Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006785

Physical Location & Seq

Genomic Coordinates Forward (+)

6949641 .. 6952645

Gene Structure 3005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G004360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCAGAGCCTAGCACCAATACGACCTCGTTTCGTGAGGTGCCTCCCAACCTTTCGAGCATTCTCTTCTTCTTCTTCTTCTTCAGATTACTCCAACCAGTCCCGCGGTGGCCTCCCTCGCTTCTTCTCCGAACGCCTCCCTTCTTCCAAGGGAGGCCTAGTTCGCGTTCAAGATGATGAGTTCTGGCACATGACTAAAGTCTTGAGATTACGCGCCAATGATAGGGTAGAGCTGTTTAATGGGAAAGGAGGTTTGGTAGAAGGAGTAATACAAACGGTGGACCGGTCCGGGCTTGATTTCGTGGCCTTGGAAGATCCAAAGTTGGTTCTTCCACAGAGCACGCAGTGGCATGTGTTTGCAGCTTTTGGTACTTTAAAGGGCGGTCGAGCTGATTGGCTTGTGGAGAAATGCACGGAGCTGGGGGCTAGTAGTGTGACTCCTCTGCTGACAGAACGTTCTCCTACTATCTCAGAAAATCGGCTGGATAGGTTGCAGAGAGTCAATATGGCAGCTGCTAAACAATGTCAACGGCTCCATGAAATGGTACTGAATCCCCCAATGAAAATTGATCGTCTTTTGCCCCTTGTTGCACAGTCCAAGCTATCTTTTTTGGCGGTTGCAGAAGCTACTTCTCTTGTTACTGCATTAACTTCGTCAAGAAGGGAGACCAGTGGGCTGATTGTGGTTGGACCAGAAGGCGACTTCACAGAGAAAGAGGTGTATGAATTGATAAAAGCTGGGTCAATCTCTGTTGGTCTTGGCCCACATCGACTCCGGGTAGAAACGGCTACAGTGGCTCTTCTGGCAACTCTGATGTTATGGTCTGATTCTCAAGAAAAGTGTGGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

283

Amino Acids

31.14

Weight (kDa)

9.13

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA_4	PF20260	57 - 101	2.4e-12	RNA methyltransferase PUA domain
Methyltrans_RNA	PF04452	116 - 271	3.1e-37	RNA methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50000 AT1G50000 AT1G50000 AT1G50000 AT1G50000
fragaria_vesca	FvH4_2g03440 FvH4_2g03440 FvH4_2g03440 FvH4_2g03440
malus_domestica	MD10G1109100.v1.1
prunus_persica	Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1
pyrus_communis	pycom10g09440
rosa_chinensis	RchiOBHm_Chr6g0248601
rosa_laevigata	RLG00000015140
rosa_multiflora	Rmu_sc0002553.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213180
rosa_rugosa	Rorug05G0532400 Rorug05G0532400
rosa_samantha	Rh6AG049300 Rh6BG045100 Rh6CG041300 Rh6DG037600
rosa_wichuraiana	Rw6G004260 Rw6G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	541
AccII	CGCG	3 cut(s)	105, 165, 213
AciI	CCGC	4 cut(s)	103, 105, 381, 614
AclI	AACGTT	1 cut(s)	454
AclWI	GGATC	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	370, 546
AfiI	CCNNNNNNNGG	2 cut(s)	222, 541
AgeI	ACCGGT	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	170
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AloI	GAACNNNNNNTCC	2 cut(s)	144, 176
AluBI	AGCT	8 cut(s)	232, 362, 389, 418, 512, 601, 626, 737
AluI	AGCT	8 cut(s)	232, 362, 389, 418, 512, 601, 626, 737
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	1 cut(s)	659
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	4 cut(s)	109, 154, 303, 760
ApeKI	GCWGC	3 cut(s)	359, 509, 512
AsiGI	ACCGGT	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	4 cut(s)	280, 285, 689, 761
AsuC2I	CCSGG	2 cut(s)	289, 776
AvaII	GGWCC	3 cut(s)	280, 285, 689
BanI	GGYRCC	1 cut(s)	39
BarI	GAAGNNNNNNTAC	2 cut(s)	252, 284
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	3 cut(s)	371, 499, 521
BceAI	ACGGC	2 cut(s)	545, 801
BcgI	CGANNNNNNTGC	2 cut(s)	633, 667
BcnI	CCSGG	2 cut(s)	289, 776
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	3 cut(s)	11, 158, 426
BfmI	CTRYAG	1 cut(s)	789
BisI	GCNGC	3 cut(s)	360, 510, 513
BlsI	GCNGC	3 cut(s)	361, 511, 514
Bme1390I	CCNGG	2 cut(s)	289, 776
Bme18I	GGWCC	3 cut(s)	280, 285, 689
BmgT120I	GGNCC	4 cut(s)	280, 285, 689, 761
BmiI	GGNNCC	3 cut(s)	41, 533, 847
BmrFI	CCNGG	2 cut(s)	289, 776
BoxI	GACNNNNGTC	1 cut(s)	197
BpuEI	CTTGAG	2 cut(s)	223, 816
BpuMI	CCSGG	2 cut(s)	289, 776
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	3 cut(s)	103, 147, 306
BsaWI	WCCGGW	1 cut(s)	282
BsaXI	ACNNNNNCTCC	6 cut(s)	144, 174, 240, 270, 756, 786
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 541
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	2 cut(s)	97, 669
BseDI	CCNNGG	3 cut(s)	103, 147, 306
BseLI	CCNNNNNNNGG	2 cut(s)	222, 541
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	97, 669
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	3 cut(s)	371, 499, 521
BseYI	CCCAGC	2 cut(s)	418, 737
Bsh1236I	CGCG	3 cut(s)	105, 165, 213
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	4 cut(s)	111, 156, 305, 762
BshNI	GGYRCC	1 cut(s)	39
BshTI	ACCGGT	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	341
BsiSI	CCGG	3 cut(s)	283, 288, 775
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	222, 541
BsmAI	GTCTC	1 cut(s)	659
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	4 cut(s)	111, 156, 305, 762
Bso31I	GGTCTC	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	2 cut(s)	313, 568
BspACI	CCGC	4 cut(s)	103, 105, 381, 614
BspANI	GGCC	4 cut(s)	111, 156, 305, 762
BspCNI	CTCAG	1 cut(s)	482
BspFNI	CGCG	3 cut(s)	105, 165, 213
BspLI	GGNNCC	3 cut(s)	41, 533, 847
BspPI	GGATC	1 cut(s)	308
BspQI	GCTCTTC	1 cut(s)	804
BspT107I	GGYRCC	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	659
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	97, 669
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	3 cut(s)	103, 147, 306
BssMI	GATC	2 cut(s)	313, 568
BssT1I	CCWWGG	2 cut(s)	147, 306
Bst4CI	ACNGT	3 cut(s)	277, 594, 793
Bst6I	CTCTTC	2 cut(s)	70, 804
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	469
BstDSI	CCRYGG	1 cut(s)	103
BstFNI	CGCG	3 cut(s)	105, 165, 213
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	2 cut(s)	316, 571
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	2 cut(s)	313, 568
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 162, 794, 803
BstNSI	RCATGY	1 cut(s)	353
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	287, 774
BstSFI	CTRYAG	1 cut(s)	789
BstUI	CGCG	3 cut(s)	105, 165, 213
BstV1I	GCAGC	3 cut(s)	371, 499, 521
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	4 cut(s)	111, 156, 305, 762
BtgI	CCRYGG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	3 cut(s)	350, 676, 798
Cac8I	GCNNGC	1 cut(s)	341
CfoI	GCGC	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	4 cut(s)	280, 285, 689, 761
Cfr42I	CCGCGG	1 cut(s)	106
CpoI	CGGWCCG	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	369, 545
CspAI	ACCGGT	1 cut(s)	282
CspI	CGGWCCG	1 cut(s)	285
CviAII	CATG	3 cut(s)	190, 350, 536
CviQI	GTAC	2 cut(s)	369, 545
DdeI	CTNAG	1 cut(s)	469
DpnI	GATC	2 cut(s)	315, 570
DpnII	GATC	2 cut(s)	313, 568
DraI	TTTAAA	1 cut(s)	375
DraIII	CACNNNGTG	1 cut(s)	345
Eam1104I	CTCTTC	2 cut(s)	70, 804
EarI	CTCTTC	2 cut(s)	70, 804
Eco130I	CCWWGG	2 cut(s)	147, 306
Eco147I	AGGCCT	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	659
Eco47I	GGWCC	3 cut(s)	280, 285, 689
Eco57I	CTGAAG	1 cut(s)	66
EcoT14I	CCWWGG	2 cut(s)	147, 306
ErhI	CCWWGG	2 cut(s)	147, 306
FaeI	CATG	3 cut(s)	193, 353, 539
FaiI	YATR	6 cut(s)	191, 351, 506, 537, 723, 820
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	3 cut(s)	189, 349, 535
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	3 cut(s)	360, 510, 513
Fsp4HI	GCNGC	3 cut(s)	360, 510, 513
FspBI	CTAG	3 cut(s)	11, 158, 426
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	3 cut(s)	360, 510, 513
GsaI	CCCAGC	2 cut(s)	422, 741
HaeIII	GGCC	4 cut(s)	111, 156, 305, 762
HapII	CCGG	3 cut(s)	283, 288, 775
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	193, 353, 539
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	527
HindII	GTYRAC	1 cut(s)	527
HinfI	GANTC	5 cut(s)	436, 498, 550, 771, 827
HpaII	CCGG	3 cut(s)	283, 288, 775
Hpy166II	GTNNAC	2 cut(s)	280, 527
Hpy188I	TCNGA	5 cut(s)	85, 130, 472, 813, 826
Hpy188III	TCNNGA	5 cut(s)	34, 170, 202, 657, 833
Hpy8I	GTNNAC	2 cut(s)	280, 527
HpyAV	CCTTC	4 cut(s)	150, 254, 654, 689
HpyCH4III	ACNGT	3 cut(s)	277, 594, 793
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	7 cut(s)	4, 359, 411, 493, 590, 620, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 162, 794, 803
HpyF3I	CTNAG	1 cut(s)	469
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	3 cut(s)	193, 353, 539
HspAI	GCGC	1 cut(s)	213
KspI	CCGCGG	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	313, 568
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	2 cut(s)	415, 537
Lsp1109I	GCAGC	3 cut(s)	371, 499, 521
MaeI	CTAG	3 cut(s)	11, 158, 426
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	2 cut(s)	433, 637
MalI	GATC	2 cut(s)	315, 570
MboI	GATC	2 cut(s)	313, 568
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	2 cut(s)	564, 725
MlyI	GAGTC	3 cut(s)	430, 507, 765
MmeI	TCCRAC	2 cut(s)	117, 667
MseI	TTAA	3 cut(s)	237, 374, 647
MspA1I	CMGCKG	2 cut(s)	105, 512
MspI	CCGG	3 cut(s)	283, 288, 775
MspR9I	CCNGG	2 cut(s)	289, 776
Mva1269I	GAATGC	1 cut(s)	59
MvnI	CGCG	3 cut(s)	105, 165, 213
MwoI	GCNNNNNNNGC	4 cut(s)	117, 162, 794, 803
NciI	CCSGG	2 cut(s)	289, 776
NdeII	GATC	2 cut(s)	313, 568
NlaIII	CATG	3 cut(s)	193, 353, 539
NlaIV	GGNNCC	3 cut(s)	41, 533, 847
NmuCI	GTSAC	1 cut(s)	433
NspI	RCATGY	1 cut(s)	353
PceI	AGGCCT	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	804
PctI	GAATGC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	550, 827
PflMI	CCANNNNNTGG	1 cut(s)	541
PinAI	ACCGGT	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	361, 511, 514
PleI	GAGTC	3 cut(s)	430, 506, 765
PpsI	GAGTC	3 cut(s)	430, 506, 765
PshAI	GACNNNNGTC	1 cut(s)	197
Psp1406I	AACGTT	1 cut(s)	454
PspFI	CCCAGC	2 cut(s)	418, 737
PspN4I	GGNNCC	3 cut(s)	41, 533, 847
PspPI	GGNCC	4 cut(s)	280, 285, 689, 761
PsuI	RGATCY	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	2 cut(s)	370, 546
RsaNI	GTAC	2 cut(s)	369, 545
Rsr2I	CGGWCCG	1 cut(s)	285
RsrII	CGGWCCG	1 cut(s)	285
SacII	CCGCGG	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	3 cut(s)	237, 374, 647
SatI	GCNGC	3 cut(s)	360, 510, 513
Sau3AI	GATC	2 cut(s)	313, 568
Sau96I	GGNCC	4 cut(s)	280, 285, 689, 761
SchI	GAGTC	3 cut(s)	430, 507, 765
ScrFI	CCNGG	2 cut(s)	289, 776
SduI	GDGCHC	1 cut(s)	341
SfcI	CTRYAG	1 cut(s)	789
Sfr303I	CCGCGG	1 cut(s)	106
SgrBI	CCGCGG	1 cut(s)	106
SinI	GGWCC	3 cut(s)	280, 285, 689
SmlI	CTYRAG	2 cut(s)	202, 831
SmoI	CTYRAG	2 cut(s)	202, 831
Sse9I	AATT	2 cut(s)	564, 725
SseBI	AGGCCT	1 cut(s)	156
SsiI	CCGC	4 cut(s)	103, 105, 381, 614
SspMI	CTAG	3 cut(s)	11, 158, 426
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	287, 774
StyI	CCWWGG	2 cut(s)	147, 306
TaaI	ACNGT	3 cut(s)	277, 594, 793
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	3 cut(s)	55, 385, 769
TasI	AATT	2 cut(s)	564, 725
TfiI	GAWTC	2 cut(s)	550, 827
Tru1I	TTAA	3 cut(s)	237, 374, 647
Tru9I	TTAA	3 cut(s)	237, 374, 647
TscAI	CASTG	3 cut(s)	350, 676, 798
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	3 cut(s)	359, 509, 512
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	3 cut(s)	552, 575, 738
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	3 cut(s)	350, 676, 798
Van91I	CCANNNNNTGG	1 cut(s)	541
VpaK11BI	GGWCC	3 cut(s)	280, 285, 689
XceI	RCATGY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XspI	CTAG	3 cut(s)	11, 158, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.