Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003367

Physical Location & Seq

Genomic Coordinates Reverse (-)

34234558 .. 34238927

Gene Structure 4370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G023480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGCCTTCTCCGAGTTCCAGCCATTGAACGACAAGTCGCTTGTAGATTACATAAAGGCCACACCTTCCCTCTCTTCCAAGCTCAAGGATCACCTAGACAACTTGACCATCAAGGAAGTCGGCGATGGCAATCTCAATTTCGTCTTCATCGTTGTTGGTTCTCATGGCTCTTTTGTCATCAAGCAGGCTCTTCCTTACATACGTTGTATAGGTGAGTCATGGCCGATGACAAAGGAAAGAGCTTATTTTGAGGCTTTGGCATTGAGAGAGCATGGTTGTTTGAGTCCTGATCATGTGCCTGAAGTTTATCATTTTGATCGGACTATGTCTTTGATTGGCATGCGCCATTTGGAACCGCCACATATTATACTGCGAAAGGGATTGATTGCTGGAATTGAGTACCCTTTGCTGGCTGACCACATGTCAGACTATATGGCAAGGACTCTGTTCTATACTTCTCTCCTTTATCGTAATACTATCGACCACAAGAAAGCTGTTGCTGAATTTTGTGGAAATGTGGAGTTATGCAGGCTCACTGAGCAAGTTGTTTTCTCTGACCCTTACAAAGTATCTGAATATAACCGCTGGACTTCTCCTTATCTTGATTCTGATGCTGAGCTGTTCTGTGAGAGAGCCCAAGCCCTAATACATGGGGATCTTCACACTGGTTCTGTAATGGTGACTCCTGATTCAACTCAAGTTATAGATCCAGAATTTGCATTTTATGGACCAATAGGTTTTGATATTGGAGCTTTTCTGGGAAACTTGATTTTGGCTTTCTTTGCACAAGATGGGCATGCTGATGAACAAAATGATCGAAAAGCATACAAGGCTTGGATTTTGAGGATAATTCAAAATACATGGAACCTTTTTCACAGAAAATTTATTGCACTATGGGATGCAAACAAAGATGCTGGTGACGCGTATCTTCCTGCAATTTATAACAACTCTGAGCTTCAACAGCTTGTACAAGACAAATATATTAAAGAATTGCTTCATGACACCCTTGGATTTGGTGCTGCGAAAATGATAAGGAGAATTGTTGGTGTGGCACATGTCGAAGATTTTGAATCAATCACTGATGCTAGCAAGAGAGCATGCTGTGAGCGACGGGCACTGGAGTTTGCAAAGCTGATTCTTAAGGAGAGGAGAAAATTTCAGAACATTGAAGAAGTTGTTTCATCTGTTCAACAAATCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019509 GO:0019752 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042802 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046522 GO:0050896 GO:0051716 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

APH

Protein Analysis

400

Amino Acids

45.69

Weight (kDa)

5.85

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APH	PF01636	37 - 255	5.4e-09	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49820
fragaria_vesca	FvH4_2g05040
malus_domestica	MD10G1098200.v1.1 MD10G1098700.v1.1 MD10G1147300.v1.1
prunus_persica	Prupe.7G233900_v2.0.a1 Prupe.8G136000_v2.0.a1
pyrus_communis	pycom10g08390
rosa_chinensis	RchiOBHm_Chr2g0122061 RchiOBHm_Chr6g0254911 RchiOBHm_Chr6g0254921
rosa_laevigata	RLG00000014878 RLG00000014883
rosa_multiflora	Rmu_sc0000016.1_g000011 Rmu_sc0003880.1_g000001 Rmu_sc0010925.1_g000019
rosa_roxburghii	Rroxscaffold_2G00122040 Rroxscaffold_7G00210480
rosa_rugosa	Rorug02G0236200 Rorug02G0236300 Rorug05G0555300
rosa_samantha	Rh2AG292600 Rh2BG303200 Rh2CG281700 Rh2DG316800 Rh6AG072700 Rh6BG064800 Rh6BG065000 Rh6CG063900 Rh6CG064800 Rh6DG061000 Rh6DG061800
rosa_wichuraiana	Rw0G002700 Rw2G023480 Rw6G006330 Rw6G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	942
AccII	CGCG	1 cut(s)	923
AciI	CCGC	2 cut(s)	356, 583
AclWI	GGATC	3 cut(s)	96, 663, 701
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	4 cut(s)	503, 713, 881, 1154
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	401, 969
AfiI	CCNNNNNNNGG	1 cut(s)	409
AflII	CTTAAG	1 cut(s)	1139
AflIII	ACRYGT	3 cut(s)	420, 921, 1054
AgsI	TTSAA	7 cut(s)	28, 693, 854, 959, 1070, 1169, 1190
AhdI	GACNNNNNGTC	1 cut(s)	421
AluBI	AGCT	8 cut(s)	82, 242, 494, 619, 752, 955, 964, 1132
AluI	AGCT	8 cut(s)	82, 242, 494, 619, 752, 955, 964, 1132
AlwI	GGATC	3 cut(s)	96, 663, 701
AoxI	GGCC	3 cut(s)	3, 57, 221
ApeKI	GCWGC	1 cut(s)	1019
ApoI	RAATTY	4 cut(s)	503, 713, 881, 1154
ArsI	GACNNNNNNTTYG	2 cut(s)	313, 345
Asp700I	GAANNNNTTC	1 cut(s)	993
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	728
AsuHPI	GGTGA	4 cut(s)	83, 224, 691, 929
AsuNHI	GCTAGC	1 cut(s)	1085
AvaII	GGWCC	1 cut(s)	728
BaeGI	GKGCMC	1 cut(s)	1117
BanII	GRGCYC	1 cut(s)	637
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	1006
BccI	CCATC	3 cut(s)	116, 119, 785
BclI	TGATCA	1 cut(s)	289
BfaI	CTAG	2 cut(s)	95, 1086
BfrI	CTTAAG	1 cut(s)	1139
BisI	GCNGC	1 cut(s)	1020
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	1 cut(s)	1021
Bme18I	GGWCC	1 cut(s)	728
BmeRI	GACNNNNNGTC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	2 cut(s)	354, 866
BmsI	GCATC	4 cut(s)	601, 889, 901, 1072
BmtI	GCTAGC	1 cut(s)	1089
BpiI	GAAGAC	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	1139
Bpu1102I	GCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	2 cut(s)	68, 681
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	1006
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse1I	ACTGG	3 cut(s)	670, 1122, 1198
Bse8I	GATNNNNATC	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	1006
BseGI	GGATG	1 cut(s)	904
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMII	CTCAG	3 cut(s)	528, 606, 942
BseNI	ACTGG	3 cut(s)	670, 1122, 1198
BseRI	GAGGAG	1 cut(s)	1162
BseSI	GKGCMC	1 cut(s)	1117
BseXI	GCAGC	1 cut(s)	1006
Bsh1236I	CGCG	1 cut(s)	923
BshFI	GGCC	3 cut(s)	5, 59, 223
BslI	CCNNNNNNNGG	1 cut(s)	409
BsnI	GGCC	3 cut(s)	5, 59, 223
Bsp1286I	GDGCHC	2 cut(s)	637, 1117
Bsp1407I	TGTACA	1 cut(s)	967
Bsp143I	GATC	6 cut(s)	88, 289, 316, 655, 706, 814
Bsp1720I	GCTNAGC	1 cut(s)	615
BspACI	CCGC	2 cut(s)	356, 583
BspANI	GGCC	3 cut(s)	5, 59, 223
BspCNI	CTCAG	3 cut(s)	529, 607, 943
BspFNI	CGCG	1 cut(s)	923
BspHI	TCATGA	1 cut(s)	997
BspLI	GGNNCC	2 cut(s)	354, 866
BspOI	GCTAGC	1 cut(s)	1089
BspPI	GGATC	3 cut(s)	96, 663, 701
BspQI	GCTCTTC	1 cut(s)	195
BspTI	CTTAAG	1 cut(s)	1139
BsrGI	TGTACA	1 cut(s)	967
BsrI	ACTGG	3 cut(s)	670, 1122, 1198
BssECI	CCNNGG	1 cut(s)	1006
BssMI	GATC	6 cut(s)	88, 289, 316, 655, 706, 814
BssT1I	CCWWGG	1 cut(s)	1006
Bst6I	CTCTTC	2 cut(s)	79, 195
BstAFI	CTTAAG	1 cut(s)	1139
BstAUI	TGTACA	1 cut(s)	967
BstC8I	GCNNGC	7 cut(s)	186, 341, 411, 530, 798, 1087, 1099
BstDEI	CTNAG	3 cut(s)	537, 615, 951
BstF5I	GGATG	1 cut(s)	904
BstFNI	CGCG	1 cut(s)	923
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	6 cut(s)	91, 292, 319, 658, 709, 817
BstMBI	GATC	6 cut(s)	88, 289, 316, 655, 706, 814
BstMWI	GCNNNNNNNGC	5 cut(s)	538, 782, 830, 920, 961
BstNSI	RCATGY	5 cut(s)	343, 424, 800, 1058, 1101
BstSLI	GKGCMC	1 cut(s)	1117
BstUI	CGCG	1 cut(s)	923
BstV1I	GCAGC	1 cut(s)	1006
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	2 cut(s)	655, 706
BstYI	RGATCY	2 cut(s)	655, 706
BsuRI	GGCC	3 cut(s)	5, 59, 223
BtgZI	GCGATG	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	904
BtsIMutI	CAGTG	4 cut(s)	534, 663, 1077, 1115
Cac8I	GCNNGC	7 cut(s)	186, 341, 411, 530, 798, 1087, 1099
CciI	TCATGA	1 cut(s)	997
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	728
CseI	GACGC	1 cut(s)	929
Csp6I	GTAC	2 cut(s)	400, 968
CviQI	GTAC	2 cut(s)	400, 968
DdeI	CTNAG	3 cut(s)	537, 615, 951
DpnI	GATC	6 cut(s)	90, 291, 318, 657, 708, 816
DpnII	GATC	6 cut(s)	88, 289, 316, 655, 706, 814
DriI	GACNNNNNGTC	1 cut(s)	421
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	79, 195
Eam1105I	GACNNNNNGTC	1 cut(s)	421
EarI	CTCTTC	2 cut(s)	79, 195
Eco130I	CCWWGG	1 cut(s)	1006
Eco24I	GRGCYC	1 cut(s)	637
Eco47I	GGWCC	1 cut(s)	728
Eco57I	CTGAAG	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	1006
EcoT38I	GRGCYC	1 cut(s)	637
ErhI	CCWWGG	1 cut(s)	1006
FalI	AAGNNNNNCTT	2 cut(s)	978, 1010
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	1020
FokI	GGATG	1 cut(s)	911
FriOI	GRGCYC	1 cut(s)	637
Fsp4HI	GCNGC	1 cut(s)	1020
FspBI	CTAG	2 cut(s)	95, 1086
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	1 cut(s)	1020
GsuI	CTGGAG	1 cut(s)	1139
HaeIII	GGCC	3 cut(s)	5, 59, 223
HgaI	GACGC	1 cut(s)	929
HhaI	GCGC	1 cut(s)	345
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	8 cut(s)	215, 283, 442, 605, 682, 689, 1070, 1135
HphI	GGTGA	4 cut(s)	83, 224, 691, 929
Hpy188I	TCNGA	8 cut(s)	13, 321, 427, 556, 574, 610, 952, 1161
Hpy188III	TCNNGA	5 cut(s)	287, 602, 686, 710, 998
Hpy99I	CGWCG	1 cut(s)	1113
HpyAV	CCTTC	2 cut(s)	16, 75
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	7 cut(s)	528, 719, 785, 890, 902, 935, 1127
HpyF10VI	GCNNNNNNNGC	5 cut(s)	538, 782, 830, 920, 961
HpyF3I	CTNAG	3 cut(s)	537, 615, 951
HpySE526I	ACGT	1 cut(s)	202
HspAI	GCGC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	6 cut(s)	88, 289, 316, 655, 706, 814
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	749
Lsp1109I	GCAGC	1 cut(s)	1006
LweI	GCATC	4 cut(s)	601, 889, 901, 1072
MaeI	CTAG	2 cut(s)	95, 1086
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	2 cut(s)	679, 917
MalI	GATC	6 cut(s)	90, 291, 318, 657, 708, 816
MboI	GATC	6 cut(s)	88, 289, 316, 655, 706, 814
MboII	GAAGA	7 cut(s)	66, 136, 182, 650, 920, 1073, 1181
MflI	RGATCY	2 cut(s)	655, 706
MhlI	GDGCHC	2 cut(s)	637, 1117
MluI	ACGCGT	1 cut(s)	921
MlyI	GAGTC	4 cut(s)	224, 292, 436, 676
MnlI	CCTC	4 cut(s)	80, 244, 837, 1140
MroXI	GAANNNNTTC	1 cut(s)	993
MseI	TTAA	2 cut(s)	984, 1140
MslI	CAYNNNNRTG	1 cut(s)	801
MspA1I	CMGCKG	1 cut(s)	585
MspCI	CTTAAG	1 cut(s)	1139
MvnI	CGCG	1 cut(s)	923
MwoI	GCNNNNNNNGC	5 cut(s)	538, 782, 830, 920, 961
NdeII	GATC	6 cut(s)	88, 289, 316, 655, 706, 814
NheI	GCTAGC	1 cut(s)	1085
NlaIV	GGNNCC	2 cut(s)	354, 866
NmuCI	GTSAC	2 cut(s)	679, 917
NspI	RCATGY	5 cut(s)	343, 424, 800, 1058, 1101
PaeI	GCATGC	3 cut(s)	343, 800, 1101
PagI	TCATGA	1 cut(s)	997
PciI	ACATGT	2 cut(s)	420, 1054
PciSI	GCTCTTC	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	993
PfeI	GAWTC	4 cut(s)	605, 689, 1070, 1135
PflFI	GACNNNGTC	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	1021
PleI	GAGTC	4 cut(s)	223, 291, 436, 676
PpsI	GAGTC	4 cut(s)	223, 291, 436, 676
PscI	ACATGT	2 cut(s)	420, 1054
PsiI	TTATAA	1 cut(s)	942
PspN4I	GGNNCC	2 cut(s)	354, 866
PspPI	GGNCC	1 cut(s)	728
PsuI	RGATCY	2 cut(s)	655, 706
PsyI	GACNNNGTC	1 cut(s)	325
RsaI	GTAC	2 cut(s)	401, 969
RsaNI	GTAC	2 cut(s)	400, 968
RseI	CAYNNNNRTG	1 cut(s)	801
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	984, 1140
SatI	GCNGC	1 cut(s)	1020
Sau3AI	GATC	6 cut(s)	88, 289, 316, 655, 706, 814
Sau96I	GGNCC	1 cut(s)	728
SchI	GAGTC	4 cut(s)	224, 292, 436, 676
SduI	GDGCHC	2 cut(s)	637, 1117
SfaNI	GCATC	4 cut(s)	601, 889, 901, 1072
SinI	GGWCC	1 cut(s)	728
SmiMI	CAYNNNNRTG	1 cut(s)	801
SmlI	CTYRAG	3 cut(s)	83, 696, 1139
SmoI	CTYRAG	3 cut(s)	83, 696, 1139
SphI	GCATGC	3 cut(s)	343, 800, 1101
SsiI	CCGC	2 cut(s)	356, 583
SspMI	CTAG	2 cut(s)	95, 1086
StyI	CCWWGG	1 cut(s)	1006
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	3 cut(s)	480, 817, 1059
TatI	WGTACW	1 cut(s)	967
TfiI	GAWTC	4 cut(s)	605, 689, 1070, 1135
Tru1I	TTAA	2 cut(s)	984, 1140
Tru9I	TTAA	2 cut(s)	984, 1140
TscAI	CASTG	4 cut(s)	541, 670, 1084, 1122
TseFI	GTSAC	2 cut(s)	679, 917
TseI	GCWGC	1 cut(s)	1019
Tsp45I	GTSAC	2 cut(s)	679, 917
TspDTI	ATGAA	4 cut(s)	136, 819, 986, 1170
TspRI	CASTG	4 cut(s)	541, 670, 1084, 1122
Tth111I	GACNNNGTC	1 cut(s)	325
Vha464I	CTTAAG	1 cut(s)	1139
VpaK11BI	GGWCC	1 cut(s)	728
XapI	RAATTY	4 cut(s)	503, 713, 881, 1154
XceI	RCATGY	5 cut(s)	343, 424, 800, 1058, 1101
XmnI	GAANNNNTTC	1 cut(s)	993
XspI	CTAG	2 cut(s)	95, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.