Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00085

Orthogroup ID

OG0003367

Physical Location & Seq

Genomic Coordinates Reverse (-)

1093 .. 2840

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCCTTCTCCGAGTACCAGCAACTGAACGACAAGTTGCTCCTAGACTACATAAAGGCCACACCTTCCCTCTCTTCCAAGCTCAAAGACCACCTCGACAACTTGACCATCAAGGAAGTCGGCGATGGCAATCTCAATTTTGTCTTCATCGTCGTTGGTTCTCATGGCTCTTTTGTCATCAAGCAGGCTCTTCCATACATACGTTGTATAGGTGAGTCATGGCCGAAGACAAAGGAAAGAGCTTATTTTGAGACATTGGCACTGAGAGAGCATGGTCGTTTGAGTCCTGATCATGTGCCTGAAGTTTATCATTTTGATCGGACCATGTCTTTGATTGGCATGCGCTATTTGGAACCACCCCATATTGTACTGCGAAAGGGACTGATTGCTGGCATTAAGTACCCTTTGCTTGCTGAACACATGTCAGACTATATGGCAAGGACTCTGTTCTACACTTCTCTCCTTTATCATAATACTACCGACCACAGGAAAGCTGGCACACCGAGCAAGTTGTTTTCTGACCCTTACAAAGTATCTGAATATAACCACTGGACTTCTCCTTATCTTGATTCTGATGCTAAGGCTGTGCGAGAGGACAATGCTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTTTGTTCTGTGAGAGAGCCCAAGCCCTAATACATGGAGATCTTCACACTGGTTCTGTAATGGTGACTCCTGATTCAACTCATGTTATAGATCCAGAATTTGCATTTTATGGACCAATAGGTTTTGATACTGGAGCTTTTCTGGGAAACTTGATTTTGGCTTTCTTTGCACAAGATGGGCATGCTGATGAACAAAATGATCGAAAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019509 GO:0019752 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042802 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046522 GO:0050896 GO:0051716 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

APH

Protein Analysis

279

Amino Acids

31.64

Weight (kDa)

6.04

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APH	PF01636	36 - 258	9.9e-12	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49820
fragaria_vesca	FvH4_2g05040
malus_domestica	MD10G1098200.v1.1 MD10G1098700.v1.1 MD10G1147300.v1.1
prunus_persica	Prupe.7G233900_v2.0.a1 Prupe.8G136000_v2.0.a1
pyrus_communis	pycom10g08390
rosa_chinensis	RchiOBHm_Chr2g0122061 RchiOBHm_Chr6g0254911 RchiOBHm_Chr6g0254921
rosa_laevigata	RLG00000014878 RLG00000014883
rosa_multiflora	Rmu_sc0000016.1_g000011 Rmu_sc0003880.1_g000001 Rmu_sc0010925.1_g000019
rosa_roxburghii	Rroxscaffold_2G00122040 Rroxscaffold_7G00210480
rosa_rugosa	Rorug02G0236200 Rorug02G0236300 Rorug05G0555300
rosa_samantha	Rh2AG292600 Rh2BG303200 Rh2CG281700 Rh2DG316800 Rh6AG072700 Rh6BG064800 Rh6BG065000 Rh6CG063900 Rh6CG064800 Rh6DG061000 Rh6DG061800
rosa_wichuraiana	Rw0G002700 Rw2G023480 Rw6G006330 Rw6G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	716
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	17, 369, 401
AfiI	CCNNNNNNNGG	1 cut(s)	486
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	4 cut(s)	607, 614, 628, 708
AluBI	AGCT	5 cut(s)	82, 242, 494, 610, 767
AluI	AGCT	5 cut(s)	82, 242, 494, 610, 767
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	716
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	3 cut(s)	3, 57, 221
ApoI	RAATTY	1 cut(s)	728
ArsI	GACNNNNNNTTYG	2 cut(s)	313, 345
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	321, 743
AsuHPI	GGTGA	2 cut(s)	224, 706
AvaII	GGWCC	2 cut(s)	321, 743
BanII	GRGCYC	1 cut(s)	652
BbsI	GAAGAC	2 cut(s)	136, 233
BccI	CCATC	3 cut(s)	116, 119, 800
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	44
BglII	AGATCT	1 cut(s)	670
Bme18I	GGWCC	2 cut(s)	321, 743
BmgT120I	GGNCC	2 cut(s)	321, 743
BmiI	GGNNCC	1 cut(s)	354
BmsI	GCATC	1 cut(s)	565
BpiI	GAAGAC	2 cut(s)	136, 233
BpmI	CTGGAG	1 cut(s)	783
Bpu10I	CCTNAGC	1 cut(s)	579
BsaBI	GATNNNNATC	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse1I	ACTGG	3 cut(s)	554, 685, 766
Bse8I	GATNNNNATC	1 cut(s)	129
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseMII	CTCAG	2 cut(s)	254, 612
BseNI	ACTGG	3 cut(s)	554, 685, 766
BshFI	GGCC	3 cut(s)	5, 59, 223
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	3 cut(s)	5, 59, 223
Bsp1286I	GDGCHC	1 cut(s)	652
Bsp143I	GATC	5 cut(s)	289, 316, 670, 721, 829
BspANI	GGCC	3 cut(s)	5, 59, 223
BspCNI	CTCAG	2 cut(s)	255, 613
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	716
BspQI	GCTCTTC	1 cut(s)	195
BsrI	ACTGG	3 cut(s)	554, 685, 766
BssMI	GATC	5 cut(s)	289, 316, 670, 721, 829
Bst6I	CTCTTC	2 cut(s)	79, 195
BstC8I	GCNNGC	6 cut(s)	186, 341, 391, 411, 496, 813
BstDEI	CTNAG	3 cut(s)	263, 579, 621
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	5 cut(s)	292, 319, 673, 724, 832
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	5 cut(s)	289, 316, 670, 721, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	504, 797
BstNSI	RCATGY	3 cut(s)	343, 424, 815
BstV2I	GAAGAC	2 cut(s)	136, 233
BstX2I	RGATCY	2 cut(s)	670, 721
BstYI	RGATCY	2 cut(s)	670, 721
BsuRI	GGCC	3 cut(s)	5, 59, 223
BtgZI	GCGATG	1 cut(s)	138
BtsIMutI	CAGTG	3 cut(s)	260, 547, 678
Cac8I	GCNNGC	6 cut(s)	186, 341, 391, 411, 496, 813
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	321, 743
Csp6I	GTAC	3 cut(s)	16, 368, 400
CviQI	GTAC	3 cut(s)	16, 368, 400
DdeI	CTNAG	3 cut(s)	263, 579, 621
DpnI	GATC	5 cut(s)	291, 318, 672, 723, 831
DpnII	GATC	5 cut(s)	289, 316, 670, 721, 829
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	79, 195
EarI	CTCTTC	2 cut(s)	79, 195
Eco24I	GRGCYC	1 cut(s)	652
Eco47I	GGWCC	2 cut(s)	321, 743
Eco57I	CTGAAG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	652
FaqI	GGGAC	1 cut(s)	393
FbaI	TGATCA	1 cut(s)	289
FriOI	GRGCYC	1 cut(s)	652
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	1 cut(s)	344
GsuI	CTGGAG	1 cut(s)	783
HaeIII	GGCC	3 cut(s)	5, 59, 223
HhaI	GCGC	1 cut(s)	345
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	6 cut(s)	215, 283, 442, 569, 697, 704
HphI	GGTGA	2 cut(s)	224, 706
Hpy188I	TCNGA	6 cut(s)	13, 321, 427, 520, 538, 574
Hpy188III	TCNNGA	4 cut(s)	287, 566, 701, 725
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	16, 75
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	734, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	504, 797
HpyF3I	CTNAG	3 cut(s)	263, 579, 621
HpySE526I	ACGT	1 cut(s)	202
HspAI	GCGC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	5 cut(s)	289, 316, 670, 721, 829
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	45, 764
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	694
MalI	GATC	5 cut(s)	291, 318, 672, 723, 831
MboI	GATC	5 cut(s)	289, 316, 670, 721, 829
MboII	GAAGA	5 cut(s)	66, 136, 182, 238, 665
MflI	RGATCY	2 cut(s)	670, 721
MhlI	GDGCHC	1 cut(s)	652
MluCI	AATT	2 cut(s)	136, 728
MlyI	GAGTC	4 cut(s)	224, 292, 436, 691
MnlI	CCTC	3 cut(s)	80, 104, 586
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	816
MwoI	GCNNNNNNNGC	2 cut(s)	504, 797
NdeII	GATC	5 cut(s)	289, 316, 670, 721, 829
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	694
NspI	RCATGY	3 cut(s)	343, 424, 815
PaeI	GCATGC	2 cut(s)	343, 815
PciI	ACATGT	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	569, 704
PflFI	GACNNNGTC	1 cut(s)	325
PleI	GAGTC	4 cut(s)	223, 291, 436, 691
PpsI	GAGTC	4 cut(s)	223, 291, 436, 691
PscI	ACATGT	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	321, 743
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	670, 721
PsyI	GACNNNGTC	1 cut(s)	325
RsaI	GTAC	3 cut(s)	17, 369, 401
RsaNI	GTAC	3 cut(s)	16, 368, 400
RseI	CAYNNNNRTG	1 cut(s)	816
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	396
Sau3AI	GATC	5 cut(s)	289, 316, 670, 721, 829
Sau96I	GGNCC	2 cut(s)	321, 743
SchI	GAGTC	4 cut(s)	224, 292, 436, 691
SduI	GDGCHC	1 cut(s)	652
SfaNI	GCATC	1 cut(s)	565
SinI	GGWCC	2 cut(s)	321, 743
SmiMI	CAYNNNNRTG	1 cut(s)	816
SphI	GCATGC	2 cut(s)	343, 815
Sse9I	AATT	2 cut(s)	136, 728
SspMI	CTAG	1 cut(s)	44
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	96, 832
TasI	AATT	2 cut(s)	136, 728
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	2 cut(s)	569, 704
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	3 cut(s)	267, 554, 685
TseFI	GTSAC	1 cut(s)	694
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	2 cut(s)	136, 834
TspRI	CASTG	3 cut(s)	267, 554, 685
Tth111I	GACNNNGTC	1 cut(s)	325
VpaK11BI	GGWCC	2 cut(s)	321, 743
XapI	RAATTY	1 cut(s)	728
XceI	RCATGY	3 cut(s)	343, 424, 815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	491
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.