Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002553.1

Orthogroup ID

OG0006785

Physical Location & Seq

Genomic Coordinates Forward (+)

164924 .. 167919

Gene Structure 2996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002553.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atgcagagcctagcaccaatacgacctcgtttcgcgaagtgcctcacaacctttcgagcattctcatcttcttcttcttcttcttcagattactccaaccagtcccgcggtggcctccctcgcttcttctccgaacgcctcccttcttccaagggaggcctagttcgcgttcaagatgatgagttctggcacatgactaaagtcttgagattacgcgccaatgatagggtagagctgtttaatgggaaaggaggtttggtagaaggagtaatacaaacggtggaccggtccgggcttgatttcgtggccttggaagatccaaagttggttcttccacagagcacgcagtggcatgtgtttgcagcttttggtactttaaagggcggtcgagctgattggcttgtggagaaatgcacggagctgggggctagtagtgtgactcctctgctgacagaacgttctcctactatctcagaaaatcggctggataggttgcagagagtcaatatggcagctgctaaacaatgtcaacggctccatgaaatggtattgaatcccccaatgaaaattgatcgtcttttgccccttgttgcacagtccaagctatcttttttggcggttgctgaagctactcctcttgttactgcattaacttcgtcaagaagggagaccagtgggctgattgtggttggaccagaaggcgacttcacagagaaagaggtgtatgaattgataaaagctgggtcaatctctgttggtcttggcccacatcgactccgggtagaaacggctacagtggctcttctggcaactctgatgttatggtctgattctcaagaaaagtgtggttcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

284

Amino Acids

31.19

Weight (kDa)

9.11

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50000 AT1G50000 AT1G50000 AT1G50000 AT1G50000
fragaria_vesca	FvH4_2g03440 FvH4_2g03440 FvH4_2g03440 FvH4_2g03440
malus_domestica	MD10G1109100.v1.1
prunus_persica	Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1
pyrus_communis	pycom10g09440
rosa_chinensis	RchiOBHm_Chr6g0248601
rosa_laevigata	RLG00000015140
rosa_multiflora	Rmu_sc0002553.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213180
rosa_rugosa	Rorug05G0532400 Rorug05G0532400
rosa_samantha	Rh6AG049300 Rh6BG045100 Rh6CG041300 Rh6DG037600
rosa_wichuraiana	Rw6G004260 Rw6G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	544
AccII	CGCG	4 cut(s)	35, 108, 168, 216
AciI	CCGC	4 cut(s)	106, 108, 384, 617
AclI	AACGTT	1 cut(s)	457
AclWI	GGATC	1 cut(s)	311
AcuI	CTGAAG	2 cut(s)	69, 645
AdeI	CACNNNGTG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	2 cut(s)	225, 544
AgeI	ACCGGT	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	173, 553
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AloI	GAACNNNNNNTCC	2 cut(s)	147, 179
AluBI	AGCT	8 cut(s)	235, 365, 392, 421, 515, 604, 629, 740
AluI	AGCT	8 cut(s)	235, 365, 392, 421, 515, 604, 629, 740
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	4 cut(s)	112, 157, 306, 763
ApeKI	GCWGC	3 cut(s)	362, 512, 515
AsiGI	ACCGGT	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	4 cut(s)	283, 288, 692, 764
AsuC2I	CCSGG	2 cut(s)	292, 779
AvaII	GGWCC	3 cut(s)	283, 288, 692
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
Bbv12I	GWGCWC	1 cut(s)	344
BbvI	GCAGC	3 cut(s)	374, 502, 524
BceAI	ACGGC	2 cut(s)	548, 804
BcgI	CGANNNNNNTGC	2 cut(s)	636, 670
BcnI	CCSGG	2 cut(s)	292, 779
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	3 cut(s)	11, 161, 429
BfmI	CTRYAG	1 cut(s)	792
BisI	GCNGC	3 cut(s)	363, 513, 516
BlsI	GCNGC	3 cut(s)	364, 514, 517
Bme1390I	CCNGG	2 cut(s)	292, 779
Bme18I	GGWCC	3 cut(s)	283, 288, 692
BmgT120I	GGNCC	4 cut(s)	283, 288, 692, 764
BmiI	GGNNCC	2 cut(s)	536, 850
BmrFI	CCNGG	2 cut(s)	292, 779
BoxI	GACNNNNGTC	1 cut(s)	200
BpuEI	CTTGAG	2 cut(s)	226, 819
BpuMI	CCSGG	2 cut(s)	292, 779
BsaI	GGTCTC	1 cut(s)	662
BsaJI	CCNNGG	3 cut(s)	106, 150, 309
BsaWI	WCCGGW	1 cut(s)	285
BsaXI	ACNNNNNCTCC	6 cut(s)	147, 177, 243, 273, 759, 789
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 544
Bse118I	RCCGGY	1 cut(s)	285
Bse1I	ACTGG	2 cut(s)	100, 672
BseDI	CCNNGG	3 cut(s)	106, 150, 309
BseLI	CCNNNNNNNGG	2 cut(s)	225, 544
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	100, 672
BseRI	GAGGAG	2 cut(s)	432, 624
BseXI	GCAGC	3 cut(s)	374, 502, 524
BseYI	CCCAGC	2 cut(s)	421, 740
Bsh1236I	CGCG	4 cut(s)	35, 108, 168, 216
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	4 cut(s)	114, 159, 308, 765
BshTI	ACCGGT	1 cut(s)	285
BsiEI	CGRYCG	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	344
BsiSI	CCGG	3 cut(s)	286, 291, 778
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	2 cut(s)	225, 544
BsmAI	GTCTC	1 cut(s)	662
BsmFI	GGGAC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	4 cut(s)	114, 159, 308, 765
Bso31I	GGTCTC	1 cut(s)	662
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	316, 571
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	4 cut(s)	106, 108, 384, 617
BspANI	GGCC	4 cut(s)	114, 159, 308, 765
BspCNI	CTCAG	1 cut(s)	485
BspFNI	CGCG	4 cut(s)	35, 108, 168, 216
BspLI	GGNNCC	2 cut(s)	536, 850
BspPI	GGATC	1 cut(s)	311
BspQI	GCTCTTC	1 cut(s)	807
BspTNI	GGTCTC	1 cut(s)	662
BsrFI	RCCGGY	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	100, 672
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	3 cut(s)	106, 150, 309
BssMI	GATC	2 cut(s)	316, 571
BssT1I	CCWWGG	2 cut(s)	150, 309
Bst4CI	ACNGT	3 cut(s)	280, 597, 796
Bst6I	CTCTTC	1 cut(s)	807
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	1 cut(s)	472
BstDSI	CCRYGG	1 cut(s)	106
BstFNI	CGCG	4 cut(s)	35, 108, 168, 216
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	2 cut(s)	319, 574
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	2 cut(s)	316, 571
BstMCI	CGRYCG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 165, 797, 806
BstNSI	RCATGY	1 cut(s)	356
BstPAI	GACNNNNGTC	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	290, 777
BstSFI	CTRYAG	1 cut(s)	792
BstUI	CGCG	4 cut(s)	35, 108, 168, 216
BstV1I	GCAGC	3 cut(s)	374, 502, 524
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	4 cut(s)	114, 159, 308, 765
BtgI	CCRYGG	1 cut(s)	106
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	3 cut(s)	353, 679, 801
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	344
CfoI	GCGC	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	285
Cfr13I	GGNCC	4 cut(s)	283, 288, 692, 764
Cfr42I	CCGCGG	1 cut(s)	109
CpoI	CGGWCCG	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	372
CspAI	ACCGGT	1 cut(s)	285
CspI	CGGWCCG	1 cut(s)	288
CviAII	CATG	3 cut(s)	193, 353, 539
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	1 cut(s)	472
DpnI	GATC	2 cut(s)	318, 573
DpnII	GATC	2 cut(s)	316, 571
DraI	TTTAAA	1 cut(s)	378
DraIII	CACNNNGTG	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Eco130I	CCWWGG	2 cut(s)	150, 309
Eco147I	AGGCCT	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	662
Eco47I	GGWCC	3 cut(s)	283, 288, 692
Eco57I	CTGAAG	2 cut(s)	69, 645
EcoT14I	CCWWGG	2 cut(s)	150, 309
ErhI	CCWWGG	2 cut(s)	150, 309
FaeI	CATG	3 cut(s)	196, 356, 542
FaiI	YATR	6 cut(s)	194, 354, 509, 540, 726, 823
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	3 cut(s)	192, 352, 538
FauI	CCCGC	1 cut(s)	113
Fnu4HI	GCNGC	3 cut(s)	363, 513, 516
Fsp4HI	GCNGC	3 cut(s)	363, 513, 516
FspBI	CTAG	3 cut(s)	11, 161, 429
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	3 cut(s)	363, 513, 516
GsaI	CCCAGC	2 cut(s)	425, 744
HaeIII	GGCC	4 cut(s)	114, 159, 308, 765
HapII	CCGG	3 cut(s)	286, 291, 778
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	3 cut(s)	196, 356, 542
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	530
HindII	GTYRAC	1 cut(s)	530
HinfI	GANTC	5 cut(s)	439, 501, 553, 774, 830
HpaII	CCGG	3 cut(s)	286, 291, 778
Hpy166II	GTNNAC	2 cut(s)	283, 530
Hpy188I	TCNGA	5 cut(s)	88, 133, 475, 816, 829
Hpy188III	TCNNGA	5 cut(s)	34, 173, 205, 660, 836
Hpy8I	GTNNAC	2 cut(s)	283, 530
HpyAV	CCTTC	4 cut(s)	153, 257, 657, 692
HpyCH4III	ACNGT	3 cut(s)	280, 597, 796
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	6 cut(s)	4, 362, 414, 496, 593, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 165, 797, 806
HpyF3I	CTNAG	1 cut(s)	472
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	3 cut(s)	196, 356, 542
HspAI	GCGC	1 cut(s)	216
KspI	CCGCGG	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	316, 571
LguI	GCTCTTC	1 cut(s)	807
LmnI	GCTCC	2 cut(s)	418, 540
Lsp1109I	GCAGC	3 cut(s)	374, 502, 524
MaeI	CTAG	3 cut(s)	11, 161, 429
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	2 cut(s)	436, 640
MalI	GATC	2 cut(s)	318, 573
MboI	GATC	2 cut(s)	316, 571
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	2 cut(s)	567, 728
MlyI	GAGTC	3 cut(s)	433, 510, 768
MmeI	TCCRAC	2 cut(s)	120, 670
MseI	TTAA	3 cut(s)	240, 377, 650
MspA1I	CMGCKG	2 cut(s)	108, 515
MspI	CCGG	3 cut(s)	286, 291, 778
MspR9I	CCNGG	2 cut(s)	292, 779
Mva1269I	GAATGC	1 cut(s)	59
MvnI	CGCG	4 cut(s)	35, 108, 168, 216
MwoI	GCNNNNNNNGC	4 cut(s)	120, 165, 797, 806
NciI	CCSGG	2 cut(s)	292, 779
NdeII	GATC	2 cut(s)	316, 571
NlaIII	CATG	3 cut(s)	196, 356, 542
NlaIV	GGNNCC	2 cut(s)	536, 850
NmuCI	GTSAC	1 cut(s)	436
NruI	TCGCGA	1 cut(s)	35
NspI	RCATGY	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	807
PctI	GAATGC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	553, 830
PflMI	CCANNNNNTGG	1 cut(s)	544
PinAI	ACCGGT	1 cut(s)	285
PkrI	GCNGC	3 cut(s)	364, 514, 517
PleI	GAGTC	3 cut(s)	433, 509, 768
PpsI	GAGTC	3 cut(s)	433, 509, 768
PshAI	GACNNNNGTC	1 cut(s)	200
Psp1406I	AACGTT	1 cut(s)	457
PspFI	CCCAGC	2 cut(s)	421, 740
PspN4I	GGNNCC	2 cut(s)	536, 850
PspPI	GGNCC	4 cut(s)	283, 288, 692, 764
PsuI	RGATCY	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	515
RruI	TCGCGA	1 cut(s)	35
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
Rsr2I	CGGWCCG	1 cut(s)	288
RsrII	CGGWCCG	1 cut(s)	288
SacII	CCGCGG	1 cut(s)	109
SapI	GCTCTTC	1 cut(s)	807
SaqAI	TTAA	3 cut(s)	240, 377, 650
SatI	GCNGC	3 cut(s)	363, 513, 516
Sau3AI	GATC	2 cut(s)	316, 571
Sau96I	GGNCC	4 cut(s)	283, 288, 692, 764
SchI	GAGTC	3 cut(s)	433, 510, 768
ScrFI	CCNGG	2 cut(s)	292, 779
SduI	GDGCHC	1 cut(s)	344
SfcI	CTRYAG	1 cut(s)	792
Sfr303I	CCGCGG	1 cut(s)	109
SgrBI	CCGCGG	1 cut(s)	109
SinI	GGWCC	3 cut(s)	283, 288, 692
SmlI	CTYRAG	2 cut(s)	205, 834
SmoI	CTYRAG	2 cut(s)	205, 834
Sse9I	AATT	2 cut(s)	567, 728
SseBI	AGGCCT	1 cut(s)	159
SsiI	CCGC	4 cut(s)	106, 108, 384, 617
SspMI	CTAG	3 cut(s)	11, 161, 429
StuI	AGGCCT	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	290, 777
StyI	CCWWGG	2 cut(s)	150, 309
TaaI	ACNGT	3 cut(s)	280, 597, 796
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	3 cut(s)	55, 388, 772
TasI	AATT	2 cut(s)	567, 728
TfiI	GAWTC	2 cut(s)	553, 830
Tru1I	TTAA	3 cut(s)	240, 377, 650
Tru9I	TTAA	3 cut(s)	240, 377, 650
TscAI	CASTG	3 cut(s)	353, 679, 801
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	3 cut(s)	362, 512, 515
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	3 cut(s)	555, 578, 741
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	3 cut(s)	353, 679, 801
Van91I	CCANNNNNTGG	1 cut(s)	544
VpaK11BI	GGWCC	3 cut(s)	283, 288, 692
XceI	RCATGY	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	3 cut(s)	11, 161, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.