Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003367

Physical Location & Seq

Genomic Coordinates Forward (+)

20385751 .. 20387475

Gene Structure 1725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G233900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCTAAGGCTTTCTCTGAGTTTCGGCCACTGGACGAGACATCCCTCATAGACTACATAAAATCTGTACCCTCTCTCTGTTCCAAGCTCCACAACAACCTCAACGGTTTGGAAATCAAAGAAGTAGGAGATGGCAACCTCAACTTCGTCTTCATCGTCGTTGGTTCTTCTGGTTCTTTTGTCATCAAGCAGGCTCTTACATACGTGCGTTCCGTAGGCGAGGCATGGCCAATGTCAAAAGACCGAGCCTATTTTGAAGCAGCGGCGCTGAAAAAACACGGTCATTTGTGTCCCGGCCACGTGCCTGAAGTTTATCATTTTGATCGCACTATGTCATTGATTGCAATGCGTTACTTGAAGCCTCCGCATATCATTCTGAGAAAAGGGTTGGTTGCTGGGATTGAGTACCCTCTGCTGGCGGAAGACATGTCGGATTATATGTCGAAGACTCTGTTTTACACTTCCCTCATTTACAATTCCACAACAGAGCACAAACAGGGTGTTGCTGAGTTTTGTGGGAATGTGGAGATGTGCAGGCTCACCGAGCAGGTCGTCTTTTCTGATCCTTATAAAGTTTCTAAATATAATCGATGGACCTCTCCTTATCTTGATTCTGATGCTGCGGCTCTGAGGGAAGATGAGGCTTTGAAGATTGAGGTTGCTGAGTTGAAATCTCTCTTCTGTGAGAGAGCCCAAGCTCTGATACATGGAGATCTTCATACCAGTTCTGTAATGGTGACCCAAGAATCAACCCAAGTTATAGACTCTGAATTTGCATTTTATGGGCCAATGGGTTTTGATGTTGGTGCTTTTCTGGGCAACTTGATTTTGGCTTTTTTTGCACAAGATGGGCATGCGGATGAAAAGAATGATAGAGAAGCATACAAAGGTTGGATTTTGAGGACAATTGAGAACACTTGGAATCTTTTTCAGAACAAGTTTATAGCTCTGTGGGATCAGCACAAAGATGGTTCTGGTGAGGCCTATCTGCCTGCGATTTACAACAGCTCTGAGATTCAGCAGCTTGTGCAAAAGAAATTTATGGAAGATTTGTTTCATGACACCCTGGGATTTGGTGCTGCCAAGATGATAAGGAGAATTGTCGGAGTGGCGCATGTTGAGGATTTTGAGGCGATAAGTGATGCTAGCAAACGGGCGGGTTGCGAGCGAAGGGCTCTTGAGTTGGCAAAGCTGCTTCTCAATGAGAGGCGAAAATTTCAGAACATTGCTCAAGTTGTTTCAGCCATTAAACAAGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019509 GO:0019752 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042802 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046522 GO:0050896 GO:0051716 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

APH

Protein Analysis

421

Amino Acids

47.4

Weight (kDa)

6.04

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49820
fragaria_vesca	FvH4_2g05040
malus_domestica	MD10G1098200.v1.1 MD10G1098700.v1.1 MD10G1147300.v1.1
prunus_persica	Prupe.7G233900_v2.0.a1 Prupe.8G136000_v2.0.a1
pyrus_communis	pycom10g08390
rosa_chinensis	RchiOBHm_Chr2g0122061 RchiOBHm_Chr6g0254911 RchiOBHm_Chr6g0254921
rosa_laevigata	RLG00000014878 RLG00000014883
rosa_multiflora	Rmu_sc0000016.1_g000011 Rmu_sc0003880.1_g000001 Rmu_sc0010925.1_g000019
rosa_roxburghii	Rroxscaffold_2G00122040 Rroxscaffold_7G00210480
rosa_rugosa	Rorug02G0236200 Rorug02G0236300 Rorug05G0555300
rosa_samantha	Rh2AG292600 Rh2BG303200 Rh2CG281700 Rh2DG316800 Rh6AG072700 Rh6BG064800 Rh6BG065000 Rh6CG063900 Rh6CG064800 Rh6DG061000 Rh6DG061800
rosa_wichuraiana	Rw0G002700 Rw2G023480 Rw6G006330 Rw6G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
Acc36I	ACCTGC	1 cut(s)	538
AciI	CCGC	6 cut(s)	263, 365, 419, 623, 857, 1157
AclWI	GGATC	2 cut(s)	557, 963
AcoI	YGGCCR	3 cut(s)	26, 227, 295
AcsI	RAATTY	3 cut(s)	770, 1037, 1214
AcuI	CTGAAG	1 cut(s)	327
AcvI	CACGTG	1 cut(s)	301
AfaI	GTAC	2 cut(s)	69, 407
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	4 cut(s)	257, 358, 649, 670
AjnI	CCWGG	1 cut(s)	1065
AluBI	AGCT	6 cut(s)	88, 698, 947, 1008, 1024, 1192
AluI	AGCT	6 cut(s)	88, 698, 947, 1008, 1024, 1192
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	2 cut(s)	557, 963
AoxI	GGCC	5 cut(s)	26, 227, 295, 785, 981
ApeKI	GCWGC	5 cut(s)	260, 620, 1021, 1079, 1192
ApoI	RAATTY	3 cut(s)	770, 1037, 1214
ArsI	GACNNNNNNTTYG	2 cut(s)	755, 787
AspLEI	GCGC	2 cut(s)	268, 1114
AspS9I	GGNCC	2 cut(s)	594, 785
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	3 cut(s)	532, 748, 989
AsuNHI	GCTAGC	1 cut(s)	1145
AvaII	GGWCC	1 cut(s)	594
BalI	TGGCCA	1 cut(s)	229
BanII	GRGCYC	2 cut(s)	694, 1177
BbrPI	CACGTG	1 cut(s)	301
BbsI	GAAGAC	3 cut(s)	142, 429, 452
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	5 cut(s)	272, 607, 1033, 1066, 1179
BccI	CCATC	4 cut(s)	125, 585, 842, 962
BciT130I	CCWGG	1 cut(s)	1067
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	1146
BfoI	RGCGCY	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	538
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	7 cut(s)	261, 264, 621, 624, 1022, 1080, 1193
BlsI	GCNGC	7 cut(s)	262, 265, 622, 625, 1023, 1081, 1194
Bme1390I	CCNGG	2 cut(s)	294, 1067
Bme18I	GGWCC	1 cut(s)	594
BmgT120I	GGNCC	2 cut(s)	594, 785
BmrFI	CCNGG	2 cut(s)	294, 1067
BmsI	GCATC	2 cut(s)	607, 1132
BmtI	GCTAGC	1 cut(s)	1149
BpiI	GAAGAC	3 cut(s)	142, 429, 452
Bpu10I	CCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	2 cut(s)	1199, 1215
BpuMI	CCSGG	1 cut(s)	294
Bsa29I	ATCGAT	1 cut(s)	589
BsaAI	YACGTR	2 cut(s)	205, 301
BsaJI	CCNNGG	2 cut(s)	1065, 1066
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	2 cut(s)	36, 723
Bse3DI	GCAATG	2 cut(s)	351, 1224
BseBI	CCWGG	1 cut(s)	1067
BseCI	ATCGAT	1 cut(s)	589
BseDI	CCNNGG	2 cut(s)	1065, 1066
BseGI	GGATG	2 cut(s)	41, 865
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMI	GCAATG	2 cut(s)	351, 1224
BseMII	CTCAG	6 cut(s)	9, 368, 498, 620, 654, 1002
BseNI	ACTGG	2 cut(s)	36, 723
BseXI	GCAGC	5 cut(s)	272, 607, 1033, 1066, 1179
BseYI	CCCAGC	1 cut(s)	395
BsgI	GTGCAG	1 cut(s)	553
BshFI	GGCC	5 cut(s)	28, 229, 297, 787, 983
BshVI	ATCGAT	1 cut(s)	589
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	5 cut(s)	28, 229, 297, 787, 983
Bsp1286I	GDGCHC	3 cut(s)	492, 694, 1177
Bsp143I	GATC	4 cut(s)	322, 562, 712, 955
BspACI	CCGC	6 cut(s)	263, 365, 419, 623, 857, 1157
BspANI	GGCC	5 cut(s)	28, 229, 297, 787, 983
BspCNI	CTCAG	6 cut(s)	10, 369, 499, 621, 655, 1003
BspDI	ATCGAT	1 cut(s)	589
BspHI	TCATGA	1 cut(s)	1057
BspMI	ACCTGC	1 cut(s)	538
BspOI	GCTAGC	1 cut(s)	1149
BspPI	GGATC	2 cut(s)	557, 963
BsrDI	GCAATG	2 cut(s)	351, 1224
BsrI	ACTGG	2 cut(s)	36, 723
BssECI	CCNNGG	2 cut(s)	1065, 1066
BssMI	GATC	4 cut(s)	322, 562, 712, 955
Bst2UI	CCWGG	1 cut(s)	1067
Bst4CI	ACNGT	2 cut(s)	107, 281
Bst6I	CTCTTC	1 cut(s)	683
BstAPI	GCANNNNNTGC	1 cut(s)	1027
BstBAI	YACGTR	2 cut(s)	205, 301
BstC8I	GCNNGC	7 cut(s)	192, 417, 536, 855, 993, 1147, 1166
BstDEI	CTNAG	7 cut(s)	6, 18, 377, 507, 629, 663, 1011
BstEII	GGTNACC	1 cut(s)	736
BstF5I	GGATG	2 cut(s)	41, 865
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	268, 1114
BstKTI	GATC	4 cut(s)	325, 565, 715, 958
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	4 cut(s)	322, 562, 712, 955
BstMWI	GCNNNNNNNGC	3 cut(s)	544, 839, 1027
BstNI	CCWGG	1 cut(s)	1067
BstNSI	RCATGY	3 cut(s)	430, 857, 1118
BstPI	GGTNACC	1 cut(s)	736
BstSCI	CCNGG	2 cut(s)	292, 1065
BstV1I	GCAGC	5 cut(s)	272, 607, 1033, 1066, 1179
BstV2I	GAAGAC	3 cut(s)	142, 429, 452
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
Bsu15I	ATCGAT	1 cut(s)	589
BsuRI	GGCC	5 cut(s)	28, 229, 297, 787, 983
BsuTUI	ATCGAT	1 cut(s)	589
BtsCI	GGATG	2 cut(s)	41, 865
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	7 cut(s)	192, 417, 536, 855, 993, 1147, 1166
CciI	TCATGA	1 cut(s)	1057
CfoI	GCGC	2 cut(s)	268, 1114
Cfr13I	GGNCC	2 cut(s)	594, 785
ClaI	ATCGAT	1 cut(s)	589
Csp6I	GTAC	2 cut(s)	68, 406
CviAII	CATG	6 cut(s)	225, 427, 707, 854, 1058, 1115
CviQI	GTAC	2 cut(s)	68, 406
DdeI	CTNAG	7 cut(s)	6, 18, 377, 507, 629, 663, 1011
DpnI	GATC	4 cut(s)	324, 564, 714, 957
DpnII	GATC	4 cut(s)	322, 562, 712, 955
EaeI	YGGCCR	3 cut(s)	26, 227, 295
Eam1104I	CTCTTC	1 cut(s)	683
EarI	CTCTTC	1 cut(s)	683
EciI	GGCGGA	1 cut(s)	434
Eco147I	AGGCCT	1 cut(s)	983
Eco24I	GRGCYC	2 cut(s)	694, 1177
Eco47I	GGWCC	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	327
Eco72I	CACGTG	1 cut(s)	301
Eco91I	GGTNACC	1 cut(s)	736
EcoO65I	GGTNACC	1 cut(s)	736
EcoRII	CCWGG	1 cut(s)	1065
EcoT38I	GRGCYC	2 cut(s)	694, 1177
FaeI	CATG	6 cut(s)	228, 430, 710, 857, 1061, 1118
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	6 cut(s)	224, 426, 706, 853, 1057, 1114
FauI	CCCGC	1 cut(s)	1150
Fnu4HI	GCNGC	7 cut(s)	261, 264, 621, 624, 1022, 1080, 1193
FokI	GGATG	2 cut(s)	28, 872
FriOI	GRGCYC	2 cut(s)	694, 1177
Fsp4HI	GCNGC	7 cut(s)	261, 264, 621, 624, 1022, 1080, 1193
FspBI	CTAG	1 cut(s)	1146
GlaI	GCGC	2 cut(s)	267, 1113
GluI	GCNGC	7 cut(s)	261, 264, 621, 624, 1022, 1080, 1193
GsaI	CCCAGC	1 cut(s)	399
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	5 cut(s)	28, 229, 297, 787, 983
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	2 cut(s)	268, 1114
Hin1II	CATG	6 cut(s)	228, 430, 710, 857, 1061, 1118
Hin6I	GCGC	2 cut(s)	266, 1112
HinP1I	GCGC	2 cut(s)	266, 1112
HinfI	GANTC	6 cut(s)	448, 611, 746, 764, 922, 1015
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	3 cut(s)	532, 748, 989
Hpy188III	TCNNGA	3 cut(s)	608, 1058, 1178
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	1164
HpyCH4III	ACNGT	2 cut(s)	107, 281
HpyCH4IV	ACGT	2 cut(s)	204, 300
HpyCH4V	TGCA	5 cut(s)	344, 534, 776, 842, 1030
HpyF10VI	GCNNNNNNNGC	3 cut(s)	544, 839, 1027
HpyF3I	CTNAG	7 cut(s)	6, 18, 377, 507, 629, 663, 1011
HpySE526I	ACGT	2 cut(s)	204, 300
Hsp92II	CATG	6 cut(s)	228, 430, 710, 857, 1061, 1118
HspAI	GCGC	2 cut(s)	266, 1112
Kzo9I	GATC	4 cut(s)	322, 562, 712, 955
LmnI	GCTCC	1 cut(s)	93
Lsp1109I	GCAGC	5 cut(s)	272, 607, 1033, 1066, 1179
LweI	GCATC	2 cut(s)	607, 1132
MaeI	CTAG	1 cut(s)	1146
MaeII	ACGT	2 cut(s)	204, 300
MaeIII	GTNAC	2 cut(s)	350, 736
MalI	GATC	4 cut(s)	324, 564, 714, 957
MboI	GATC	4 cut(s)	322, 562, 712, 955
MboII	GAAGA	9 cut(s)	142, 159, 434, 457, 647, 661, 670, 707, 1058
MfeI	CAATTG	1 cut(s)	906
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	3 cut(s)	492, 694, 1177
MlsI	TGGCCA	1 cut(s)	229
MluCI	AATT	6 cut(s)	475, 770, 906, 1037, 1098, 1214
MluNI	TGGCCA	1 cut(s)	229
MlyI	GAGTC	2 cut(s)	442, 758
MmeI	TCCRAC	3 cut(s)	411, 872, 1084
Mox20I	TGGCCA	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	229
MseI	TTAA	1 cut(s)	1248
MslI	CAYNNNNRTG	2 cut(s)	858, 966
Msp20I	TGGCCA	1 cut(s)	229
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	2 cut(s)	294, 1067
MunI	CAATTG	1 cut(s)	906
MvaI	CCWGG	1 cut(s)	1067
MwoI	GCNNNNNNNGC	3 cut(s)	544, 839, 1027
NciI	CCSGG	1 cut(s)	294
NdeII	GATC	4 cut(s)	322, 562, 712, 955
NheI	GCTAGC	1 cut(s)	1145
NlaIII	CATG	6 cut(s)	228, 430, 710, 857, 1061, 1118
NmuCI	GTSAC	1 cut(s)	736
NspI	RCATGY	3 cut(s)	430, 857, 1118
PaeI	GCATGC	1 cut(s)	857
PagI	TCATGA	1 cut(s)	1057
PasI	CCCWGGG	1 cut(s)	1066
PceI	AGGCCT	1 cut(s)	983
PciI	ACATGT	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 210
PfeI	GAWTC	4 cut(s)	611, 746, 922, 1015
PkrI	GCNGC	7 cut(s)	262, 265, 622, 625, 1023, 1081, 1194
PleI	GAGTC	2 cut(s)	442, 758
PmaCI	CACGTG	1 cut(s)	301
PmlI	CACGTG	1 cut(s)	301
PpsI	GAGTC	2 cut(s)	442, 758
Ppu21I	YACGTR	2 cut(s)	205, 301
PscI	ACATGT	1 cut(s)	426
PsiI	TTATAA	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	1065
PspCI	CACGTG	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	736
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	1065
PspPI	GGNCC	2 cut(s)	594, 785
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	2 cut(s)	69, 407
RsaNI	GTAC	2 cut(s)	68, 406
RseI	CAYNNNNRTG	2 cut(s)	858, 966
SaqAI	TTAA	1 cut(s)	1248
SatI	GCNGC	7 cut(s)	261, 264, 621, 624, 1022, 1080, 1193
Sau3AI	GATC	4 cut(s)	322, 562, 712, 955
Sau96I	GGNCC	2 cut(s)	594, 785
SchI	GAGTC	2 cut(s)	442, 758
ScrFI	CCNGG	2 cut(s)	294, 1067
SduI	GDGCHC	3 cut(s)	492, 694, 1177
SfaNI	GCATC	2 cut(s)	607, 1132
SinI	GGWCC	1 cut(s)	594
SmiMI	CAYNNNNRTG	2 cut(s)	858, 966
SmlI	CTYRAG	2 cut(s)	1178, 1230
SmoI	CTYRAG	2 cut(s)	1178, 1230
SphI	GCATGC	1 cut(s)	857
Sse9I	AATT	6 cut(s)	475, 770, 906, 1037, 1098, 1214
SseBI	AGGCCT	1 cut(s)	983
SsiI	CCGC	6 cut(s)	263, 365, 419, 623, 857, 1157
SspMI	CTAG	1 cut(s)	1146
StuI	AGGCCT	1 cut(s)	983
StyD4I	CCNGG	2 cut(s)	292, 1065
TaaI	ACNGT	2 cut(s)	107, 281
TaiI	ACGT	2 cut(s)	207, 303
TaqI	TCGA	2 cut(s)	443, 589
TaqII	GACCGA	1 cut(s)	258
TasI	AATT	6 cut(s)	475, 770, 906, 1037, 1098, 1214
TauI	GCSGC	2 cut(s)	266, 626
TfiI	GAWTC	4 cut(s)	611, 746, 922, 1015
Tru1I	TTAA	1 cut(s)	1248
Tru9I	TTAA	1 cut(s)	1248
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	5 cut(s)	260, 620, 1021, 1079, 1192
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	4 cut(s)	142, 707, 876, 1046
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	594
XapI	RAATTY	3 cut(s)	770, 1037, 1214
XceI	RCATGY	3 cut(s)	430, 857, 1118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XspI	CTAG	1 cut(s)	1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.