Rh6CG041300

Ribosomal RNA small subunit methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006785
Physical Location & Seq
Forward (+)
3969775 .. 3989090
19316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG041300.1

Sequence Viewer

Length: 639 bp
ATGTGTGCAAGGGTAGAGCAGTTTAATGGGAAAGGAGGTTTAGTAAAAGGAGTGATACAGACGGTGGACTGGTCTGGGCTCCATTTTGTGGCCCTGGAAGATCCAAAGTTGGTTCTTCCACAGAGCACGCAGTGGCATGTGTTTGCAGCTTTTGGTACTTTGAAGGGCGGTCGAGCTGATTGGCTTGTTGAGAAATGCACGGAGCTGGGGGCTAGTAGTGTAACTCCTCTGCTGACAGAACGTTCTCCTACTATCTCAGAAAATCGGCTGGATAGGTTGCAGAGAGTCAATATGGCAGCTGCTAAACAATGTCAACGGCTCCATGAAATGGTATTGAATCCCCCAATGAAATTTGATCGTCTTTTGCCCCTTGTTGCACAGTCCAAGCTATCTTTTTTGGCGGTTGCAGAAGCTACTCCTCTTGTTACTGCATTAACTTCGTCAAGAAGGGAGACCAGTGGGCTGATTGTGGTTGGACCAGAAGGCGACTTCACGGAGAAAGAGGTGTATGAATTGATAAAAGCTGGGTCAATCTCTGTTGGTCTTGGCCCACATCGACTCCGGGTAGAAACTGCTACAGTGGCTCTTCTGGCAACTCTGATGTTATGGTCTGATTCTCAAGAAAAGTGTGGTTCCTAA

Protein Analysis

212

Amino Acids

23.11

Weight (kDa)

7.7

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltrans_RNA PF04452 45 - 200 5.2e-38 RNA methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 88, 328
AciI CCGC 2 cut(s) 168, 401
AclI AACGTT 1 cut(s) 241
AclWI GGATC 1 cut(s) 95
AcsI RAATTY 1 cut(s) 350
AdeI CACNNNGTG 1 cut(s) 132
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 2 cut(s) 88, 328
AgsI TTSAA 2 cut(s) 163, 337
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 7 cut(s) 149, 176, 205, 299, 388, 413, 524
AluI AGCT 7 cut(s) 149, 176, 205, 299, 388, 413, 524
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 446
AlwI GGATC 1 cut(s) 95
AoxI GGCC 2 cut(s) 90, 547
ApeKI GCWGC 3 cut(s) 146, 296, 299
ApoI RAATTY 1 cut(s) 350
AspS9I GGNCC 3 cut(s) 91, 476, 548
AsuC2I CCSGG 1 cut(s) 563
AvaII GGWCC 1 cut(s) 476
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 3 cut(s) 158, 286, 308
BceAI ACGGC 1 cut(s) 332
BcgI CGANNNNNNTGC 2 cut(s) 420, 454
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 1 cut(s) 563
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 576
BisI GCNGC 3 cut(s) 147, 297, 300
BlsI GCNGC 3 cut(s) 148, 298, 301
Bme1390I CCNGG 2 cut(s) 95, 563
Bme18I GGWCC 1 cut(s) 476
BmgT120I GGNCC 3 cut(s) 91, 476, 548
BmiI GGNNCC 3 cut(s) 80, 320, 634
BmrFI CCNGG 2 cut(s) 95, 563
BpuEI CTTGAG 1 cut(s) 603
BpuMI CCSGG 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 93
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 543, 573
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 328
Bse1I ACTGG 2 cut(s) 74, 456
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 88, 328
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 2 cut(s) 74, 456
BseRI GAGGAG 2 cut(s) 216, 408
BseXI GCAGC 3 cut(s) 158, 286, 308
BseYI CCCAGC 2 cut(s) 205, 524
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 2 cut(s) 92, 549
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 562
BslI CCNNNNNNNGG 2 cut(s) 88, 328
BsmAI GTCTC 1 cut(s) 446
BsnI GGCC 2 cut(s) 92, 549
Bso31I GGTCTC 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 81, 128
Bsp143I GATC 2 cut(s) 100, 355
BspACI CCGC 2 cut(s) 168, 401
BspANI GGCC 2 cut(s) 92, 549
BspCNI CTCAG 1 cut(s) 269
BspLI GGNNCC 3 cut(s) 80, 320, 634
BspPI GGATC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 591
BspTNI GGTCTC 1 cut(s) 446
BsrI ACTGG 2 cut(s) 74, 456
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 100, 355
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 3 cut(s) 64, 381, 580
Bst6I CTCTTC 1 cut(s) 591
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 256
BstKTI GATC 2 cut(s) 103, 358
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 2 cut(s) 100, 355
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 2 cut(s) 581, 590
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 93, 561
BstSFI CTRYAG 1 cut(s) 576
BstV1I GCAGC 3 cut(s) 158, 286, 308
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 2 cut(s) 92, 549
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 3 cut(s) 137, 463, 585
Cac8I GCNNGC 1 cut(s) 128
Cfr13I GGNCC 3 cut(s) 91, 476, 548
Csp6I GTAC 1 cut(s) 156
CviAII CATG 2 cut(s) 137, 323
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 1 cut(s) 256
DpnI GATC 2 cut(s) 102, 357
DpnII GATC 2 cut(s) 100, 355
DraIII CACNNNGTG 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
Eco24I GRGCYC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 2 cut(s) 140, 326
FaiI YATR 5 cut(s) 138, 293, 324, 510, 607
FatI CATG 2 cut(s) 136, 322
Fnu4HI GCNGC 3 cut(s) 147, 297, 300
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 3 cut(s) 147, 297, 300
FspBI CTAG 1 cut(s) 213
GluI GCNGC 3 cut(s) 147, 297, 300
GsaI CCCAGC 2 cut(s) 209, 528
HaeIII GGCC 2 cut(s) 92, 549
HapII CCGG 1 cut(s) 562
Hin1II CATG 2 cut(s) 140, 326
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
HinfI GANTC 4 cut(s) 285, 337, 558, 614
HpaII CCGG 1 cut(s) 562
Hpy166II GTNNAC 2 cut(s) 67, 314
Hpy188I TCNGA 3 cut(s) 259, 600, 613
Hpy188III TCNNGA 2 cut(s) 444, 620
Hpy8I GTNNAC 2 cut(s) 67, 314
HpyAV CCTTC 3 cut(s) 157, 441, 476
HpyCH4III ACNGT 3 cut(s) 64, 381, 580
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 7 cut(s) 8, 146, 198, 280, 377, 407, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 590
HpyF3I CTNAG 1 cut(s) 256
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 2 cut(s) 140, 326
Kzo9I GATC 2 cut(s) 100, 355
LguI GCTCTTC 1 cut(s) 591
LmnI GCTCC 3 cut(s) 84, 202, 324
Lsp1109I GCAGC 3 cut(s) 158, 286, 308
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 2 cut(s) 220, 424
MalI GATC 2 cut(s) 102, 357
MboI GATC 2 cut(s) 100, 355
MboII GAAGA 3 cut(s) 107, 110, 578
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 2 cut(s) 81, 128
MluCI AATT 2 cut(s) 350, 512
MlyI GAGTC 2 cut(s) 294, 552
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 4 cut(s) 29, 237, 429, 496
MseI TTAA 2 cut(s) 24, 434
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 1 cut(s) 562
MspR9I CCNGG 2 cut(s) 95, 563
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 581, 590
NciI CCSGG 1 cut(s) 563
NdeII GATC 2 cut(s) 100, 355
NlaIII CATG 2 cut(s) 140, 326
NlaIV GGNNCC 3 cut(s) 80, 320, 634
NspI RCATGY 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 591
PfeI GAWTC 2 cut(s) 337, 614
PflMI CCANNNNNTGG 2 cut(s) 88, 328
PkrI GCNGC 3 cut(s) 148, 298, 301
PleI GAGTC 2 cut(s) 293, 552
PpsI GAGTC 2 cut(s) 293, 552
Psp1406I AACGTT 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 93
PspFI CCCAGC 2 cut(s) 205, 524
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 3 cut(s) 80, 320, 634
PspPI GGNCC 3 cut(s) 91, 476, 548
PsuI RGATCY 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 591
SaqAI TTAA 2 cut(s) 24, 434
SatI GCNGC 3 cut(s) 147, 297, 300
Sau3AI GATC 2 cut(s) 100, 355
Sau96I GGNCC 3 cut(s) 91, 476, 548
SchI GAGTC 2 cut(s) 294, 552
ScrFI CCNGG 2 cut(s) 95, 563
SduI GDGCHC 2 cut(s) 81, 128
SfcI CTRYAG 1 cut(s) 576
SinI GGWCC 1 cut(s) 476
SmlI CTYRAG 1 cut(s) 618
SmoI CTYRAG 1 cut(s) 618
Sse9I AATT 2 cut(s) 350, 512
SsiI CCGC 2 cut(s) 168, 401
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 2 cut(s) 93, 561
TaaI ACNGT 3 cut(s) 64, 381, 580
TaiI ACGT 1 cut(s) 244
TaqI TCGA 2 cut(s) 172, 556
TasI AATT 2 cut(s) 350, 512
TfiI GAWTC 2 cut(s) 337, 614
Tru1I TTAA 2 cut(s) 24, 434
Tru9I TTAA 2 cut(s) 24, 434
TscAI CASTG 3 cut(s) 137, 463, 585
TseI GCWGC 3 cut(s) 146, 296, 299
TspDTI ATGAA 3 cut(s) 339, 362, 525
TspGWI ACGGA 2 cut(s) 215, 509
TspRI CASTG 3 cut(s) 137, 463, 585
Van91I CCANNNNNTGG 2 cut(s) 88, 328
VpaK11BI GGWCC 1 cut(s) 476
XapI RAATTY 1 cut(s) 350
XceI RCATGY 1 cut(s) 140
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.