Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000016.1

Orthogroup ID

OG0003367

Physical Location & Seq

Genomic Coordinates Reverse (-)

46627 .. 50608

Gene Structure 3982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000016.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atggccttctccgagttccagccactgaacgacaagtcgctcctagactacataaaggccacaccttccctctcttccaagctcaaagaccacctagacaacttaaccatcaaggaagtcggcgatggcaatctcaatttcgtcttcatcgtcgttggttctcatggctcttttgtcatcaagcaggctcttccatacatacgttgtataggtgagtcatggccgatgacaaaggaaagagcttattttgaggcattggcactgagagagcatggtcgtttgagtcctgatcatgtgcctgaagtttatcactttgatcgaaccatgtctttgattggcatgcgctatctggaacctccacatattatactgcgaaagggattgattgctggaattgagtaccctttgttggctgaccacatgtcagactatatggcaaggaccctgttccacacttctctcctttatcataatactaccgaccacaggaaagctgttgctgaattttgtggaaatgtggagttatgcaggctcactgagcaagttgttttctctgacccttacaaagtatctgaatataaccgctggacttctccttatcttgattctgatgctgaggctgtgcgagaggacaatgctttgaagcttgaagttgctgagttgaaatctttgttctgtgagagagcccaagccctaatacatggagatcttcacactggttctgtaatggtgactcctgattcaactcaagttatagatccagaatttgcattttatggaccaataggttttgatattggagcttttctgggaaacttgattttggctttctttgcacaagatgggcatgctgatgaacaaaatgatcgaaaagcatacaaggcttggattttgaggataattcaaaatacatggaaccttttcgacaaaaaatttatcgcactatgggatgcgaacaaagatgctggtgacgcgtatcttcctgcaatttataacaactctgagcttcaacagcttgtacaagacaaatatattaaagaattgcttcatgacacccttggatttggtgctgcaaaaatgattaggagaattgttggtgtggcacatgtcgaagattttgaatcaatcactgatgctagcaagagatcgggctgtgagcgacgggcacttgagtttgcaaagctgattcttaaggagaggagaaaatttcagaacattgaggaagttgtttcagccgttcagcaaatccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019509 GO:0019752 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042802 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046522 GO:0050896 GO:0051716 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

APH

Protein Analysis

417

Amino Acids

47.53

Weight (kDa)

5.7

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49820
fragaria_vesca	FvH4_2g05040
malus_domestica	MD10G1098200.v1.1 MD10G1098700.v1.1 MD10G1147300.v1.1
prunus_persica	Prupe.7G233900_v2.0.a1 Prupe.8G136000_v2.0.a1
pyrus_communis	pycom10g08390
rosa_chinensis	RchiOBHm_Chr2g0122061 RchiOBHm_Chr6g0254911 RchiOBHm_Chr6g0254921
rosa_laevigata	RLG00000014878 RLG00000014883
rosa_multiflora	Rmu_sc0000016.1_g000011 Rmu_sc0003880.1_g000001 Rmu_sc0010925.1_g000019
rosa_roxburghii	Rroxscaffold_2G00122040 Rroxscaffold_7G00210480
rosa_rugosa	Rorug02G0236200 Rorug02G0236300 Rorug05G0555300
rosa_samantha	Rh2AG292600 Rh2BG303200 Rh2CG281700 Rh2DG316800 Rh6AG072700 Rh6BG064800 Rh6BG065000 Rh6CG063900 Rh6CG064800 Rh6DG061000 Rh6DG061800
rosa_wichuraiana	Rw0G002700 Rw2G023480 Rw6G006330 Rw6G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	993
AccII	CGCG	1 cut(s)	974
AciI	CCGC	1 cut(s)	583
AclWI	GGATC	1 cut(s)	752
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	4 cut(s)	503, 764, 932, 1205
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	401, 1020
AfiI	CCNNNNNNNGG	2 cut(s)	409, 486
AflII	CTTAAG	1 cut(s)	1190
AflIII	ACRYGT	3 cut(s)	420, 972, 1105
AgsI	TTSAA	7 cut(s)	643, 650, 664, 744, 905, 1010, 1121
AhdI	GACNNNNNGTC	1 cut(s)	421
AluBI	AGCT	8 cut(s)	82, 242, 494, 646, 803, 1006, 1015, 1183
AluI	AGCT	8 cut(s)	82, 242, 494, 646, 803, 1006, 1015, 1183
AlwI	GGATC	1 cut(s)	752
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	3 cut(s)	3, 57, 221
ApeKI	GCWGC	1 cut(s)	1070
ApoI	RAATTY	4 cut(s)	503, 764, 932, 1205
Asp700I	GAANNNNTTC	2 cut(s)	920, 1044
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	441, 779
AsuHPI	GGTGA	3 cut(s)	224, 742, 980
AsuNHI	GCTAGC	1 cut(s)	1136
AvaII	GGWCC	2 cut(s)	441, 779
BaeGI	GKGCMC	1 cut(s)	1168
BanII	GRGCYC	1 cut(s)	688
BbsI	GAAGAC	1 cut(s)	136
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	1 cut(s)	1057
BccI	CCATC	3 cut(s)	116, 119, 836
BceAI	ACGGC	1 cut(s)	1220
BclI	TGATCA	1 cut(s)	289
BfaI	CTAG	3 cut(s)	44, 95, 1137
BfrI	CTTAAG	1 cut(s)	1190
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	1 cut(s)	1071
BlsI	GCNGC	1 cut(s)	1072
Bme18I	GGWCC	2 cut(s)	441, 779
BmeRI	GACNNNNNGTC	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	441, 779
BmiI	GGNNCC	3 cut(s)	354, 443, 917
BmsI	GCATC	4 cut(s)	601, 940, 952, 1123
BmtI	GCTAGC	1 cut(s)	1140
BpiI	GAAGAC	1 cut(s)	136
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	2 cut(s)	732, 1190
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	1057
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 486
Bse1I	ACTGG	2 cut(s)	721, 1249
Bse8I	GATNNNNATC	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	1057
BseGI	GGATG	1 cut(s)	955
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	409, 486
BseMII	CTCAG	5 cut(s)	254, 528, 606, 648, 993
BseNI	ACTGG	2 cut(s)	721, 1249
BseRI	GAGGAG	1 cut(s)	1213
BseSI	GKGCMC	1 cut(s)	1168
BseXI	GCAGC	1 cut(s)	1057
Bsh1236I	CGCG	1 cut(s)	974
BshFI	GGCC	3 cut(s)	5, 59, 223
BslI	CCNNNNNNNGG	2 cut(s)	409, 486
BsnI	GGCC	3 cut(s)	5, 59, 223
Bsp1286I	GDGCHC	2 cut(s)	688, 1168
Bsp1407I	TGTACA	1 cut(s)	1018
Bsp143I	GATC	6 cut(s)	289, 316, 706, 757, 865, 1145
BspACI	CCGC	1 cut(s)	583
BspANI	GGCC	3 cut(s)	5, 59, 223
BspCNI	CTCAG	5 cut(s)	255, 529, 607, 649, 994
BspFNI	CGCG	1 cut(s)	974
BspHI	TCATGA	1 cut(s)	1048
BspLI	GGNNCC	3 cut(s)	354, 443, 917
BspOI	GCTAGC	1 cut(s)	1140
BspPI	GGATC	1 cut(s)	752
BspQI	GCTCTTC	1 cut(s)	195
BspTI	CTTAAG	1 cut(s)	1190
BsrGI	TGTACA	1 cut(s)	1018
BsrI	ACTGG	2 cut(s)	721, 1249
BssECI	CCNNGG	1 cut(s)	1057
BssMI	GATC	6 cut(s)	289, 316, 706, 757, 865, 1145
BssT1I	CCWWGG	1 cut(s)	1057
Bst6I	CTCTTC	2 cut(s)	79, 195
BstAFI	CTTAAG	1 cut(s)	1190
BstAUI	TGTACA	1 cut(s)	1018
BstC8I	GCNNGC	5 cut(s)	186, 341, 530, 849, 1138
BstDEI	CTNAG	5 cut(s)	263, 537, 615, 657, 1002
BstF5I	GGATG	1 cut(s)	955
BstFNI	CGCG	1 cut(s)	974
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	6 cut(s)	292, 319, 709, 760, 868, 1148
BstMBI	GATC	6 cut(s)	289, 316, 706, 757, 865, 1145
BstMWI	GCNNNNNNNGC	5 cut(s)	538, 833, 881, 971, 1012
BstNSI	RCATGY	4 cut(s)	343, 424, 851, 1109
BstSLI	GKGCMC	1 cut(s)	1168
BstUI	CGCG	1 cut(s)	974
BstV1I	GCAGC	1 cut(s)	1057
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	2 cut(s)	706, 757
BstYI	RGATCY	2 cut(s)	706, 757
BsuRI	GGCC	3 cut(s)	5, 59, 223
BtgZI	GCGATG	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	955
BtsIMutI	CAGTG	5 cut(s)	23, 260, 534, 714, 1128
Cac8I	GCNNGC	5 cut(s)	186, 341, 530, 849, 1138
CaiI	CAGNNNCTG	1 cut(s)	25
CciI	TCATGA	1 cut(s)	1048
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	441, 779
CseI	GACGC	1 cut(s)	980
Csp6I	GTAC	2 cut(s)	400, 1019
CviQI	GTAC	2 cut(s)	400, 1019
DdeI	CTNAG	5 cut(s)	263, 537, 615, 657, 1002
DpnI	GATC	6 cut(s)	291, 318, 708, 759, 867, 1147
DpnII	GATC	6 cut(s)	289, 316, 706, 757, 865, 1145
DriI	GACNNNNNGTC	1 cut(s)	421
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	79, 195
Eam1105I	GACNNNNNGTC	1 cut(s)	421
EarI	CTCTTC	2 cut(s)	79, 195
Eco130I	CCWWGG	1 cut(s)	1057
Eco24I	GRGCYC	1 cut(s)	688
Eco47I	GGWCC	2 cut(s)	441, 779
Eco57I	CTGAAG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	1057
EcoT38I	GRGCYC	1 cut(s)	688
ErhI	CCWWGG	1 cut(s)	1057
FalI	AAGNNNNNCTT	2 cut(s)	1029, 1061
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	1071
FokI	GGATG	1 cut(s)	962
FriOI	GRGCYC	1 cut(s)	688
Fsp4HI	GCNGC	1 cut(s)	1071
FspBI	CTAG	3 cut(s)	44, 95, 1137
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	1 cut(s)	1071
HaeIII	GGCC	3 cut(s)	5, 59, 223
HgaI	GACGC	1 cut(s)	980
HhaI	GCGC	1 cut(s)	345
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	7 cut(s)	215, 283, 605, 733, 740, 1121, 1186
HphI	GGTGA	3 cut(s)	224, 742, 980
Hpy188I	TCNGA	7 cut(s)	13, 427, 556, 574, 610, 1003, 1212
Hpy188III	TCNNGA	6 cut(s)	287, 350, 602, 737, 761, 1049
Hpy99I	CGWCG	2 cut(s)	155, 1164
HpyAV	CCTTC	2 cut(s)	16, 75
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	6 cut(s)	528, 770, 836, 986, 1073, 1178
HpyF10VI	GCNNNNNNNGC	5 cut(s)	538, 833, 881, 971, 1012
HpyF3I	CTNAG	5 cut(s)	263, 537, 615, 657, 1002
HpySE526I	ACGT	1 cut(s)	202
HspAI	GCGC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	6 cut(s)	289, 316, 706, 757, 865, 1145
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	45, 800
Lsp1109I	GCAGC	1 cut(s)	1057
LweI	GCATC	4 cut(s)	601, 940, 952, 1123
MaeI	CTAG	3 cut(s)	44, 95, 1137
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	2 cut(s)	730, 968
MalI	GATC	6 cut(s)	291, 318, 708, 759, 867, 1147
MboI	GATC	6 cut(s)	289, 316, 706, 757, 865, 1145
MboII	GAAGA	6 cut(s)	66, 136, 182, 701, 971, 1124
MflI	RGATCY	2 cut(s)	706, 757
MhlI	GDGCHC	2 cut(s)	688, 1168
MluI	ACGCGT	1 cut(s)	972
MlyI	GAGTC	3 cut(s)	224, 292, 727
MnlI	CCTC	8 cut(s)	80, 244, 366, 610, 622, 888, 1191, 1213
MroXI	GAANNNNTTC	2 cut(s)	920, 1044
MseI	TTAA	3 cut(s)	104, 1035, 1191
MslI	CAYNNNNRTG	1 cut(s)	852
MspA1I	CMGCKG	1 cut(s)	585
MspCI	CTTAAG	1 cut(s)	1190
MvnI	CGCG	1 cut(s)	974
MwoI	GCNNNNNNNGC	5 cut(s)	538, 833, 881, 971, 1012
NdeII	GATC	6 cut(s)	289, 316, 706, 757, 865, 1145
NheI	GCTAGC	1 cut(s)	1136
NlaIV	GGNNCC	3 cut(s)	354, 443, 917
NmuCI	GTSAC	2 cut(s)	730, 968
NspI	RCATGY	4 cut(s)	343, 424, 851, 1109
PaeI	GCATGC	2 cut(s)	343, 851
PagI	TCATGA	1 cut(s)	1048
PciI	ACATGT	2 cut(s)	420, 1105
PciSI	GCTCTTC	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdmI	GAANNNNTTC	2 cut(s)	920, 1044
PfeI	GAWTC	4 cut(s)	605, 740, 1121, 1186
PkrI	GCNGC	1 cut(s)	1072
PleI	GAGTC	3 cut(s)	223, 291, 727
PpsI	GAGTC	3 cut(s)	223, 291, 727
PpuMI	RGGWCCY	1 cut(s)	441
PscI	ACATGT	2 cut(s)	420, 1105
PsiI	TTATAA	1 cut(s)	993
Psp5II	RGGWCCY	1 cut(s)	441
PspN4I	GGNNCC	3 cut(s)	354, 443, 917
PspPI	GGNCC	2 cut(s)	441, 779
PspPPI	RGGWCCY	1 cut(s)	441
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	706, 757
RsaI	GTAC	2 cut(s)	401, 1020
RsaNI	GTAC	2 cut(s)	400, 1019
RseI	CAYNNNNRTG	1 cut(s)	852
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	104, 1035, 1191
SatI	GCNGC	1 cut(s)	1071
Sau3AI	GATC	6 cut(s)	289, 316, 706, 757, 865, 1145
Sau96I	GGNCC	2 cut(s)	441, 779
SchI	GAGTC	3 cut(s)	224, 292, 727
SduI	GDGCHC	2 cut(s)	688, 1168
SfaNI	GCATC	4 cut(s)	601, 940, 952, 1123
SinI	GGWCC	2 cut(s)	441, 779
SmiMI	CAYNNNNRTG	1 cut(s)	852
SmlI	CTYRAG	3 cut(s)	747, 1169, 1190
SmoI	CTYRAG	3 cut(s)	747, 1169, 1190
SphI	GCATGC	2 cut(s)	343, 851
SsiI	CCGC	1 cut(s)	583
SspMI	CTAG	3 cut(s)	44, 95, 1137
StyI	CCWWGG	1 cut(s)	1057
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	4 cut(s)	319, 868, 924, 1110
TatI	WGTACW	1 cut(s)	1018
TfiI	GAWTC	4 cut(s)	605, 740, 1121, 1186
Tru1I	TTAA	3 cut(s)	104, 1035, 1191
Tru9I	TTAA	3 cut(s)	104, 1035, 1191
TscAI	CASTG	5 cut(s)	30, 267, 541, 721, 1135
TseFI	GTSAC	2 cut(s)	730, 968
TseI	GCWGC	1 cut(s)	1070
Tsp45I	GTSAC	2 cut(s)	730, 968
TspDTI	ATGAA	3 cut(s)	136, 870, 1037
TspRI	CASTG	5 cut(s)	30, 267, 541, 721, 1135
Vha464I	CTTAAG	1 cut(s)	1190
VpaK11BI	GGWCC	2 cut(s)	441, 779
XapI	RAATTY	4 cut(s)	503, 764, 932, 1205
XceI	RCATGY	4 cut(s)	343, 424, 851, 1109
XmnI	GAANNNNTTC	2 cut(s)	920, 1044
XspI	CTAG	3 cut(s)	44, 95, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.