Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006785

Physical Location & Seq

Genomic Coordinates Reverse (-)

17984836 .. 17989149

Gene Structure 4314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1109100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCTACAGGGAGGCGTAGTCCGCGTACAAGGCGACGAGTTCTGGCACATGACTAAAGTTTTGAGGTTGTGCGCCAATGATAGGGTAGAGCTTTTCAATGGGAAAGGAAATTTGATACAAGGGTTAATACAGAGCGTCGACCGCTCTGGGCTTGATTTTGTGGCATTGGAAGATCCAAAGTTAGTTCTTCCACAGAACACACAGTGGCATGTGTTTGCGGGTTTTGGTACTTTGAAGGGTGGTCGAGCTGACTGGCTTGTTGAGAAATGCACGGAGCTGGGGGCTAGTAGTTTAACCCCTCTGCTGACAGAGCGGTCTCCTACTATCTCAGAAAATCGGGTGGACAGGTTGCAGCGTGTCAACATGGCAGCAGCTAAACAATGCCAACGGCTACATGAAATGATTATGAATCCTCCAGTGAAAGTTAATGGTCTTTTAGCTCTTGTTGCACAGTCAAAGCTAGCTTTTTTGGCAACTGCAGAAGCTACTCCTCTTGTTAGTGCATTAACTTCATCAGGATGGGAGTCCAGTGGGCTGATTGTTGTTGGACCAGAAGGTGACTTCACTGAGAAAGAGGTGAGTGACTTGATGGAAGCTGGTGCTATCTCAGTTGGTCTTGGCCCACATCGACTACGGGTTGAAACTGCAACAGTGGCTCTTCTGGCAACTCTCATGTTATGGTCTGATTCTCAAAAAGCATATGATTCAGAATGTCAACTTCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

243

Amino Acids

26.31

Weight (kDa)

5.63

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA_4	PF20260	10 - 54	3.3e-10	RNA methyltransferase PUA domain
Methyltrans_RNA	PF04452	70 - 224	1.4e-36	RNA methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50000 AT1G50000 AT1G50000 AT1G50000 AT1G50000
fragaria_vesca	FvH4_2g03440 FvH4_2g03440 FvH4_2g03440 FvH4_2g03440
malus_domestica	MD10G1109100.v1.1
prunus_persica	Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1
pyrus_communis	pycom10g09440
rosa_chinensis	RchiOBHm_Chr6g0248601
rosa_laevigata	RLG00000015140
rosa_multiflora	Rmu_sc0002553.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213180
rosa_rugosa	Rorug05G0532400 Rorug05G0532400
rosa_samantha	Rh6AG049300 Rh6BG045100 Rh6CG041300 Rh6DG037600
rosa_wichuraiana	Rw6G004260 Rw6G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	313
AccBSI	CCGCTC	2 cut(s)	144, 313
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	24
AciI	CCGC	4 cut(s)	22, 142, 218, 313
AclWI	GGATC	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	109
AdeI	CACNNNGTG	1 cut(s)	204
AfaI	GTAC	2 cut(s)	27, 229
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	3 cut(s)	97, 235, 641
AluBI	AGCT	9 cut(s)	91, 248, 277, 374, 440, 460, 464, 485, 596
AluI	AGCT	9 cut(s)	91, 248, 277, 374, 440, 460, 464, 485, 596
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	619
ApeKI	GCWGC	3 cut(s)	352, 368, 371
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	548, 620
AsuHPI	GGTGA	2 cut(s)	569, 589
AsuNHI	GCTAGC	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	548
BaeI	ACNNNNGTAYC	2 cut(s)	107, 140
BbvI	GCAGC	3 cut(s)	364, 380, 383
BccI	CCATC	2 cut(s)	513, 583
BceAI	ACGGC	1 cut(s)	404
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	2 cut(s)	285, 461
BfmI	CTRYAG	2 cut(s)	5, 477
BisI	GCNGC	3 cut(s)	353, 369, 372
BlsI	GCNGC	3 cut(s)	354, 370, 373
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	2 cut(s)	548, 620
BmtI	GCTAGC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	321
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	3 cut(s)	257, 416, 528
BseGI	GGATG	1 cut(s)	524
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMII	CTCAG	3 cut(s)	342, 558, 621
BseNI	ACTGG	3 cut(s)	257, 416, 528
BseRI	GAGGAG	1 cut(s)	480
BseXI	GCAGC	3 cut(s)	364, 380, 383
BseYI	CCCAGC	1 cut(s)	277
Bsh1236I	CGCG	1 cut(s)	24
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	621
BsiEI	CGRYCG	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	621
Bso31I	GGTCTC	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	4 cut(s)	22, 142, 218, 313
BspANI	GGCC	1 cut(s)	621
BspCNI	CTCAG	3 cut(s)	341, 559, 620
BspFNI	CGCG	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	481
BspOI	GCTAGC	1 cut(s)	464
BspPI	GGATC	1 cut(s)	167
BspQI	GCTCTTC	1 cut(s)	663
BspTNI	GGTCTC	1 cut(s)	321
BsrBI	CCGCTC	2 cut(s)	144, 313
BsrI	ACTGG	3 cut(s)	257, 416, 528
BssMI	GATC	1 cut(s)	172
Bst4CI	ACNGT	3 cut(s)	204, 453, 652
Bst6I	CTCTTC	1 cut(s)	663
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	3 cut(s)	328, 567, 607
BstF5I	GGATG	1 cut(s)	524
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	172
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	8 cut(s)	21, 30, 141, 310, 446, 470, 653, 662
BstNSI	RCATGY	1 cut(s)	212
BstSFI	CTRYAG	2 cut(s)	5, 477
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	364, 380, 383
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	621
BtsCI	GGATG	1 cut(s)	524
BtsIMutI	CAGTG	5 cut(s)	209, 423, 535, 564, 657
Cac8I	GCNNGC	1 cut(s)	462
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	548, 620
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	26, 228
CviAII	CATG	5 cut(s)	49, 209, 364, 395, 673
CviQI	GTAC	2 cut(s)	26, 228
DdeI	CTNAG	3 cut(s)	328, 567, 607
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
DraIII	CACNNNGTG	1 cut(s)	204
DrdI	GACNNNNNNGTC	1 cut(s)	313
DseDI	GACNNNNNNGTC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
Eco31I	GGTCTC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	548
FaeI	CATG	5 cut(s)	52, 212, 367, 398, 676
FaiI	YATR	9 cut(s)	50, 210, 365, 396, 407, 674, 679, 700, 702
FatI	CATG	5 cut(s)	48, 208, 363, 394, 672
FauI	CCCGC	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	3 cut(s)	353, 369, 372
FokI	GGATG	1 cut(s)	531
Fsp4HI	GCNGC	3 cut(s)	353, 369, 372
FspBI	CTAG	2 cut(s)	285, 461
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	3 cut(s)	353, 369, 372
GsaI	CCCAGC	1 cut(s)	281
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	621
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	5 cut(s)	52, 212, 367, 398, 676
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	3 cut(s)	139, 361, 716
HindII	GTYRAC	3 cut(s)	139, 361, 716
HinfI	GANTC	4 cut(s)	409, 524, 686, 704
HphI	GGTGA	2 cut(s)	569, 589
Hpy166II	GTNNAC	4 cut(s)	139, 343, 361, 716
Hpy188I	TCNGA	4 cut(s)	331, 685, 709, 723
Hpy188III	TCNNGA	1 cut(s)	516
Hpy8I	GTNNAC	4 cut(s)	139, 343, 361, 716
Hpy99I	CGWCG	2 cut(s)	38, 140
HpyAV	CCTTC	2 cut(s)	229, 548
HpyCH4III	ACNGT	3 cut(s)	204, 453, 652
HpyCH4V	TGCA	6 cut(s)	270, 352, 449, 479, 503, 647
HpyF10VI	GCNNNNNNNGC	8 cut(s)	21, 30, 141, 310, 446, 470, 653, 662
HpyF3I	CTNAG	3 cut(s)	328, 567, 607
Hsp92II	CATG	5 cut(s)	52, 212, 367, 398, 676
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	172
LguI	GCTCTTC	1 cut(s)	663
LmnI	GCTCC	1 cut(s)	274
Lsp1109I	GCAGC	3 cut(s)	364, 380, 383
MaeI	CTAG	2 cut(s)	285, 461
MaeIII	GTNAC	2 cut(s)	557, 581
MalI	GATC	1 cut(s)	174
MbiI	CCGCTC	2 cut(s)	144, 313
MboI	GATC	1 cut(s)	172
MboII	GAAGA	3 cut(s)	179, 182, 650
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	6 cut(s)	5, 57, 309, 423, 501, 568
MseI	TTAA	4 cut(s)	125, 293, 426, 506
MslI	CAYNNNNRTG	1 cut(s)	517
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	8 cut(s)	21, 30, 141, 310, 446, 470, 653, 662
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	1 cut(s)	172
NheI	GCTAGC	1 cut(s)	460
NlaIII	CATG	5 cut(s)	52, 212, 367, 398, 676
NmuCI	GTSAC	2 cut(s)	557, 581
NspI	RCATGY	1 cut(s)	212
PciSI	GCTCTTC	1 cut(s)	663
PfeI	GAWTC	3 cut(s)	409, 686, 704
PkrI	GCNGC	3 cut(s)	354, 370, 373
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PspFI	CCCAGC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	548, 620
PstI	CTGCAG	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	2 cut(s)	27, 229
RsaNI	GTAC	2 cut(s)	26, 228
RseI	CAYNNNNRTG	1 cut(s)	517
SalI	GTCGAC	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	663
SaqAI	TTAA	4 cut(s)	125, 293, 426, 506
SatI	GCNGC	3 cut(s)	353, 369, 372
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	2 cut(s)	548, 620
SchI	GAGTC	1 cut(s)	533
SfcI	CTRYAG	2 cut(s)	5, 477
SinI	GGWCC	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	517
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	4 cut(s)	22, 142, 218, 313
SspMI	CTAG	2 cut(s)	285, 461
TaaI	ACNGT	3 cut(s)	204, 453, 652
TaqI	TCGA	3 cut(s)	138, 244, 628
TasI	AATT	1 cut(s)	109
TfiI	GAWTC	3 cut(s)	409, 686, 704
Tru1I	TTAA	4 cut(s)	125, 293, 426, 506
Tru9I	TTAA	4 cut(s)	125, 293, 426, 506
TscAI	CASTG	5 cut(s)	209, 423, 535, 571, 657
TseFI	GTSAC	2 cut(s)	557, 581
TseI	GCWGC	3 cut(s)	352, 368, 371
Tsp45I	GTSAC	2 cut(s)	557, 581
TspDTI	ATGAA	3 cut(s)	411, 422, 501
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	5 cut(s)	209, 423, 535, 571, 657
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	1 cut(s)	109
XceI	RCATGY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	2 cut(s)	285, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.