Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003367

Physical Location & Seq

Genomic Coordinates Forward (+)

23610429 .. 23612800

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0236200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATGAAGCAGCACCTCCATGGAACAACCAATGTTGGCTTTGTGTTTGGAGAAGGCATTATGCTGGGGAACGGTGCAATAATCACAACTTCCTACACGGATGAAGGCGGCACTGAATATAATGAATTACTATCAGATCAGGAAGTCACAATATTTCAATTATGTTCCAAACCCAAAATATATTGTACTTTGATGGGGGATGTCAAAGAATGGCATGAAATGTACAGACATTTGCTTGACCTAGAACCGAAATCAGTGAGAGCATCATTTGACTGCGCAAAAAAGTATTTAAATGACTTCCTAAAAAAGAATCGAAGGAGTGGGAATAGTTTTGGCACAATTATTGCCGGATACCACAAAGAAGAGGGCTTTCAAATTCTAGGTGTTTCGCTAGACAAGAAAAAAGTACGCGAATACACTGATCGAGAGTTTTCAATAGGATCTGGTGGTTTCTTTGCTGACCTAGTTCTTCTCAAAACTAATGCTGACGGTTATGCTAACATGACCAAAGAAGTTGCTGTTAATGTGGCCTTTGAAGCTCTATTGCAAGGAAGTTTGAAAGATTATTGCTCCGGTGGAATTCTGAGGGGTAATGTCGGACAAGGAAGAACAAGCTACTTTGTTCTTGCTATATTCTACAAGTTTTGGTCCTATTTCGGAGGAGATAATCTACAAGCACTCATAAGCGACATCTGGTCAGGAGGACTAAAGAGTATTATCCATTCTAATATCATAGCAAAAAAGGCTTGCTTTTATGTTCATCGAATAGTGCTCAAAGATGAAAAGGAGGCTATAAAAGCATACGATGACATAAGCACTAAAAATGCTAGGCCCATTTATCCTCAGGCTTTAGCTCATATTCGAAGCTACTTAATTGATTGTGTAAGAGAAAAAACTAGAGAGCATGTTTACATTGGAAGGAGCTCCAAGGAGTTGTTAGAAGGCATATGCATGTTGAAGGATGCAGATACTTTAAAGTATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019509 GO:0019752 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042802 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046522 GO:0050896 GO:0051716 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

APH

Protein Analysis

328

Amino Acids

37.0

Weight (kDa)

8.31

Isoelectric Point (pI)

26.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49820
fragaria_vesca	FvH4_2g05040
malus_domestica	MD10G1098200.v1.1 MD10G1098700.v1.1 MD10G1147300.v1.1
prunus_persica	Prupe.7G233900_v2.0.a1 Prupe.8G136000_v2.0.a1
pyrus_communis	pycom10g08390
rosa_chinensis	RchiOBHm_Chr2g0122061 RchiOBHm_Chr6g0254911 RchiOBHm_Chr6g0254921
rosa_laevigata	RLG00000014878 RLG00000014883
rosa_multiflora	Rmu_sc0000016.1_g000011 Rmu_sc0003880.1_g000001 Rmu_sc0010925.1_g000019
rosa_roxburghii	Rroxscaffold_2G00122040 Rroxscaffold_7G00210480
rosa_rugosa	Rorug02G0236200 Rorug02G0236300 Rorug05G0555300
rosa_samantha	Rh2AG292600 Rh2BG303200 Rh2CG281700 Rh2DG316800 Rh6AG072700 Rh6BG064800 Rh6BG065000 Rh6CG063900 Rh6CG064800 Rh6DG061000 Rh6DG061800
rosa_wichuraiana	Rw0G002700 Rw2G023480 Rw6G006330 Rw6G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	277
AccII	CGCG	1 cut(s)	411
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	448
AcsI	RAATTY	2 cut(s)	375, 579
AfaI	GTAC	3 cut(s)	187, 224, 408
AgsI	TTSAA	6 cut(s)	158, 374, 435, 536, 559, 958
AhdI	GACNNNNNGTC	1 cut(s)	694
AluBI	AGCT	5 cut(s)	539, 615, 854, 867, 924
AluI	AGCT	5 cut(s)	539, 615, 854, 867, 924
Alw21I	GWGCWC	2 cut(s)	774, 926
AlwI	GGATC	1 cut(s)	448
AoxI	GGCC	2 cut(s)	528, 830
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	2 cut(s)	375, 579
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	2 cut(s)	648, 831
AsuII	TTCGAA	1 cut(s)	862
AvaII	GGWCC	1 cut(s)	648
AxyI	CCTNAGG	1 cut(s)	843
BanII	GRGCYC	1 cut(s)	926
Bbv12I	GWGCWC	2 cut(s)	774, 926
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	187
BciVI	GTATCC	1 cut(s)	344
BfaI	CTAG	6 cut(s)	242, 380, 392, 464, 828, 897
BfuI	GTATCC	1 cut(s)	344
BisI	GCNGC	2 cut(s)	11, 109
BlsI	GCNGC	2 cut(s)	12, 110
Bme18I	GGWCC	1 cut(s)	648
BmeRI	GACNNNNNGTC	1 cut(s)	694
BmgT120I	GGNCC	2 cut(s)	648, 831
BmsI	GCATC	2 cut(s)	272, 952
Bpu14I	TTCGAA	1 cut(s)	862
BsaJI	CCNNGG	2 cut(s)	19, 927
BsaWI	WCCGGW	1 cut(s)	572
Bse21I	CCTNAGG	1 cut(s)	843
BseDI	CCNNGG	2 cut(s)	19, 927
BseGI	GGATG	3 cut(s)	106, 205, 967
BseMII	CTCAG	2 cut(s)	575, 857
BseRI	GAGGAG	1 cut(s)	675
BseXI	GCAGC	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	411
BshFI	GGCC	2 cut(s)	530, 832
BsiHKAI	GWGCWC	2 cut(s)	774, 926
BsiSI	CCGG	2 cut(s)	348, 573
BsnI	GGCC	2 cut(s)	530, 832
Bsp119I	TTCGAA	1 cut(s)	862
Bsp1286I	GDGCHC	2 cut(s)	774, 926
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	136, 421, 440
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	2 cut(s)	530, 832
BspCNI	CTCAG	2 cut(s)	576, 856
BspFNI	CGCG	1 cut(s)	411
BspPI	GGATC	1 cut(s)	448
BspT104I	TTCGAA	1 cut(s)	862
BsrGI	TGTACA	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	19, 927
BssMI	GATC	3 cut(s)	136, 421, 440
BssT1I	CCWWGG	2 cut(s)	19, 927
Bst4CI	ACNGT	2 cut(s)	74, 491
Bst6I	CTCTTC	1 cut(s)	357
BstAUI	TGTACA	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	862
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	2 cut(s)	584, 843
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	3 cut(s)	106, 205, 967
BstFNI	CGCG	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	3 cut(s)	139, 424, 443
BstMBI	GATC	3 cut(s)	136, 421, 440
BstMWI	GCNNNNNNNGC	3 cut(s)	536, 743, 797
BstNSI	RCATGY	2 cut(s)	908, 955
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
Bsu36I	CCTNAGG	1 cut(s)	843
BsuI	GTATCC	1 cut(s)	344
BsuRI	GGCC	2 cut(s)	530, 832
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	106, 205, 967
BtsIMutI	CAGTG	3 cut(s)	111, 261, 417
Cac8I	GCNNGC	1 cut(s)	748
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	648, 831
Csp6I	GTAC	3 cut(s)	186, 223, 407
CviAII	CATG	5 cut(s)	20, 215, 502, 905, 952
CviQI	GTAC	3 cut(s)	186, 223, 407
DdeI	CTNAG	2 cut(s)	584, 843
DpnI	GATC	3 cut(s)	138, 423, 442
DpnII	GATC	3 cut(s)	136, 421, 440
DraI	TTTAAA	2 cut(s)	291, 975
DriI	GACNNNNNGTC	1 cut(s)	694
Eam1104I	CTCTTC	1 cut(s)	357
Eam1105I	GACNNNNNGTC	1 cut(s)	694
EarI	CTCTTC	1 cut(s)	357
Ecl136II	GAGCTC	1 cut(s)	924
Eco130I	CCWWGG	2 cut(s)	19, 927
Eco24I	GRGCYC	1 cut(s)	926
Eco47I	GGWCC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	924
Eco81I	CCTNAGG	1 cut(s)	843
EcoICRI	GAGCTC	1 cut(s)	924
EcoRI	GAATTC	1 cut(s)	579
EcoT14I	CCWWGG	2 cut(s)	19, 927
EcoT22I	ATGCAT	1 cut(s)	953
EcoT38I	GRGCYC	1 cut(s)	926
ErhI	CCWWGG	2 cut(s)	19, 927
FaeI	CATG	5 cut(s)	23, 218, 505, 908, 955
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FatI	CATG	5 cut(s)	19, 214, 501, 904, 951
FauNDI	CATATG	1 cut(s)	947
Fnu4HI	GCNGC	2 cut(s)	11, 109
FokI	GGATG	3 cut(s)	113, 212, 974
FriOI	GRGCYC	1 cut(s)	926
Fsp4HI	GCNGC	2 cut(s)	11, 109
FspBI	CTAG	6 cut(s)	242, 380, 392, 464, 828, 897
FspI	TGCGCA	1 cut(s)	277
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	2 cut(s)	11, 109
GsaI	CCCAGC	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	530, 832
HapII	CCGG	2 cut(s)	348, 573
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	5 cut(s)	23, 218, 505, 908, 955
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	2 cut(s)	348, 573
Hpy166II	GTNNAC	1 cut(s)	910
Hpy188I	TCNGA	4 cut(s)	136, 585, 599, 659
Hpy188III	TCNNGA	3 cut(s)	140, 425, 699
Hpy8I	GTNNAC	1 cut(s)	910
HpyAV	CCTTC	6 cut(s)	47, 98, 309, 912, 935, 952
HpyCH4III	ACNGT	2 cut(s)	74, 491
HpyCH4V	TGCA	4 cut(s)	77, 547, 951, 965
HpyF10VI	GCNNNNNNNGC	3 cut(s)	536, 743, 797
HpyF3I	CTNAG	2 cut(s)	584, 843
Hsp92II	CATG	5 cut(s)	23, 218, 505, 908, 955
HspAI	GCGC	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	136, 421, 440
LmnI	GCTCC	3 cut(s)	575, 921, 929
LpnPI	CCDG	8 cut(s)	50, 125, 361, 429, 586, 679, 684, 830
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	2 cut(s)	272, 952
MaeI	CTAG	6 cut(s)	242, 380, 392, 464, 828, 897
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	3 cut(s)	138, 423, 442
MboI	GATC	3 cut(s)	136, 421, 440
MboII	GAAGA	3 cut(s)	374, 461, 618
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	2 cut(s)	774, 926
MluCI	AATT	6 cut(s)	125, 158, 339, 375, 579, 873
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	7 cut(s)	26, 358, 579, 653, 695, 781, 852
Mph1103I	ATGCAT	1 cut(s)	953
MseI	TTAA	4 cut(s)	290, 522, 872, 974
MslI	CAYNNNNRTG	2 cut(s)	18, 950
MspI	CCGG	2 cut(s)	348, 573
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	3 cut(s)	536, 743, 797
NcoI	CCATGG	1 cut(s)	19
NdeI	CATATG	1 cut(s)	947
NdeII	GATC	3 cut(s)	136, 421, 440
NlaIII	CATG	5 cut(s)	23, 218, 505, 908, 955
NmuCI	GTSAC	1 cut(s)	145
NsbI	TGCGCA	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	953
NspI	RCATGY	2 cut(s)	908, 955
NspV	TTCGAA	1 cut(s)	862
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	12, 110
Psp124BI	GAGCTC	1 cut(s)	926
PspFI	CCCAGC	1 cut(s)	64
PspPI	GGNCC	2 cut(s)	648, 831
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	3 cut(s)	187, 224, 408
RsaNI	GTAC	3 cut(s)	186, 223, 407
RseI	CAYNNNNRTG	2 cut(s)	18, 950
SacI	GAGCTC	1 cut(s)	926
SaqAI	TTAA	4 cut(s)	290, 522, 872, 974
SatI	GCNGC	2 cut(s)	11, 109
Sau3AI	GATC	3 cut(s)	136, 421, 440
Sau96I	GGNCC	2 cut(s)	648, 831
SduI	GDGCHC	2 cut(s)	774, 926
SetI	ASST	9 cut(s)	18, 243, 385, 465, 541, 617, 856, 869, 926
SfaNI	GCATC	2 cut(s)	272, 952
SfuI	TTCGAA	1 cut(s)	862
SinI	GGWCC	1 cut(s)	648
SmiI	ATTTAAAT	1 cut(s)	291
SmiMI	CAYNNNNRTG	2 cut(s)	18, 950
Sse9I	AATT	6 cut(s)	125, 158, 339, 375, 579, 873
SsiI	CCGC	1 cut(s)	108
SspI	AATATT	1 cut(s)	153
SspMI	CTAG	6 cut(s)	242, 380, 392, 464, 828, 897
SstI	GAGCTC	1 cut(s)	926
StyI	CCWWGG	2 cut(s)	19, 927
SwaI	ATTTAAAT	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	74, 491
TaqI	TCGA	4 cut(s)	313, 424, 763, 862
TasI	AATT	6 cut(s)	125, 158, 339, 375, 579, 873
TatI	WGTACW	2 cut(s)	185, 222
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	4 cut(s)	290, 522, 872, 974
Tru9I	TTAA	4 cut(s)	290, 522, 872, 974
TscAI	CASTG	3 cut(s)	118, 261, 424
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	6 cut(s)	20, 117, 138, 231, 749, 795
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	3 cut(s)	118, 261, 424
VpaK11BI	GGWCC	1 cut(s)	648
XapI	RAATTY	2 cut(s)	375, 579
XceI	RCATGY	2 cut(s)	908, 955
XspI	CTAG	6 cut(s)	242, 380, 392, 464, 828, 897
Zsp2I	ATGCAT	1 cut(s)	953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.