3 cut(s)	49, 400, 1019
DdeI	CTNAG	5 cut(s)	263, 371, 537, 615, 1002
DpnI	GATC	5 cut(s)	291, 318, 708, 759, 867
DpnII	GATC	5 cut(s)	289, 316, 706, 757, 865
DriI	GACNNNNNGTC	2 cut(s)	34, 421
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	79, 195
Eam1105I	GACNNNNNGTC	2 cut(s)	34, 421
EarI	CTCTTC	2 cut(s)	79, 195
Eco130I	CCWWGG	1 cut(s)	1057
Eco24I	GRGCYC	2 cut(s)	688, 1168
Eco47I	GGWCC	3 cut(s)	88, 321, 779
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	1057
EcoT38I	GRGCYC	2 cut(s)	688, 1168
ErhI	CCWWGG	1 cut(s)	1057
FalI	AAGNNNNNCTT	2 cut(s)	1029, 1061
FauI	CCCGC	2 cut(s)	1141, 1155
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	1071, 1160
FriOI	GRGCYC	2 cut(s)	688, 1168
Fsp4HI	GCNGC	2 cut(s)	1071, 1160
FspBI	CTAG	2 cut(s)	26, 1137
GluI	GCNGC	2 cut(s)	1071, 1160
HaeIII	GGCC	3 cut(s)	5, 59, 223
HapII	CCGG	1 cut(s)	761
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	8 cut(s)	215, 283, 442, 605, 733, 740, 1121, 1186
HpaII	CCGG	1 cut(s)	761
HphI	GGTGA	3 cut(s)	224, 742, 980
Hpy188I	TCNGA	7 cut(s)	13, 321, 427, 556, 574, 610, 1003
Hpy188III	TCNNGA	6 cut(s)	287, 602, 737, 761, 1049, 1169
Hpy99I	CGWCG	2 cut(s)	128, 155
HpyAV	CCTTC	2 cut(s)	16, 226
HpyCH4IV	ACGT	2 cut(s)	202, 516
HpyCH4V	TGCA	7 cut(s)	302, 343, 770, 836, 941, 986, 1178
HpyF10VI	GCNNNNNNNGC	6 cut(s)	165, 529, 538, 833, 881, 1012
HpyF3I	CTNAG	5 cut(s)	263, 371, 537, 615, 1002
HpySE526I	ACGT	2 cut(s)	202, 516
Kpn2I	TCCGGA	1 cut(s)	760
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	5 cut(s)	289, 316, 706, 757, 865
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	465, 520
Lsp1109I	GCAGC	1 cut(s)	1057
LweI	GCATC	3 cut(s)	601, 961, 1123
MaeI	CTAG	2 cut(s)	26, 1137
MaeII	ACGT	2 cut(s)	202, 516
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	5 cut(s)	291, 318, 708, 759, 867
MbiI	CCGCTC	2 cut(s)	1148, 1159
MboI	GATC	5 cut(s)	289, 316, 706, 757, 865
MboII	GAAGA	6 cut(s)	66, 136, 182, 701, 971, 1124
MflI	RGATCY	2 cut(s)	706, 757
MhlI	GDGCHC	2 cut(s)	688, 1168
MluCI	AATT	9 cut(s)	136, 393, 503, 659, 764, 900, 1028, 1089, 1205
MlyI	GAGTC	4 cut(s)	224, 292, 436, 727
MroI	TCCGGA	1 cut(s)	760
MroXI	GAANNNNTTC	1 cut(s)	920
MseI	TTAA	1 cut(s)	1035
MslI	CAYNNNNRTG	1 cut(s)	852
MspA1I	CMGCKG	1 cut(s)	585
MspI	CCGG	1 cut(s)	761
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	6 cut(s)	165, 529, 538, 833, 881, 1012
NdeII	GATC	5 cut(s)	289, 316, 706, 757, 865
NheI	GCTAGC	1 cut(s)	1136
NlaIV	GGNNCC	2 cut(s)	354, 917
NmuCI	GTSAC	1 cut(s)	730
NspI	RCATGY	4 cut(s)	343, 424, 851, 1109
PaeI	GCATGC	2 cut(s)	343, 851
PagI	TCATGA	1 cut(s)	1048
PciI	ACATGT	2 cut(s)	420, 1105
PciSI	GCTCTTC	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	920
PfeI	GAWTC	4 cut(s)	605, 740, 1121, 1186
PflFI	GACNNNGTC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	1072, 1161
PleI	GAGTC	4 cut(s)	223, 291, 436, 727
PpsI	GAGTC	4 cut(s)	223, 291, 436, 727
PscI	ACATGT	2 cut(s)	420, 1105
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	354, 917
PspPI	GGNCC	3 cut(s)	88, 321, 779
PstI	CTGCAG	1 cut(s)	304
PsuI	RGATCY	2 cut(s)	706, 757
PsyI	GACNNNGTC	1 cut(s)	325
RsaI	GTAC	3 cut(s)	50, 401, 1020
RsaNI	GTAC	3 cut(s)	49, 400, 1019
RseI	CAYNNNNRTG	1 cut(s)	852
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	1035
SatI	GCNGC	2 cut(s)	1071, 1160
Sau3AI	GATC	5 cut(s)	289, 316, 706, 757, 865
Sau96I	GGNCC	3 cut(s)	88, 321, 779
SchI	GAGTC	4 cut(s)	224, 292, 436, 727
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	2 cut(s)	688, 1168
SfaNI	GCATC	3 cut(s)	601, 961, 1123
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	3 cut(s)	88, 321, 779
SmiMI	CAYNNNNRTG	1 cut(s)	852
SmlI	CTYRAG	4 cut(s)	83, 747, 1169, 1190
SmoI	CTYRAG	4 cut(s)	83, 747, 1169, 1190
SphI	GCATGC	2 cut(s)	343, 851
Sse9I	AATT	9 cut(s)	136, 393, 503, 659, 764, 900, 1028, 1089, 1205
SsiI	CCGC	6 cut(s)	359, 500, 583, 1148, 1159, 1162
SspMI	CTAG	2 cut(s)	26, 1137
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	1057
TaiI	ACGT	2 cut(s)	205, 519
TaqI	TCGA	1 cut(s)	868
TasI	AATT	9 cut(s)	136, 393, 503, 659, 764, 900, 1028, 1089, 1205
TatI	WGTACW	2 cut(s)	48, 1018
TauI	GCSGC	1 cut(s)	1162
TfiI	GAWTC	4 cut(s)	605, 740, 1121, 1186
Tru1I	TTAA	1 cut(s)	1035
Tru9I	TTAA	1 cut(s)	1035
TscAI	CASTG	4 cut(s)	267, 541, 721, 1135
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	1 cut(s)	1070
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	4 cut(s)	136, 870, 925, 1037
TspRI	CASTG	4 cut(s)	267, 541, 721, 1135
Tth111I	GACNNNGTC	1 cut(s)	325
VpaK11BI	GGWCC	3 cut(s)	88, 321, 779
XapI	RAATTY	4 cut(s)	503, 764, 1028, 1205
XceI	RCATGY	4 cut(s)	343, 424, 851, 1109
XmnI	GAANNNNTTC	1 cut(s)	920
XspI	CTAG	2 cut(s)	26, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.