Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006785

Physical Location & Seq

Genomic Coordinates Reverse (-)

16334338 .. 16337434

Gene Structure 3097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G149200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCAAACCCTAACGCCAATACGGCCTCGTTTTGCAAGGCTGTGGAGCTTGAATCCTTCGTCGCTCTCTATCAGAACCTTGAGCCCTCGAGCATTCTCTTCTTCTTCTTCTTCTTCAGATTACTCCAACCAGTCCCGCGGTGGCCTCCCTCGCTTCTTCTCCGAGCTCCTCCCTACTTCCAAGGGAGGCATAGTTCGCGTACAAGGCGATGAGTTCTGGCACATGACCAAAGTTTTAAGATTGCGCACAAACGATAGGGTAGAGCTCTTCAATGGGAAAGGAGGTTTGATACAAGGTTTAATACAGAGCGTCGACCGCTCTGGACTTGATTTTGTGGCATTGGAAGATCCAAAGTCAGTTCTTCCACAGAGCACACAATGGCATGTATTTGCAGCTTTTGGTACTTTAAAGGGTGGTCGAGCCGATTGGCTTGTTGAGAAATGCACGGAGCTCGGGGCTAGTAGTTTAACTCCTCTGCTGACAGAACGGTCTCCTACTGTCTCAGAAAATCGACTGGACAGGTTGCAGCGTGTCAATGTGGCAGCAGCTAAACAATGTCAACGGCTGCATGAAATGATCTTGAATCCTCCAAAGAAAATTAATGGCCTTTTACCTCTTGTTGCAGAGTCAAAGCTAGCTTTTTTGGCAGTTGCAGAAGGTACTCCTCTTGTTAGTGCATTAACTTTGTCAGGAACGGAGTCCGGTGGGTTGATTGTGGTTGGACCTGAAGGTGACTTCACTGAGAAAGAGGTGAATGAATTAATGCAAGCTGGTGCTATCTCTGTTGGTCTTGGCCCACATCGATTACGGGTTGAAACTGCAACTGTGGCTCTTCTGGCAACTCTCATGTTGTGGTCTGATTCTCAAAAAACATGCGATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

295

Amino Acids

31.95

Weight (kDa)

9.07

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50000 AT1G50000 AT1G50000 AT1G50000 AT1G50000
fragaria_vesca	FvH4_2g03440 FvH4_2g03440 FvH4_2g03440 FvH4_2g03440
malus_domestica	MD10G1109100.v1.1
prunus_persica	Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1
pyrus_communis	pycom10g09440
rosa_chinensis	RchiOBHm_Chr6g0248601
rosa_laevigata	RLG00000015140
rosa_multiflora	Rmu_sc0002553.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213180
rosa_rugosa	Rorug05G0532400 Rorug05G0532400
rosa_samantha	Rh6AG049300 Rh6BG045100 Rh6CG041300 Rh6DG037600
rosa_wichuraiana	Rw6G004260 Rw6G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	487
Acc16I	TGCGCA	1 cut(s)	245
AccBSI	CCGCTC	1 cut(s)	318
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	2 cut(s)	138, 198
AciI	CCGC	3 cut(s)	136, 138, 316
AclWI	GGATC	1 cut(s)	341
AcuI	CTGAAG	2 cut(s)	99, 747
AfaI	GTAC	3 cut(s)	201, 403, 661
AgsI	TTSAA	4 cut(s)	52, 271, 583, 815
AloI	GAACNNNNNNTCC	2 cut(s)	177, 209
AluBI	AGCT	9 cut(s)	48, 166, 265, 395, 451, 548, 634, 638, 770
AluI	AGCT	9 cut(s)	48, 166, 265, 395, 451, 548, 634, 638, 770
Alw21I	GWGCWC	4 cut(s)	168, 267, 374, 453
Alw26I	GTCTC	2 cut(s)	495, 505
AlwI	GGATC	1 cut(s)	341
Ama87I	CYCGRG	2 cut(s)	87, 452
AoxI	GGCC	4 cut(s)	23, 142, 604, 793
ApeKI	GCWGC	5 cut(s)	392, 526, 542, 545, 565
AseI	ATTAAT	2 cut(s)	600, 761
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	722, 794
AsuHPI	GGTGA	2 cut(s)	743, 763
AsuNHI	GCTAGC	1 cut(s)	634
AvaI	CYCGRG	2 cut(s)	87, 452
AvaII	GGWCC	1 cut(s)	722
BanII	GRGCYC	4 cut(s)	86, 168, 267, 453
Bbv12I	GWGCWC	4 cut(s)	168, 267, 374, 453
BbvI	GCAGC	5 cut(s)	404, 538, 552, 554, 557
BceAI	ACGGC	2 cut(s)	38, 578
BcgI	CGANNNNNNTGC	2 cut(s)	433, 467
BcoDI	GTCTC	2 cut(s)	495, 505
BfaI	CTAG	2 cut(s)	459, 635
BglI	GCCNNNNNGGC	1 cut(s)	22
BisI	GCNGC	5 cut(s)	393, 527, 543, 546, 566
BlsI	GCNGC	5 cut(s)	394, 528, 544, 547, 567
Bme18I	GGWCC	1 cut(s)	722
BmeT110I	CYCGRG	2 cut(s)	87, 452
BmgT120I	GGNCC	2 cut(s)	722, 794
BmtI	GCTAGC	1 cut(s)	638
BpuEI	CTTGAG	1 cut(s)	100
Bsa29I	ATCGAT	1 cut(s)	802
BsaI	GGTCTC	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	136, 180
BsaWI	WCCGGW	1 cut(s)	701
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bse1I	ACTGG	2 cut(s)	130, 519
BseCI	ATCGAT	1 cut(s)	802
BseDI	CCNNGG	2 cut(s)	136, 180
BseMII	CTCAG	2 cut(s)	516, 732
BseNI	ACTGG	2 cut(s)	130, 519
BseRI	GAGGAG	3 cut(s)	158, 462, 654
BseXI	GCAGC	5 cut(s)	404, 538, 552, 554, 557
Bsh1236I	CGCG	2 cut(s)	138, 198
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	4 cut(s)	25, 144, 606, 795
BshVI	ATCGAT	1 cut(s)	802
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	4 cut(s)	168, 267, 374, 453
BsiHKCI	CYCGRG	2 cut(s)	87, 452
BsiSI	CCGG	1 cut(s)	702
BslFI	GGGAC	1 cut(s)	118
BsmAI	GTCTC	2 cut(s)	495, 505
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	4 cut(s)	25, 144, 606, 795
Bso31I	GGTCTC	1 cut(s)	495
BsoBI	CYCGRG	2 cut(s)	87, 452
Bsp1286I	GDGCHC	5 cut(s)	86, 168, 267, 374, 453
Bsp143I	GATC	2 cut(s)	346, 576
BspACI	CCGC	3 cut(s)	136, 138, 316
BspANI	GGCC	4 cut(s)	25, 144, 606, 795
BspCNI	CTCAG	2 cut(s)	515, 733
BspDI	ATCGAT	1 cut(s)	802
BspFNI	CGCG	2 cut(s)	138, 198
BspOI	GCTAGC	1 cut(s)	638
BspPI	GGATC	1 cut(s)	341
BspQI	GCTCTTC	2 cut(s)	272, 837
BspTNI	GGTCTC	1 cut(s)	495
BsrBI	CCGCTC	1 cut(s)	318
BsrI	ACTGG	2 cut(s)	130, 519
BssECI	CCNNGG	2 cut(s)	136, 180
BssMI	GATC	2 cut(s)	346, 576
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	3 cut(s)	489, 499, 826
Bst6I	CTCTTC	3 cut(s)	103, 272, 837
BstC8I	GCNNGC	2 cut(s)	636, 768
BstDEI	CTNAG	2 cut(s)	502, 741
BstDSI	CCRYGG	1 cut(s)	136
BstFNI	CGCG	2 cut(s)	138, 198
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	349, 579
BstMAI	GTCTC	2 cut(s)	495, 505
BstMBI	GATC	2 cut(s)	346, 576
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 150, 195, 204, 315, 644, 827, 836
BstNSI	RCATGY	2 cut(s)	386, 876
BstUI	CGCG	2 cut(s)	138, 198
BstV1I	GCAGC	5 cut(s)	404, 538, 552, 554, 557
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	802
BsuRI	GGCC	4 cut(s)	25, 144, 606, 795
BsuTUI	ATCGAT	1 cut(s)	802
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	738
Cac8I	GCNNGC	2 cut(s)	636, 768
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	722, 794
Cfr42I	CCGCGG	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	802
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	3 cut(s)	200, 402, 660
CviAII	CATG	5 cut(s)	223, 383, 569, 847, 873
CviQI	GTAC	3 cut(s)	200, 402, 660
DdeI	CTNAG	2 cut(s)	502, 741
DpnI	GATC	2 cut(s)	348, 578
DpnII	GATC	2 cut(s)	346, 576
DraI	TTTAAA	1 cut(s)	408
DrdI	GACNNNNNNGTC	1 cut(s)	487
DseDI	GACNNNNNNGTC	1 cut(s)	487
Eam1104I	CTCTTC	3 cut(s)	103, 272, 837
EarI	CTCTTC	3 cut(s)	103, 272, 837
Ecl136II	GAGCTC	3 cut(s)	166, 265, 451
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	4 cut(s)	86, 168, 267, 453
Eco31I	GGTCTC	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	722
Eco53kI	GAGCTC	3 cut(s)	166, 265, 451
Eco57I	CTGAAG	2 cut(s)	99, 747
Eco88I	CYCGRG	2 cut(s)	87, 452
EcoICRI	GAGCTC	3 cut(s)	166, 265, 451
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	4 cut(s)	86, 168, 267, 453
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	5 cut(s)	226, 386, 572, 850, 876
FaiI	YATR	6 cut(s)	191, 224, 384, 570, 848, 874
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	5 cut(s)	222, 382, 568, 846, 872
FauI	CCCGC	1 cut(s)	143
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	5 cut(s)	393, 527, 543, 546, 566
FriOI	GRGCYC	4 cut(s)	86, 168, 267, 453
Fsp4HI	GCNGC	5 cut(s)	393, 527, 543, 546, 566
FspBI	CTAG	2 cut(s)	459, 635
FspI	TGCGCA	1 cut(s)	245
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	5 cut(s)	393, 527, 543, 546, 566
HaeIII	GGCC	4 cut(s)	25, 144, 606, 795
HapII	CCGG	1 cut(s)	702
HgaI	GACGC	1 cut(s)	298
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	5 cut(s)	226, 386, 572, 850, 876
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	2 cut(s)	313, 560
HindII	GTYRAC	2 cut(s)	313, 560
HinfI	GANTC	5 cut(s)	52, 583, 626, 698, 860
HpaII	CCGG	1 cut(s)	702
HphI	GGTGA	2 cut(s)	743, 763
Hpy166II	GTNNAC	2 cut(s)	313, 560
Hpy188I	TCNGA	5 cut(s)	74, 118, 163, 505, 859
Hpy188III	TCNNGA	3 cut(s)	321, 580, 690
Hpy8I	GTNNAC	2 cut(s)	313, 560
Hpy99I	CGWCG	2 cut(s)	64, 314
HpyAV	CCTTC	3 cut(s)	66, 650, 722
HpyCH4III	ACNGT	3 cut(s)	489, 499, 826
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 150, 195, 204, 315, 644, 827, 836
HpyF3I	CTNAG	2 cut(s)	502, 741
Hsp92II	CATG	5 cut(s)	226, 386, 572, 850, 876
HspAI	GCGC	1 cut(s)	244
KspI	CCGCGG	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	346, 576
LguI	GCTCTTC	2 cut(s)	272, 837
LmnI	GCTCC	3 cut(s)	45, 171, 448
Lsp1109I	GCAGC	5 cut(s)	404, 538, 552, 554, 557
MaeI	CTAG	2 cut(s)	459, 635
MaeIII	GTNAC	1 cut(s)	731
MalI	GATC	2 cut(s)	348, 578
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	2 cut(s)	346, 576
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	5 cut(s)	86, 168, 267, 374, 453
MluCI	AATT	2 cut(s)	597, 758
MlyI	GAGTC	2 cut(s)	635, 707
MmeI	TCCRAC	2 cut(s)	150, 700
MseI	TTAA	7 cut(s)	236, 299, 407, 467, 600, 680, 761
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	92
MvnI	CGCG	2 cut(s)	138, 198
MwoI	GCNNNNNNNGC	8 cut(s)	22, 150, 195, 204, 315, 644, 827, 836
NdeII	GATC	2 cut(s)	346, 576
NheI	GCTAGC	1 cut(s)	634
NlaIII	CATG	5 cut(s)	226, 386, 572, 850, 876
NmuCI	GTSAC	1 cut(s)	731
NsbI	TGCGCA	1 cut(s)	245
NspI	RCATGY	2 cut(s)	386, 876
PaeR7I	CTCGAG	1 cut(s)	87
PciSI	GCTCTTC	2 cut(s)	272, 837
PctI	GAATGC	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	52, 583, 860
PkrI	GCNGC	5 cut(s)	394, 528, 544, 547, 567
PleI	GAGTC	2 cut(s)	634, 706
PpsI	GAGTC	2 cut(s)	634, 706
PshBI	ATTAAT	2 cut(s)	600, 761
Psp124BI	GAGCTC	3 cut(s)	168, 267, 453
PspPI	GGNCC	2 cut(s)	722, 794
PspXI	VCTCGAGB	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	3 cut(s)	201, 403, 661
RsaNI	GTAC	3 cut(s)	200, 402, 660
SacI	GAGCTC	3 cut(s)	168, 267, 453
SacII	CCGCGG	1 cut(s)	139
SalI	GTCGAC	1 cut(s)	311
SapI	GCTCTTC	2 cut(s)	272, 837
SaqAI	TTAA	7 cut(s)	236, 299, 407, 467, 600, 680, 761
SatI	GCNGC	5 cut(s)	393, 527, 543, 546, 566
Sau3AI	GATC	2 cut(s)	346, 576
Sau96I	GGNCC	2 cut(s)	722, 794
SchI	GAGTC	2 cut(s)	635, 707
SduI	GDGCHC	5 cut(s)	86, 168, 267, 374, 453
Sfr274I	CTCGAG	1 cut(s)	87
Sfr303I	CCGCGG	1 cut(s)	139
SgrBI	CCGCGG	1 cut(s)	139
SinI	GGWCC	1 cut(s)	722
SlaI	CTCGAG	1 cut(s)	87
SmlI	CTYRAG	2 cut(s)	79, 87
SmoI	CTYRAG	2 cut(s)	79, 87
Sse9I	AATT	2 cut(s)	597, 758
SsiI	CCGC	3 cut(s)	136, 138, 316
SspMI	CTAG	2 cut(s)	459, 635
SstI	GAGCTC	3 cut(s)	168, 267, 453
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	3 cut(s)	489, 499, 826
TaqI	TCGA	5 cut(s)	88, 312, 418, 511, 802
TasI	AATT	2 cut(s)	597, 758
TfiI	GAWTC	3 cut(s)	52, 583, 860
Tru1I	TTAA	7 cut(s)	236, 299, 407, 467, 600, 680, 761
Tru9I	TTAA	7 cut(s)	236, 299, 407, 467, 600, 680, 761
TscAI	CASTG	1 cut(s)	745
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	5 cut(s)	392, 526, 542, 545, 565
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	2 cut(s)	585, 771
TspGWI	ACGGA	2 cut(s)	461, 710
TspRI	CASTG	1 cut(s)	745
VpaK11BI	GGWCC	1 cut(s)	722
VspI	ATTAAT	2 cut(s)	600, 761
XceI	RCATGY	2 cut(s)	386, 876
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XhoI	CTCGAG	1 cut(s)	87
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	2 cut(s)	459, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.