Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006785

Physical Location & Seq

Genomic Coordinates Forward (+)

2762338 .. 2765830

Gene Structure 3493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03440.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCAGAGCTTATTAGCACCAATACGACCTCGTTTCACATCATTAAGGTTCCTCACAACCTTCCGAGCATTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGATTACTCCAACCAGTCCCGCGGTGGCCTCCCTCGCTTCTTCTCCGAACGCCTCCCTTCTTCCAAGGGAGGCCTAGTTCGTGTACAAGACGATGAGTTCTGGCACATGACCAAAGTCTTGAGATTACGCGCCAACGATAGGGTAGAGCTGTTTAATGGGAAAGGAGGCTTGGTGGAAGGTGTCATACAGACCGTGGACCGGTCCGGGTTAGATTTTATGGCATTGGAAGATCCAAAGGTGGTTCTCCCACAGAGCACGCAGTGGCATGTGTTTGCAGCTTTTGGTACTTTAAAGGGCGGTCGAGCTGATTGGCTTGTTGAGAAATGCACAGAGCTGGGGGCTGGTAGTGTGACTCCTCTGCTGACGGAGCGGTCTCCTTCTATCTCAGGAAATCGGCTGGATAGGTTGCAGAGAGTCAATATGGCAGCTGCTAAACAATGCCAACGGCTCCATGAAATGGTGTTGAATCCCCCAATGAAAATCGATGGTATTTTGCCTCTTGTTGCACAGTCCAAGCTATCTTTTTTGGCGGTTGCAGAAGCTACTTCTCTTGTTACTGCATTAACTTCATCAGGAAGGGAGACCAGTGGACTGATTGTGGTTGGACCAGAAGGCGACTTCACGGAAAAAGAGGTGAATGAATTGATAAAAGCTGGATGTATCTCTGTTGGTCTTGGTCCGCATCGACTCCGTGTGGAAACTGCAACAGTGGCTCTTCTGGCCACTCTGATGTTATGGTCTGATTCTCAAGAAACATGTGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

290

Amino Acids

31.41

Weight (kDa)

8.73

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltrans_RNA	PF04452	45 - 200	6.9e-37	RNA methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50000 AT1G50000 AT1G50000 AT1G50000 AT1G50000
fragaria_vesca	FvH4_2g03440 FvH4_2g03440 FvH4_2g03440 FvH4_2g03440
malus_domestica	MD10G1109100.v1.1
prunus_persica	Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1
pyrus_communis	pycom10g09440
rosa_chinensis	RchiOBHm_Chr6g0248601
rosa_laevigata	RLG00000015140
rosa_multiflora	Rmu_sc0002553.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213180
rosa_rugosa	Rorug05G0532400 Rorug05G0532400
rosa_samantha	Rh6AG049300 Rh6BG045100 Rh6CG041300 Rh6DG037600
rosa_wichuraiana	Rw6G004260 Rw6G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	472
AccB7I	CCANNNNNTGG	1 cut(s)	559
AccBSI	CCGCTC	1 cut(s)	472
AccII	CGCG	2 cut(s)	123, 231
AciI	CCGC	6 cut(s)	121, 123, 399, 472, 632, 782
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	1 cut(s)	822
AcuI	CTGAAG	1 cut(s)	84
AdeI	CACNNNGTG	1 cut(s)	363
AfaI	GTAC	2 cut(s)	186, 388
AfiI	CCNNNNNNNGG	3 cut(s)	240, 300, 559
AflIII	ACRYGT	1 cut(s)	857
AgeI	ACCGGT	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	568
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AloI	GAACNNNNNNTCC	2 cut(s)	162, 194
AluBI	AGCT	9 cut(s)	9, 250, 380, 407, 436, 530, 619, 644, 755
AluI	AGCT	9 cut(s)	9, 250, 380, 407, 436, 530, 619, 644, 755
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	2 cut(s)	480, 677
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	3 cut(s)	127, 172, 822
ApeKI	GCWGC	3 cut(s)	377, 527, 530
AsiGI	ACCGGT	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	4 cut(s)	298, 303, 707, 779
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	748
AvaII	GGWCC	4 cut(s)	298, 303, 707, 779
BalI	TGGCCA	1 cut(s)	824
BarI	GAAGNNNNNNTAC	2 cut(s)	270, 302
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	3 cut(s)	389, 517, 539
BccI	CCATC	1 cut(s)	581
BceAI	ACGGC	1 cut(s)	563
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	480, 677
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	3 cut(s)	378, 528, 531
BlsI	GCNGC	3 cut(s)	379, 529, 532
Bme1390I	CCNGG	1 cut(s)	307
Bme18I	GGWCC	4 cut(s)	298, 303, 707, 779
BmgT120I	GGNCC	4 cut(s)	298, 303, 707, 779
BmiI	GGNNCC	2 cut(s)	50, 551
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	793
BoxI	GACNNNNGTC	1 cut(s)	215
BpuEI	CTTGAG	2 cut(s)	241, 834
BpuMI	CCSGG	1 cut(s)	307
Bsa29I	ATCGAT	1 cut(s)	585
BsaI	GGTCTC	2 cut(s)	480, 677
BsaJI	CCNNGG	3 cut(s)	121, 165, 294
BsaWI	WCCGGW	1 cut(s)	300
BsaXI	ACNNNNNCTCC	4 cut(s)	162, 192, 258, 288
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 300, 559
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	2 cut(s)	115, 687
BseCI	ATCGAT	1 cut(s)	585
BseDI	CCNNGG	3 cut(s)	121, 165, 294
BseGI	GGATG	1 cut(s)	764
BseLI	CCNNNNNNNGG	3 cut(s)	240, 300, 559
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	2 cut(s)	115, 687
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	3 cut(s)	389, 517, 539
BseYI	CCCAGC	1 cut(s)	436
Bsh1236I	CGCG	2 cut(s)	123, 231
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	3 cut(s)	129, 174, 824
BshTI	ACCGGT	1 cut(s)	300
BshVI	ATCGAT	1 cut(s)	585
BsiEI	CGRYCG	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	301, 306
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	3 cut(s)	240, 300, 559
BsmAI	GTCTC	2 cut(s)	480, 677
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	129, 174, 824
Bso31I	GGTCTC	2 cut(s)	480, 677
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp1407I	TGTACA	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	6 cut(s)	121, 123, 399, 472, 632, 782
BspANI	GGCC	3 cut(s)	129, 174, 824
BspCNI	CTCAG	1 cut(s)	500
BspDI	ATCGAT	1 cut(s)	585
BspFNI	CGCG	2 cut(s)	123, 231
BspLI	GGNNCC	2 cut(s)	50, 551
BspPI	GGATC	1 cut(s)	326
BspQI	GCTCTTC	1 cut(s)	822
BspTNI	GGTCTC	2 cut(s)	480, 677
BsrBI	CCGCTC	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	115, 687
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	3 cut(s)	121, 165, 294
BssMI	GATC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	3 cut(s)	295, 612, 811
Bst6I	CTCTTC	2 cut(s)	79, 822
BstAUI	TGTACA	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	487
BstDSI	CCRYGG	2 cut(s)	121, 294
BstF5I	GGATG	1 cut(s)	764
BstFNI	CGCG	2 cut(s)	123, 231
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	2 cut(s)	480, 677
BstMBI	GATC	1 cut(s)	331
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	4 cut(s)	135, 469, 812, 821
BstNSI	RCATGY	2 cut(s)	371, 861
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	305
BstUI	CGCG	2 cut(s)	123, 231
BstV1I	GCAGC	3 cut(s)	389, 517, 539
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	585
BsuRI	GGCC	3 cut(s)	129, 174, 824
BsuTUI	ATCGAT	1 cut(s)	585
BtgI	CCRYGG	2 cut(s)	121, 294
BtsCI	GGATG	1 cut(s)	764
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	3 cut(s)	368, 694, 816
Cac8I	GCNNGC	1 cut(s)	359
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	4 cut(s)	298, 303, 707, 779
Cfr42I	CCGCGG	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	585
CpoI	CGGWCCG	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	185, 387
CspAI	ACCGGT	1 cut(s)	300
CspI	CGGWCCG	1 cut(s)	303
CviAII	CATG	4 cut(s)	208, 368, 554, 858
CviQI	GTAC	2 cut(s)	185, 387
DdeI	CTNAG	1 cut(s)	487
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DraI	TTTAAA	1 cut(s)	393
DraIII	CACNNNGTG	1 cut(s)	363
DrdI	GACNNNNNNGTC	1 cut(s)	472
DseDI	GACNNNNNNGTC	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	822
Eam1104I	CTCTTC	2 cut(s)	79, 822
EarI	CTCTTC	2 cut(s)	79, 822
Eco130I	CCWWGG	1 cut(s)	165
Eco147I	AGGCCT	1 cut(s)	174
Eco31I	GGTCTC	2 cut(s)	480, 677
Eco47I	GGWCC	4 cut(s)	298, 303, 707, 779
Eco57I	CTGAAG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	4 cut(s)	211, 371, 557, 861
FaiI	YATR	8 cut(s)	209, 287, 320, 369, 524, 555, 838, 859
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	4 cut(s)	207, 367, 553, 857
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	3 cut(s)	378, 528, 531
FokI	GGATG	1 cut(s)	771
Fsp4HI	GCNGC	3 cut(s)	378, 528, 531
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	3 cut(s)	378, 528, 531
GsaI	CCCAGC	1 cut(s)	440
HaeIII	GGCC	3 cut(s)	129, 174, 824
HapII	CCGG	2 cut(s)	301, 306
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	4 cut(s)	211, 371, 557, 861
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	5 cut(s)	454, 516, 568, 789, 845
HpaII	CCGG	2 cut(s)	301, 306
HphI	GGTGA	1 cut(s)	748
Hpy166II	GTNNAC	3 cut(s)	185, 298, 692
Hpy188I	TCNGA	5 cut(s)	65, 103, 148, 831, 844
Hpy188III	TCNNGA	4 cut(s)	220, 489, 675, 851
Hpy8I	GTNNAC	3 cut(s)	185, 298, 692
HpyAV	CCTTC	6 cut(s)	70, 168, 272, 489, 672, 707
HpyCH4III	ACNGT	3 cut(s)	295, 612, 811
HpyCH4V	TGCA	8 cut(s)	4, 377, 429, 511, 608, 638, 662, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	135, 469, 812, 821
HpyF3I	CTNAG	1 cut(s)	487
Hsp92II	CATG	4 cut(s)	211, 371, 557, 861
HspAI	GCGC	1 cut(s)	231
KspI	CCGCGG	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	331
LguI	GCTCTTC	1 cut(s)	822
LmnI	GCTCC	2 cut(s)	469, 555
Lsp1109I	GCAGC	3 cut(s)	389, 517, 539
LweI	GCATC	1 cut(s)	793
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	451, 655
MalI	GATC	1 cut(s)	333
MbiI	CCGCTC	1 cut(s)	472
MboI	GATC	1 cut(s)	331
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	359
MlsI	TGGCCA	1 cut(s)	824
MluCI	AATT	1 cut(s)	743
MluNI	TGGCCA	1 cut(s)	824
MlyI	GAGTC	3 cut(s)	448, 525, 783
MmeI	TCCRAC	2 cut(s)	135, 685
Mox20I	TGGCCA	1 cut(s)	824
MscI	TGGCCA	1 cut(s)	824
MseI	TTAA	5 cut(s)	44, 255, 392, 665, 868
MslI	CAYNNNNRTG	1 cut(s)	830
Msp20I	TGGCCA	1 cut(s)	824
MspA1I	CMGCKG	2 cut(s)	123, 530
MspI	CCGG	2 cut(s)	301, 306
MspR9I	CCNGG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	68
MvnI	CGCG	2 cut(s)	123, 231
MwoI	GCNNNNNNNGC	4 cut(s)	135, 469, 812, 821
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	4 cut(s)	211, 371, 557, 861
NlaIV	GGNNCC	2 cut(s)	50, 551
NmuCI	GTSAC	1 cut(s)	451
NspI	RCATGY	2 cut(s)	371, 861
PceI	AGGCCT	1 cut(s)	174
PciI	ACATGT	1 cut(s)	857
PciSI	GCTCTTC	1 cut(s)	822
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	568, 845
PflMI	CCANNNNNTGG	1 cut(s)	559
PinAI	ACCGGT	1 cut(s)	300
PkrI	GCNGC	3 cut(s)	379, 529, 532
PleI	GAGTC	3 cut(s)	448, 524, 783
PpsI	GAGTC	3 cut(s)	448, 524, 783
PscI	ACATGT	1 cut(s)	857
PshAI	GACNNNNGTC	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	50, 551
PspPI	GGNCC	4 cut(s)	298, 303, 707, 779
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	2 cut(s)	186, 388
RsaNI	GTAC	2 cut(s)	185, 387
RseI	CAYNNNNRTG	1 cut(s)	830
Rsr2I	CGGWCCG	1 cut(s)	303
RsrII	CGGWCCG	1 cut(s)	303
SacII	CCGCGG	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	822
SaqAI	TTAA	5 cut(s)	44, 255, 392, 665, 868
SatI	GCNGC	3 cut(s)	378, 528, 531
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	4 cut(s)	298, 303, 707, 779
SchI	GAGTC	3 cut(s)	448, 525, 783
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	359
SfaNI	GCATC	1 cut(s)	793
Sfr303I	CCGCGG	1 cut(s)	124
SgrBI	CCGCGG	1 cut(s)	124
SinI	GGWCC	4 cut(s)	298, 303, 707, 779
SmiMI	CAYNNNNRTG	1 cut(s)	830
SmlI	CTYRAG	2 cut(s)	220, 849
SmoI	CTYRAG	2 cut(s)	220, 849
Sse9I	AATT	1 cut(s)	743
SseBI	AGGCCT	1 cut(s)	174
SsiI	CCGC	6 cut(s)	121, 123, 399, 472, 632, 782
SspMI	CTAG	1 cut(s)	176
StuI	AGGCCT	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	3 cut(s)	295, 612, 811
TaqI	TCGA	3 cut(s)	403, 585, 787
TasI	AATT	1 cut(s)	743
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	568, 845
Tru1I	TTAA	5 cut(s)	44, 255, 392, 665, 868
Tru9I	TTAA	5 cut(s)	44, 255, 392, 665, 868
TscAI	CASTG	3 cut(s)	368, 694, 816
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	3 cut(s)	377, 527, 530
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	4 cut(s)	570, 593, 660, 756
TspGWI	ACGGA	3 cut(s)	482, 740, 782
TspRI	CASTG	3 cut(s)	368, 694, 816
Van91I	CCANNNNNTGG	1 cut(s)	559
VpaK11BI	GGWCC	4 cut(s)	298, 303, 707, 779
XceI	RCATGY	2 cut(s)	371, 861
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.