Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006785

Physical Location & Seq

Genomic Coordinates Reverse (-)

18515059 .. 18517290

Gene Structure 2232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGATGAGAGCGCTAGCGGCGGCTTCACGGCCACTGTTTTCCGATTTGCCGAGTCTCGTTCGTTCATGGCTTCCGACTTCTAGCTTCAAATCGTTTGCTACTGTATCTTCGTCTCCTCCGTCGGATTTGAATCTCCGGAATCAATCTCGCGGTGGCCTTCCTCGATTCTTTTCCGATGATCTTCCATCTCGCAAGGGTGGAGTTGTTCGTGTTCAAGGCTCTGAGTTTTGGCATATGGCTAAAGTTCTTAGACTGAAACAGGAGGACAGGGTAGAACTCTTTAATGGCAAAGGGGGTCTAGTAGAAGGCTGTATACAAAGCATAGACAAAACTGGAGTTGATTTTATCGCACAAGAAGATCAGAAGGTGATTCTTCCTCAGGGCATGCAGTGGCAGGTGTTTGCAGCTTTTGGAACTTTGAAGGGTGGTCGAGCGGATTGGCTAATTGAGAAATGTACAGAACTCGGAGCGAGCAGTGTCACACCACTTTTAACGGAAAGATCACCCATAATCTCTGAAAACCGGGTCGATAGATTGGAACGCGTTAGTTTTGCTGCAGCTAAGCAATGCCAAAGACTTCATCAAATGGTACTGAACCCTCCAATCAAATTTGGTACCCTCTTGGATCATATTTTGAAGTCAAAGTTATGTTTGGTTGCTACAGCCGAAGCTAAACCTCTTCTTAATGCAGTAAACTCCTCAGCAAAAGAATCCAGCGGACTATTAATCGTTGGACCAGAAGGCGACTTTACGAAGAAAGAGGTGGAGATGATGTTGGAAGCAGGCGGCACAGCAGTTGGACTGGGGCCACACCGGTTGCGAGTTGAGACCGCAACCATTGCTCTTTTGGCAACTCTAGTGATGTGGTCTGACTCTCAAGAGATGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

296

Amino Acids

32.33

Weight (kDa)

8.9

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA_4	PF20260	72 - 115	4.5e-13	RNA methyltransferase PUA domain
Methyltrans_RNA	PF04452	132 - 209	2.2e-16	RNA methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50000 AT1G50000 AT1G50000 AT1G50000 AT1G50000
fragaria_vesca	FvH4_2g03440 FvH4_2g03440 FvH4_2g03440 FvH4_2g03440
malus_domestica	MD10G1109100.v1.1
prunus_persica	Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1
pyrus_communis	pycom10g09440
rosa_chinensis	RchiOBHm_Chr6g0248601
rosa_laevigata	RLG00000015140
rosa_multiflora	Rmu_sc0002553.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213180
rosa_rugosa	Rorug05G0532400 Rorug05G0532400
rosa_samantha	Rh6AG049300 Rh6BG045100 Rh6CG041300 Rh6DG037600
rosa_wichuraiana	Rw6G004260 Rw6G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	385
Acc36I	ACCTGC	1 cut(s)	385
Acc65I	GGTACC	1 cut(s)	614
AccB1I	GGYRCC	1 cut(s)	614
AccBSI	CCGCTC	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	313
AccII	CGCG	2 cut(s)	150, 543
AccIII	TCCGGA	1 cut(s)	135
AciI	CCGC	7 cut(s)	17, 20, 150, 434, 717, 786, 831
AclWI	GGATC	1 cut(s)	633
AcoI	YGGCCR	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	608
AfaI	GTAC	3 cut(s)	457, 591, 616
AfeI	AGCGCT	1 cut(s)	12
AflIII	ACRYGT	1 cut(s)	541
AgeI	ACCGGT	1 cut(s)	813
AgsI	TTSAA	5 cut(s)	88, 130, 215, 421, 637
AluBI	AGCT	4 cut(s)	84, 407, 560, 671
AluI	AGCT	4 cut(s)	84, 407, 560, 671
Alw26I	GTCTC	3 cut(s)	59, 117, 821
AlwI	GGATC	1 cut(s)	633
Aor13HI	TCCGGA	1 cut(s)	135
Aor51HI	AGCGCT	1 cut(s)	12
AoxI	GGCC	3 cut(s)	29, 154, 806
ApeKI	GCWGC	3 cut(s)	404, 554, 557
ApoI	RAATTY	1 cut(s)	608
AseI	ATTAAT	1 cut(s)	725
AsiGI	ACCGGT	1 cut(s)	813
Asp718I	GGTACC	1 cut(s)	614
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	734, 806
AsuC2I	CCSGG	1 cut(s)	524
AsuHPI	GGTGA	2 cut(s)	379, 495
AsuNHI	GCTAGC	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	734
AxyI	CCTNAGG	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	614
BarI	GAAGNNNNNNTAC	2 cut(s)	297, 329
BbvCI	CCTCAGC	1 cut(s)	700
BbvI	GCAGC	3 cut(s)	416, 541, 569
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	44
BcnI	CCSGG	1 cut(s)	524
BcoDI	GTCTC	3 cut(s)	59, 117, 821
BfaI	CTAG	4 cut(s)	14, 81, 299, 857
BfmI	CTRYAG	2 cut(s)	555, 660
BfoI	RGCGCY	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	385
BisI	GCNGC	6 cut(s)	18, 21, 405, 555, 558, 787
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	6 cut(s)	19, 22, 406, 556, 559, 788
Bme1390I	CCNGG	1 cut(s)	524
Bme18I	GGWCC	1 cut(s)	734
BmgT120I	GGNCC	2 cut(s)	734, 806
BmiI	GGNNCC	2 cut(s)	616, 807
BmrFI	CCNGG	1 cut(s)	524
BmrI	ACTGGG	1 cut(s)	812
BmtI	GCTAGC	1 cut(s)	17
BmuI	ACTGGG	1 cut(s)	812
BpmI	CTGGAG	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	700
Bpu1102I	GCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	861
BpuMI	CCSGG	1 cut(s)	524
BsaBI	GATNNNNATC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	821
BsaWI	WCCGGW	2 cut(s)	135, 813
BsaXI	ACNNNNNCTCC	2 cut(s)	758, 788
Bse118I	RCCGGY	1 cut(s)	813
Bse1I	ACTGG	2 cut(s)	337, 807
Bse21I	CCTNAGG	1 cut(s)	378
Bse3DI	GCAATG	2 cut(s)	572, 837
Bse8I	GATNNNNATC	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	135
BseJI	GATNNNNATC	1 cut(s)	129
BseMI	GCAATG	2 cut(s)	572, 837
BseMII	CTCAG	3 cut(s)	213, 392, 714
BseNI	ACTGG	2 cut(s)	337, 807
BseRI	GAGGAG	2 cut(s)	105, 688
BseXI	GCAGC	3 cut(s)	416, 541, 569
Bsh1236I	CGCG	2 cut(s)	150, 543
BshFI	GGCC	3 cut(s)	31, 156, 808
BshNI	GGYRCC	1 cut(s)	614
BshTI	ACCGGT	1 cut(s)	813
BsiSI	CCGG	3 cut(s)	136, 523, 814
BsmAI	GTCTC	3 cut(s)	59, 117, 821
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	3 cut(s)	31, 156, 808
Bso31I	GGTCTC	1 cut(s)	821
Bsp13I	TCCGGA	1 cut(s)	135
Bsp1407I	TGTACA	1 cut(s)	455
Bsp143I	GATC	5 cut(s)	178, 358, 500, 625, 885
Bsp1720I	GCTNAGC	1 cut(s)	561
BspACI	CCGC	7 cut(s)	17, 20, 150, 434, 717, 786, 831
BspANI	GGCC	3 cut(s)	31, 156, 808
BspCNI	CTCAG	3 cut(s)	214, 391, 713
BspEI	TCCGGA	1 cut(s)	135
BspFNI	CGCG	2 cut(s)	150, 543
BspLI	GGNNCC	2 cut(s)	616, 807
BspMAI	CTGCAG	1 cut(s)	559
BspMI	ACCTGC	1 cut(s)	385
BspOI	GCTAGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	821
BsrBI	CCGCTC	1 cut(s)	434
BsrDI	GCAATG	2 cut(s)	572, 837
BsrFI	RCCGGY	1 cut(s)	813
BsrGI	TGTACA	1 cut(s)	455
BsrI	ACTGG	2 cut(s)	337, 807
BssAI	RCCGGY	1 cut(s)	813
BssMI	GATC	5 cut(s)	178, 358, 500, 625, 885
BssNAI	GTATAC	1 cut(s)	314
Bst1107I	GTATAC	1 cut(s)	314
Bst4CI	ACNGT	2 cut(s)	36, 103
Bst6I	CTCTTC	1 cut(s)	684
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstAUI	TGTACA	1 cut(s)	455
BstC8I	GCNNGC	4 cut(s)	15, 386, 472, 784
BstDEI	CTNAG	5 cut(s)	222, 248, 378, 561, 700
BstFNI	CGCG	2 cut(s)	150, 543
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	5 cut(s)	181, 361, 503, 628, 888
BstMAI	GTCTC	3 cut(s)	59, 117, 821
BstMBI	GATC	5 cut(s)	178, 358, 500, 625, 885
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 839, 848
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	1 cut(s)	522
BstSFI	CTRYAG	2 cut(s)	555, 660
BstUI	CGCG	2 cut(s)	150, 543
BstV1I	GCAGC	3 cut(s)	416, 541, 569
BstZ17I	GTATAC	1 cut(s)	314
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	3 cut(s)	31, 156, 808
BtsI	GCAGTG	2 cut(s)	395, 481
BtsIMutI	CAGTG	3 cut(s)	32, 395, 481
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	4 cut(s)	15, 386, 472, 784
CfoI	GCGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	813
Cfr13I	GGNCC	2 cut(s)	734, 806
Csp6I	GTAC	3 cut(s)	456, 590, 615
CspAI	ACCGGT	1 cut(s)	813
CspCI	CAANNNNNGTGG	2 cut(s)	798, 833
CviAII	CATG	2 cut(s)	66, 385
CviQI	GTAC	3 cut(s)	456, 590, 615
DdeI	CTNAG	5 cut(s)	222, 248, 378, 561, 700
DpnI	GATC	5 cut(s)	180, 360, 502, 627, 887
DpnII	GATC	5 cut(s)	178, 358, 500, 625, 885
EaeI	YGGCCR	1 cut(s)	29
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	821
Eco47I	GGWCC	1 cut(s)	734
Eco47III	AGCGCT	1 cut(s)	12
Eco81I	CCTNAGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	2 cut(s)	69, 388
FaiI	YATR	9 cut(s)	67, 234, 236, 314, 323, 386, 509, 630, 649
FatI	CATG	2 cut(s)	65, 384
FauNDI	CATATG	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	6 cut(s)	18, 21, 405, 555, 558, 787
Fsp4HI	GCNGC	6 cut(s)	18, 21, 405, 555, 558, 787
FspBI	CTAG	4 cut(s)	14, 81, 299, 857
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	6 cut(s)	18, 21, 405, 555, 558, 787
GsuI	CTGGAG	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	31, 156, 808
HapII	CCGG	3 cut(s)	136, 523, 814
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	69, 388
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	7 cut(s)	52, 130, 139, 165, 370, 710, 872
HpaII	CCGG	3 cut(s)	136, 523, 814
HphI	GGTGA	2 cut(s)	379, 495
Hpy166II	GTNNAC	2 cut(s)	314, 694
Hpy188I	TCNGA	9 cut(s)	43, 75, 124, 175, 223, 363, 467, 517, 871
Hpy188III	TCNNGA	2 cut(s)	136, 878
Hpy8I	GTNNAC	2 cut(s)	314, 694
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	5 cut(s)	167, 299, 358, 415, 734
HpyCH4III	ACNGT	2 cut(s)	36, 103
HpyCH4V	TGCA	4 cut(s)	388, 404, 557, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 839, 848
HpyF3I	CTNAG	5 cut(s)	222, 248, 378, 561, 700
Hsp92II	CATG	2 cut(s)	69, 388
HspAI	GCGC	1 cut(s)	11
Kpn2I	TCCGGA	1 cut(s)	135
KpnI	GGTACC	1 cut(s)	618
Kzo9I	GATC	5 cut(s)	178, 358, 500, 625, 885
LmnI	GCTCC	1 cut(s)	467
Lsp1109I	GCAGC	3 cut(s)	416, 541, 569
MaeI	CTAG	4 cut(s)	14, 81, 299, 857
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	5 cut(s)	180, 360, 502, 627, 887
MbiI	CCGCTC	1 cut(s)	434
MboI	GATC	5 cut(s)	178, 358, 500, 625, 885
MboII	GAAGA	6 cut(s)	99, 173, 365, 368, 671, 766
MluCI	AATT	2 cut(s)	444, 608
MluI	ACGCGT	1 cut(s)	541
MlyI	GAGTC	2 cut(s)	61, 866
MmeI	TCCRAC	5 cut(s)	98, 102, 712, 756, 778
MnlI	CCTC	9 cut(s)	126, 171, 256, 387, 609, 629, 687, 709, 754
MroI	TCCGGA	1 cut(s)	135
MseI	TTAA	4 cut(s)	282, 491, 684, 725
MspA1I	CMGCKG	1 cut(s)	717
MspI	CCGG	3 cut(s)	136, 523, 814
MspR9I	CCNGG	1 cut(s)	524
MvnI	CGCG	2 cut(s)	150, 543
MwoI	GCNNNNNNNGC	3 cut(s)	17, 839, 848
NciI	CCSGG	1 cut(s)	524
NdeI	CATATG	1 cut(s)	234
NdeII	GATC	5 cut(s)	178, 358, 500, 625, 885
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	69, 388
NlaIV	GGNNCC	2 cut(s)	616, 807
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	478
NspI	RCATGY	1 cut(s)	388
PaeI	GCATGC	1 cut(s)	388
PaqCI	CACCTGC	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PfeI	GAWTC	5 cut(s)	130, 139, 165, 370, 710
PinAI	ACCGGT	1 cut(s)	813
PkrI	GCNGC	6 cut(s)	19, 22, 406, 556, 559, 788
PleI	GAGTC	2 cut(s)	60, 866
PpsI	GAGTC	2 cut(s)	60, 866
PshBI	ATTAAT	1 cut(s)	725
PspN4I	GGNNCC	2 cut(s)	616, 807
PspPI	GGNCC	2 cut(s)	734, 806
PstI	CTGCAG	1 cut(s)	559
RsaI	GTAC	3 cut(s)	457, 591, 616
RsaNI	GTAC	3 cut(s)	456, 590, 615
SaqAI	TTAA	4 cut(s)	282, 491, 684, 725
SatI	GCNGC	6 cut(s)	18, 21, 405, 555, 558, 787
Sau3AI	GATC	5 cut(s)	178, 358, 500, 625, 885
Sau96I	GGNCC	2 cut(s)	734, 806
SchI	GAGTC	2 cut(s)	61, 866
ScrFI	CCNGG	1 cut(s)	524
SetI	ASST	8 cut(s)	86, 369, 399, 409, 562, 673, 679, 765
SfcI	CTRYAG	2 cut(s)	555, 660
SinI	GGWCC	1 cut(s)	734
SmlI	CTYRAG	1 cut(s)	876
SmoI	CTYRAG	1 cut(s)	876
SphI	GCATGC	1 cut(s)	388
Sse9I	AATT	2 cut(s)	444, 608
SsiI	CCGC	7 cut(s)	17, 20, 150, 434, 717, 786, 831
SspMI	CTAG	4 cut(s)	14, 81, 299, 857
StyD4I	CCNGG	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	36, 103
TaqI	TCGA	3 cut(s)	163, 430, 528
TasI	AATT	2 cut(s)	444, 608
TatI	WGTACW	1 cut(s)	455
TauI	GCSGC	3 cut(s)	20, 23, 789
TfiI	GAWTC	5 cut(s)	130, 139, 165, 370, 710
Tru1I	TTAA	4 cut(s)	282, 491, 684, 725
Tru9I	TTAA	4 cut(s)	282, 491, 684, 725
TscAI	CASTG	3 cut(s)	39, 395, 481
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	3 cut(s)	404, 554, 557
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	54, 569
TspGWI	ACGGA	2 cut(s)	108, 509
TspRI	CASTG	3 cut(s)	39, 395, 481
VpaK11BI	GGWCC	1 cut(s)	734
VspI	ATTAAT	1 cut(s)	725
XapI	RAATTY	1 cut(s)	608
XceI	RCATGY	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	844
XmiI	GTMKAC	1 cut(s)	313
XspI	CTAG	4 cut(s)	14, 81, 299, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.