Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003367

Physical Location & Seq

Genomic Coordinates Forward (+)

60973805 .. 60986234

Gene Structure 12430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCAATCTCAATTTCGTCTTCATCGTCGTTGGTTCTCATGGCTCTTTTGTCATCAAGCAGGGTTTTGCAGGCTCTTCCATACATACGTTGTATAGGTGAGTCATGGCCGAAGACAAAGGAAAGAGCTTATTTTGAGACATTGGCACTGAGAGAGCATGGTCGTTTGAGTCCTGATCATGTGCCTGAAGTTTATCATTTTGATCGGACCATGTCTTTGATTGGCATGCGCTATTTGGAACCTCCCCATATTATACTGCGAAAGGGACTGATTGCTGGAATTGAGTACCCTTTGCTTGCTGACCACATGTCAGACTATATGGCAAGGACTCTGTTCTACACTTCTCTCCTTTATCATGATACTGCCGACCACAGGAAAGCTGTTGTTGAATTTTGTGGAAATGTGGAGTTATGCAGGCACACTGAGCAAGTTGTTTTCTCTGACCCTTACAAAGTATCTGAATATAACCGCTGGACTTCTCCTTATCTTGATTCTGATGCTGAGGCTGTGCGAGAGGACAATGCTTTGAAGCTTGAAGTTGCTGAGTTGAAATCATTGTTATGTGAGAGATCCCAAGCCCTAATACATGGAGATCTTCACACTGGTTCTGTAATGGTGACTCCTGATTCAACTCAAGTTATAGATCCAGAATTTGCATTTTATGGACCAATAGGTTTTGATACTGGAGCTTTTCTGGGAAACTTGATGTTGGCTTTCTTTGCACAAGATGGGCATGCTGATGAACAAAATGATCGAAAAGCATACAAGGCTTGGATTTTGAGGATAATACAAAATACATGGAACTTTTTCCACAAAAAATTTATCGCACTATGGGATGAGAACAAAGATGCTGGTGACGCATATCTTCCTGCAATTTGTAACAACTCTGAGCTTCAACAGCTTGTACAAGACAAATATATTAAAGAATTGCTTCATGACACCCTTGGATTTGGTGCTGCGAAAATGATAAGGAGAATTGTTGGTGTGGCACATGTCGAAGATTTTGAATCAATCACTGATGCTAGCAAGAGAGCGGGCTGTGAGCGACGGGCACTTGAGTTTGCAAAGCTGATTCTTAAGGAGAGGAGAAAATTTCAGAACATTGAGGAAGTTGTTTCAGCCGTTCAGCAAATCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019509 GO:0019752 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042802 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046522 GO:0050896 GO:0051716 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

APH

Protein Analysis

379

Amino Acids

43.24

Weight (kDa)

5.8

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APH	PF01636	134 - 236	1.9e-10	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49820
fragaria_vesca	FvH4_2g05040
malus_domestica	MD10G1098200.v1.1 MD10G1098700.v1.1 MD10G1147300.v1.1
prunus_persica	Prupe.7G233900_v2.0.a1 Prupe.8G136000_v2.0.a1
pyrus_communis	pycom10g08390
rosa_chinensis	RchiOBHm_Chr2g0122061 RchiOBHm_Chr6g0254911 RchiOBHm_Chr6g0254921
rosa_laevigata	RLG00000014878 RLG00000014883
rosa_multiflora	Rmu_sc0000016.1_g000011 Rmu_sc0003880.1_g000001 Rmu_sc0010925.1_g000019
rosa_roxburghii	Rroxscaffold_2G00122040 Rroxscaffold_7G00210480
rosa_rugosa	Rorug02G0236200 Rorug02G0236300 Rorug05G0555300
rosa_samantha	Rh2AG292600 Rh2BG303200 Rh2CG281700 Rh2DG316800 Rh6AG072700 Rh6BG064800 Rh6BG065000 Rh6CG063900 Rh6CG064800 Rh6DG061000 Rh6DG061800
rosa_wichuraiana	Rw0G002700 Rw2G023480 Rw6G006330 Rw6G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1034
AciI	CCGC	2 cut(s)	469, 1034
AclWI	GGATC	2 cut(s)	564, 638
AcoI	YGGCCR	1 cut(s)	107
AcsI	RAATTY	4 cut(s)	389, 650, 818, 1091
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	2 cut(s)	287, 906
AfiI	CCNNNNNNNGG	1 cut(s)	372
AflII	CTTAAG	1 cut(s)	1076
AflIII	ACRYGT	2 cut(s)	306, 991
AgsI	TTSAA	7 cut(s)	389, 529, 536, 550, 630, 896, 1007
AhdI	GACNNNNNGTC	1 cut(s)	307
AluBI	AGCT	7 cut(s)	128, 380, 532, 689, 892, 901, 1069
AluI	AGCT	7 cut(s)	128, 380, 532, 689, 892, 901, 1069
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	2 cut(s)	564, 638
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	956
ApoI	RAATTY	4 cut(s)	389, 650, 818, 1091
ArsI	GACNNNNNNTTYG	2 cut(s)	199, 231
Asp700I	GAANNNNTTC	2 cut(s)	806, 930
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	207, 665
AsuHPI	GGTGA	3 cut(s)	110, 628, 866
AsuNHI	GCTAGC	1 cut(s)	1022
AvaII	GGWCC	2 cut(s)	207, 665
BaeGI	GKGCMC	1 cut(s)	1054
BbsI	GAAGAC	2 cut(s)	12, 119
BbvCI	CCTCAGC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	943
BccI	CCATC	1 cut(s)	722
BceAI	ACGGC	1 cut(s)	1106
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	1023
BfrI	CTTAAG	1 cut(s)	1076
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	1 cut(s)	957
BlsI	GCNGC	1 cut(s)	958
Bme18I	GGWCC	2 cut(s)	207, 665
BmeRI	GACNNNNNGTC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	207, 665
BmiI	GGNNCC	1 cut(s)	240
BmsI	GCATC	3 cut(s)	487, 838, 1009
BmtI	GCTAGC	1 cut(s)	1026
BpiI	GAAGAC	2 cut(s)	12, 119
BpmI	CTGGAG	1 cut(s)	705
Bpu10I	CCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	2 cut(s)	618, 1076
BsaJI	CCNNGG	1 cut(s)	943
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse1I	ACTGG	3 cut(s)	607, 688, 1135
BseDI	CCNNGG	1 cut(s)	943
BseGI	GGATG	1 cut(s)	841
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMII	CTCAG	5 cut(s)	140, 414, 492, 534, 879
BseNI	ACTGG	3 cut(s)	607, 688, 1135
BseRI	GAGGAG	1 cut(s)	1099
BseSI	GKGCMC	1 cut(s)	1054
BseXI	GCAGC	1 cut(s)	943
BshFI	GGCC	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	1054
Bsp1407I	TGTACA	1 cut(s)	904
Bsp143I	GATC	6 cut(s)	175, 202, 569, 592, 643, 751
BspACI	CCGC	2 cut(s)	469, 1034
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	5 cut(s)	141, 415, 493, 535, 880
BspHI	TCATGA	2 cut(s)	355, 934
BspLI	GGNNCC	1 cut(s)	240
BspOI	GCTAGC	1 cut(s)	1026
BspPI	GGATC	2 cut(s)	564, 638
BspQI	GCTCTTC	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	1076
BsrBI	CCGCTC	1 cut(s)	1034
BsrGI	TGTACA	1 cut(s)	904
BsrI	ACTGG	3 cut(s)	607, 688, 1135
BssECI	CCNNGG	1 cut(s)	943
BssMI	GATC	6 cut(s)	175, 202, 569, 592, 643, 751
BssT1I	CCWWGG	1 cut(s)	943
Bst6I	CTCTTC	1 cut(s)	81
BstAFI	CTTAAG	1 cut(s)	1076
BstAUI	TGTACA	1 cut(s)	904
BstC8I	GCNNGC	7 cut(s)	72, 227, 297, 416, 735, 1024, 1036
BstDEI	CTNAG	5 cut(s)	149, 423, 501, 543, 888
BstF5I	GGATG	1 cut(s)	841
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	6 cut(s)	178, 205, 572, 595, 646, 754
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	6 cut(s)	175, 202, 569, 592, 643, 751
BstMWI	GCNNNNNNNGC	5 cut(s)	424, 719, 767, 857, 898
BstNSI	RCATGY	4 cut(s)	229, 310, 737, 995
BstSLI	GKGCMC	1 cut(s)	1054
BstV1I	GCAGC	1 cut(s)	943
BstV2I	GAAGAC	2 cut(s)	12, 119
BstX2I	RGATCY	3 cut(s)	569, 592, 643
BstYI	RGATCY	3 cut(s)	569, 592, 643
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	841
BtsIMutI	CAGTG	4 cut(s)	146, 420, 600, 1014
Cac8I	GCNNGC	7 cut(s)	72, 227, 297, 416, 735, 1024, 1036
CciI	TCATGA	2 cut(s)	355, 934
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	2 cut(s)	207, 665
CseI	GACGC	1 cut(s)	866
Csp6I	GTAC	2 cut(s)	286, 905
CviQI	GTAC	2 cut(s)	286, 905
DdeI	CTNAG	5 cut(s)	149, 423, 501, 543, 888
DpnI	GATC	6 cut(s)	177, 204, 571, 594, 645, 753
DpnII	GATC	6 cut(s)	175, 202, 569, 592, 643, 751
DriI	GACNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	81
Eam1105I	GACNNNNNGTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	943
Eco47I	GGWCC	2 cut(s)	207, 665
Eco57I	CTGAAG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	943
ErhI	CCWWGG	1 cut(s)	943
FalI	AAGNNNNNCTT	2 cut(s)	915, 947
FaqI	GGGAC	1 cut(s)	279
FauI	CCCGC	1 cut(s)	1027
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	957
FokI	GGATG	1 cut(s)	848
Fsp4HI	GCNGC	1 cut(s)	957
FspBI	CTAG	1 cut(s)	1023
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	957
GsuI	CTGGAG	1 cut(s)	705
HaeIII	GGCC	1 cut(s)	109
HgaI	GACGC	1 cut(s)	866
HhaI	GCGC	1 cut(s)	231
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	8 cut(s)	101, 169, 328, 491, 619, 626, 1007, 1072
HphI	GGTGA	3 cut(s)	110, 628, 866
Hpy188I	TCNGA	7 cut(s)	207, 313, 442, 460, 496, 889, 1098
Hpy188III	TCNNGA	6 cut(s)	173, 356, 488, 623, 647, 935
Hpy99I	CGWCG	2 cut(s)	31, 1050
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	6 cut(s)	70, 414, 656, 722, 872, 1064
HpyF10VI	GCNNNNNNNGC	5 cut(s)	424, 719, 767, 857, 898
HpyF3I	CTNAG	5 cut(s)	149, 423, 501, 543, 888
HpySE526I	ACGT	1 cut(s)	88
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	6 cut(s)	175, 202, 569, 592, 643, 751
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	686
Lsp1109I	GCAGC	1 cut(s)	943
LweI	GCATC	3 cut(s)	487, 838, 1009
MaeI	CTAG	1 cut(s)	1023
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	3 cut(s)	616, 854, 878
MalI	GATC	6 cut(s)	177, 204, 571, 594, 645, 753
MbiI	CCGCTC	1 cut(s)	1034
MboI	GATC	6 cut(s)	175, 202, 569, 592, 643, 751
MboII	GAAGA	6 cut(s)	12, 68, 124, 587, 857, 1010
MflI	RGATCY	3 cut(s)	569, 592, 643
MhlI	GDGCHC	1 cut(s)	1054
MluCI	AATT	9 cut(s)	12, 279, 389, 650, 818, 873, 926, 975, 1091
MlyI	GAGTC	4 cut(s)	110, 178, 322, 613
MnlI	CCTC	6 cut(s)	252, 496, 508, 774, 1077, 1099
MroXI	GAANNNNTTC	2 cut(s)	806, 930
MseI	TTAA	2 cut(s)	921, 1077
MslI	CAYNNNNRTG	2 cut(s)	559, 738
MspA1I	CMGCKG	1 cut(s)	471
MspCI	CTTAAG	1 cut(s)	1076
MwoI	GCNNNNNNNGC	5 cut(s)	424, 719, 767, 857, 898
NdeII	GATC	6 cut(s)	175, 202, 569, 592, 643, 751
NheI	GCTAGC	1 cut(s)	1022
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	2 cut(s)	616, 854
NspI	RCATGY	4 cut(s)	229, 310, 737, 995
PaeI	GCATGC	2 cut(s)	229, 737
PagI	TCATGA	2 cut(s)	355, 934
PciI	ACATGT	2 cut(s)	306, 991
PciSI	GCTCTTC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PdmI	GAANNNNTTC	2 cut(s)	806, 930
PfeI	GAWTC	4 cut(s)	491, 626, 1007, 1072
PflFI	GACNNNGTC	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	958
PleI	GAGTC	4 cut(s)	109, 177, 322, 613
PpsI	GAGTC	4 cut(s)	109, 177, 322, 613
PscI	ACATGT	2 cut(s)	306, 991
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	207, 665
PsuI	RGATCY	3 cut(s)	569, 592, 643
PsyI	GACNNNGTC	1 cut(s)	211
RsaI	GTAC	2 cut(s)	287, 906
RsaNI	GTAC	2 cut(s)	286, 905
RseI	CAYNNNNRTG	2 cut(s)	559, 738
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	921, 1077
SatI	GCNGC	1 cut(s)	957
Sau3AI	GATC	6 cut(s)	175, 202, 569, 592, 643, 751
Sau96I	GGNCC	2 cut(s)	207, 665
SchI	GAGTC	4 cut(s)	110, 178, 322, 613
SduI	GDGCHC	1 cut(s)	1054
SfaNI	GCATC	3 cut(s)	487, 838, 1009
SinI	GGWCC	2 cut(s)	207, 665
SmiMI	CAYNNNNRTG	2 cut(s)	559, 738
SmlI	CTYRAG	3 cut(s)	633, 1055, 1076
SmoI	CTYRAG	3 cut(s)	633, 1055, 1076
SphI	GCATGC	2 cut(s)	229, 737
Sse9I	AATT	9 cut(s)	12, 279, 389, 650, 818, 873, 926, 975, 1091
SsiI	CCGC	2 cut(s)	469, 1034
SspMI	CTAG	1 cut(s)	1023
StyI	CCWWGG	1 cut(s)	943
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	754, 996
TasI	AATT	9 cut(s)	12, 279, 389, 650, 818, 873, 926, 975, 1091
TatI	WGTACW	1 cut(s)	904
TfiI	GAWTC	4 cut(s)	491, 626, 1007, 1072
Tru1I	TTAA	2 cut(s)	921, 1077
Tru9I	TTAA	2 cut(s)	921, 1077
TscAI	CASTG	4 cut(s)	153, 427, 607, 1021
TseFI	GTSAC	2 cut(s)	616, 854
TseI	GCWGC	1 cut(s)	956
Tsp45I	GTSAC	2 cut(s)	616, 854
TspDTI	ATGAA	3 cut(s)	12, 756, 923
TspRI	CASTG	4 cut(s)	153, 427, 607, 1021
Tth111I	GACNNNGTC	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	1076
VpaK11BI	GGWCC	2 cut(s)	207, 665
XapI	RAATTY	4 cut(s)	389, 650, 818, 1091
XceI	RCATGY	4 cut(s)	229, 310, 737, 995
XmnI	GAANNNNTTC	2 cut(s)	806, 930
XspI	CTAG	1 cut(s)	1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.