Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006785

Physical Location & Seq

Genomic Coordinates Forward (+)

3905737 .. 3908730

Gene Structure 2994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG037600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCAGAGCCTAGCACCAATACGACCCCGTTTCGCGAGGTGCCTCCCAACCTTTCGAGCATTCTCTTCTTCTTCTTCTTCAGATTACTCCAACCAGTCCCGCGGTGGCCTCCCTCGCTTCTTCTCCGAACGCCTCCCTTCTTCCAAGGGAGGCCTAGTTCGTGTTCAAGATGATGAGTTCTGGCACATGACTAAAGTCTTGAGATTGCGCGCCAACGATAGGGTAGAGCTGTTTAATGGGAAAGGAGGCTTGGTAGAAGGTGTCATACAGACGGTGGACCGGTCCGGGCTAGATTTTGTGGCCTTGGAAGATCCAAAGATGGTTCTTCCACAGAGCACCCAGTGGCATGTGTTTGCAGCTTTTGGTACTTTGAAGGGCGGTCGAGCTGATTGGCTTGTTGAGAAATGCACGGAGCTGGGGGCTAGTAGTGTAACTCCTCTGCTGACAGAACGTTCTCCTACTATCTCAGAAAATCGGCTGGATAGGTTGCAGAGAGTCAATATGGCAGCTGCTAAACAATGTCAACGGCTCCATGAAATGGTATTGAATCCCCCAATGAAATTTGATCGTCTTTTGCCCCTTGTTGCACAGTCCAAGCTATCTTTTTTGGCGGTTGCAGAAGCTACTCCTCTTGTTACTGCATTAACTTCGTCAAGAAGGGAGACCAGTGGGCTGATTGTGGTTGGACCAGAAGGCGACTTCACGGAGAAAGAGGTGTATGAATTGATAAAAGCTGGGTCAATCTCTGTTGGTCTTGGCCCACATCGACTCCGGGTAGAAACTGCTACAGTGGCTCTTCTGGCAACTCTGATGTTATGGTCTGATTCTCAAGAAAAGTGTGGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

282

Amino Acids

31.09

Weight (kDa)

9.13

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA_4	PF20260	56 - 100	2.4e-12	RNA methyltransferase PUA domain
Methyltrans_RNA	PF04452	115 - 270	1.2e-37	RNA methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50000 AT1G50000 AT1G50000 AT1G50000 AT1G50000
fragaria_vesca	FvH4_2g03440 FvH4_2g03440 FvH4_2g03440 FvH4_2g03440
malus_domestica	MD10G1109100.v1.1
prunus_persica	Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1
pyrus_communis	pycom10g09440
rosa_chinensis	RchiOBHm_Chr6g0248601
rosa_laevigata	RLG00000015140
rosa_multiflora	Rmu_sc0002553.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213180
rosa_rugosa	Rorug05G0532400 Rorug05G0532400
rosa_samantha	Rh6AG049300 Rh6BG045100 Rh6CG041300 Rh6DG037600
rosa_wichuraiana	Rw6G004260 Rw6G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	538
AccII	CGCG	3 cut(s)	35, 102, 210
AciI	CCGC	4 cut(s)	100, 102, 378, 611
AclI	AACGTT	1 cut(s)	451
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	560
AcuI	CTGAAG	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	342
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	219, 538
AgeI	ACCGGT	1 cut(s)	279
AgsI	TTSAA	3 cut(s)	167, 373, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	8 cut(s)	229, 359, 386, 415, 509, 598, 623, 734
AluI	AGCT	8 cut(s)	229, 359, 386, 415, 509, 598, 623, 734
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	4 cut(s)	106, 151, 300, 757
ApeKI	GCWGC	3 cut(s)	356, 506, 509
ApoI	RAATTY	1 cut(s)	560
AsiGI	ACCGGT	1 cut(s)	279
AspLEI	GCGC	2 cut(s)	210, 212
AspS9I	GGNCC	4 cut(s)	277, 282, 686, 758
AsuC2I	CCSGG	2 cut(s)	286, 773
AvaII	GGWCC	3 cut(s)	277, 282, 686
BanI	GGYRCC	1 cut(s)	39
BarI	GAAGNNNNNNTAC	2 cut(s)	249, 281
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	368, 496, 518
BccI	CCATC	1 cut(s)	313
BceAI	ACGGC	1 cut(s)	542
BcgI	CGANNNNNNTGC	2 cut(s)	630, 664
BcnI	CCSGG	2 cut(s)	286, 773
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	4 cut(s)	11, 155, 290, 423
BfmI	CTRYAG	1 cut(s)	786
BisI	GCNGC	3 cut(s)	357, 507, 510
BlsI	GCNGC	3 cut(s)	358, 508, 511
Bme1390I	CCNGG	2 cut(s)	286, 773
Bme18I	GGWCC	3 cut(s)	277, 282, 686
BmgT120I	GGNCC	4 cut(s)	277, 282, 686, 758
BmiI	GGNNCC	3 cut(s)	41, 530, 844
BmrFI	CCNGG	2 cut(s)	286, 773
BmrI	ACTGGG	1 cut(s)	334
BmuI	ACTGGG	1 cut(s)	334
BoxI	GACNNNNGTC	1 cut(s)	194
BpuEI	CTTGAG	2 cut(s)	220, 813
BpuMI	CCSGG	2 cut(s)	286, 773
BsaI	GGTCTC	1 cut(s)	656
BsaJI	CCNNGG	3 cut(s)	100, 144, 303
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	6 cut(s)	141, 171, 237, 267, 753, 783
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 538
Bse118I	RCCGGY	1 cut(s)	279
Bse1I	ACTGG	3 cut(s)	94, 340, 666
BseDI	CCNNGG	3 cut(s)	100, 144, 303
BseLI	CCNNNNNNNGG	2 cut(s)	219, 538
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	3 cut(s)	94, 340, 666
BsePI	GCGCGC	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	426, 618
BseXI	GCAGC	3 cut(s)	368, 496, 518
BseYI	CCCAGC	2 cut(s)	415, 734
Bsh1236I	CGCG	3 cut(s)	35, 102, 210
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	4 cut(s)	108, 153, 302, 759
BshNI	GGYRCC	1 cut(s)	39
BshTI	ACCGGT	1 cut(s)	279
BsiEI	CGRYCG	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	3 cut(s)	280, 285, 772
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	2 cut(s)	219, 538
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	4 cut(s)	108, 153, 302, 759
Bso31I	GGTCTC	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	310, 565
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	4 cut(s)	100, 102, 378, 611
BspANI	GGCC	4 cut(s)	108, 153, 302, 759
BspCNI	CTCAG	1 cut(s)	479
BspFNI	CGCG	3 cut(s)	35, 102, 210
BspLI	GGNNCC	3 cut(s)	41, 530, 844
BspPI	GGATC	1 cut(s)	305
BspQI	GCTCTTC	1 cut(s)	801
BspT107I	GGYRCC	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	656
BsrFI	RCCGGY	1 cut(s)	279
BsrI	ACTGG	3 cut(s)	94, 340, 666
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	3 cut(s)	100, 144, 303
BssHII	GCGCGC	1 cut(s)	208
BssMI	GATC	2 cut(s)	310, 565
BssT1I	CCWWGG	2 cut(s)	144, 303
Bst4CI	ACNGT	3 cut(s)	274, 591, 790
Bst6I	CTCTTC	2 cut(s)	70, 801
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	466
BstDSI	CCRYGG	1 cut(s)	100
BstFNI	CGCG	3 cut(s)	35, 102, 210
BstHHI	GCGC	2 cut(s)	210, 212
BstKTI	GATC	2 cut(s)	313, 568
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	2 cut(s)	310, 565
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 791, 800
BstNSI	RCATGY	1 cut(s)	350
BstPAI	GACNNNNGTC	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	284, 771
BstSFI	CTRYAG	1 cut(s)	786
BstUI	CGCG	3 cut(s)	35, 102, 210
BstV1I	GCAGC	3 cut(s)	368, 496, 518
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	4 cut(s)	108, 153, 302, 759
BtgI	CCRYGG	1 cut(s)	100
BtsIMutI	CAGTG	3 cut(s)	347, 673, 795
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	2 cut(s)	210, 212
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	4 cut(s)	277, 282, 686, 758
Cfr42I	CCGCGG	1 cut(s)	103
CpoI	CGGWCCG	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	366
CspAI	ACCGGT	1 cut(s)	279
CspI	CGGWCCG	1 cut(s)	282
CviAII	CATG	3 cut(s)	187, 347, 533
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	1 cut(s)	466
DpnI	GATC	2 cut(s)	312, 567
DpnII	GATC	2 cut(s)	310, 565
DraIII	CACNNNGTG	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	70, 801
EarI	CTCTTC	2 cut(s)	70, 801
Eco130I	CCWWGG	2 cut(s)	144, 303
Eco147I	AGGCCT	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	656
Eco47I	GGWCC	3 cut(s)	277, 282, 686
Eco57I	CTGAAG	1 cut(s)	63
EcoT14I	CCWWGG	2 cut(s)	144, 303
ErhI	CCWWGG	2 cut(s)	144, 303
FaeI	CATG	3 cut(s)	190, 350, 536
FaiI	YATR	7 cut(s)	188, 266, 348, 503, 534, 720, 817
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	3 cut(s)	186, 346, 532
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	3 cut(s)	357, 507, 510
Fsp4HI	GCNGC	3 cut(s)	357, 507, 510
FspBI	CTAG	4 cut(s)	11, 155, 290, 423
GlaI	GCGC	2 cut(s)	209, 211
GluI	GCNGC	3 cut(s)	357, 507, 510
GsaI	CCCAGC	2 cut(s)	419, 738
HaeIII	GGCC	4 cut(s)	108, 153, 302, 759
HapII	CCGG	3 cut(s)	280, 285, 772
HhaI	GCGC	2 cut(s)	210, 212
Hin1II	CATG	3 cut(s)	190, 350, 536
Hin6I	GCGC	2 cut(s)	208, 210
HinP1I	GCGC	2 cut(s)	208, 210
HincII	GTYRAC	1 cut(s)	524
HindII	GTYRAC	1 cut(s)	524
HinfI	GANTC	4 cut(s)	495, 547, 768, 824
HpaII	CCGG	3 cut(s)	280, 285, 772
Hpy166II	GTNNAC	2 cut(s)	277, 524
Hpy188I	TCNGA	5 cut(s)	82, 127, 469, 810, 823
Hpy188III	TCNNGA	5 cut(s)	34, 167, 199, 654, 830
Hpy8I	GTNNAC	2 cut(s)	277, 524
HpyAV	CCTTC	5 cut(s)	147, 251, 367, 651, 686
HpyCH4III	ACNGT	3 cut(s)	274, 591, 790
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	7 cut(s)	4, 356, 408, 490, 587, 617, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 791, 800
HpyF3I	CTNAG	1 cut(s)	466
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	3 cut(s)	190, 350, 536
HspAI	GCGC	2 cut(s)	208, 210
KspI	CCGCGG	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	310, 565
LguI	GCTCTTC	1 cut(s)	801
LmnI	GCTCC	2 cut(s)	412, 534
Lsp1109I	GCAGC	3 cut(s)	368, 496, 518
MaeI	CTAG	4 cut(s)	11, 155, 290, 423
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	2 cut(s)	430, 634
MalI	GATC	2 cut(s)	312, 567
MboI	GATC	2 cut(s)	310, 565
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	2 cut(s)	560, 722
MlyI	GAGTC	2 cut(s)	504, 762
MmeI	TCCRAC	2 cut(s)	114, 664
MseI	TTAA	2 cut(s)	234, 644
MspA1I	CMGCKG	2 cut(s)	102, 509
MspI	CCGG	3 cut(s)	280, 285, 772
MspR9I	CCNGG	2 cut(s)	286, 773
Mva1269I	GAATGC	1 cut(s)	59
MvnI	CGCG	3 cut(s)	35, 102, 210
MwoI	GCNNNNNNNGC	3 cut(s)	114, 791, 800
NciI	CCSGG	2 cut(s)	286, 773
NdeII	GATC	2 cut(s)	310, 565
NlaIII	CATG	3 cut(s)	190, 350, 536
NlaIV	GGNNCC	3 cut(s)	41, 530, 844
NruI	TCGCGA	1 cut(s)	35
NspI	RCATGY	1 cut(s)	350
PauI	GCGCGC	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	801
PctI	GAATGC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	547, 824
PflMI	CCANNNNNTGG	1 cut(s)	538
PinAI	ACCGGT	1 cut(s)	279
PkrI	GCNGC	3 cut(s)	358, 508, 511
PleI	GAGTC	2 cut(s)	503, 762
PpsI	GAGTC	2 cut(s)	503, 762
PshAI	GACNNNNGTC	1 cut(s)	194
Psp1406I	AACGTT	1 cut(s)	451
PspFI	CCCAGC	2 cut(s)	415, 734
PspN4I	GGNNCC	3 cut(s)	41, 530, 844
PspPI	GGNCC	4 cut(s)	277, 282, 686, 758
PsuI	RGATCY	1 cut(s)	310
PteI	GCGCGC	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	509
RruI	TCGCGA	1 cut(s)	35
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
Rsr2I	CGGWCCG	1 cut(s)	282
RsrII	CGGWCCG	1 cut(s)	282
SacII	CCGCGG	1 cut(s)	103
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	2 cut(s)	234, 644
SatI	GCNGC	3 cut(s)	357, 507, 510
Sau3AI	GATC	2 cut(s)	310, 565
Sau96I	GGNCC	4 cut(s)	277, 282, 686, 758
SchI	GAGTC	2 cut(s)	504, 762
ScrFI	CCNGG	2 cut(s)	286, 773
SduI	GDGCHC	1 cut(s)	338
SfcI	CTRYAG	1 cut(s)	786
Sfr303I	CCGCGG	1 cut(s)	103
SgrBI	CCGCGG	1 cut(s)	103
SinI	GGWCC	3 cut(s)	277, 282, 686
SmlI	CTYRAG	2 cut(s)	199, 828
SmoI	CTYRAG	2 cut(s)	199, 828
Sse9I	AATT	2 cut(s)	560, 722
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	4 cut(s)	100, 102, 378, 611
SspMI	CTAG	4 cut(s)	11, 155, 290, 423
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	284, 771
StyI	CCWWGG	2 cut(s)	144, 303
TaaI	ACNGT	3 cut(s)	274, 591, 790
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	3 cut(s)	55, 382, 766
TasI	AATT	2 cut(s)	560, 722
TfiI	GAWTC	2 cut(s)	547, 824
Tru1I	TTAA	2 cut(s)	234, 644
Tru9I	TTAA	2 cut(s)	234, 644
TscAI	CASTG	3 cut(s)	347, 673, 795
TseI	GCWGC	3 cut(s)	356, 506, 509
TspDTI	ATGAA	3 cut(s)	549, 572, 735
TspGWI	ACGGA	2 cut(s)	425, 719
TspRI	CASTG	3 cut(s)	347, 673, 795
Van91I	CCANNNNNTGG	1 cut(s)	538
VpaK11BI	GGWCC	3 cut(s)	277, 282, 686
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XspI	CTAG	4 cut(s)	11, 155, 290, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.