Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006785

Physical Location & Seq

Genomic Coordinates Forward (+)

4562495 .. 4565862

Gene Structure 3368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22283

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCAGAGCCTAGCACCAATACAACCTCGTTTCGCGAAGTGCCTCACAACCTTTCGAGCATTCTCATCTTCTTCTTCGTCTTCAGATTACTCCAACCAGTCCCGCGGTGGCCTCCCTCGCTTCTTCTCCGAATGCCTCCCTTCTTCCAAGGCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTACTTCGTCACTGGAGGCCTAGTTCGCGTTCAAGATGATGAGTTCTGGCACATGACTAAAGTCTTGAGATTACGCGCCAATGATAGGGTAGAGCTGTTTAATGGGAAAGGAGGTTTGGTAGAAGGAGTAATACAAACGGTGGACCGGTCGGGGCTTGATTTCGTGGCCTTGGAAGATCCAAAGTTGGTTCTTCCACAGAGCACGCAGTGGCATGTGTTTGCAGCTTTTGGTACTTTAAAGGGCGGTCGAGCTGATTGGCTTGTTGAGAAATGCACGGAGCTGGGGGCTAGTAGTGTAACTCCTCTGCTGACAGAACGTTCTCCTACTATCTCGGAAAATAGGCTGGATAGGTTGCAGAGAGTCAATATGGCAGCTGCTAAACAATGTCAACGGCTCCATGAAATGGTATTGAATCCCCCAATGAAAATTGATCGTCTTTTGCCCCTTGTTGCACAGTCCAAGCTATCTTTTTTGGCGGTTGCAGAAGCTACTCCTCTTGTTACTGCATTAACTTCGTCAAGAAGGGAGACCAGTGGACTGATTGTGATTGGACCAGAAGGCGACTTCACGGAGAAAGAGGTGTATGAATTGATAAAAGCTGGGTCAATCTCTGTTGGCCTTGGCCCACATCGACTCCGGGTAGAAACTGCTACGGTGGCTCTTCTGGCAACTCTGATGTTATGGTCTGATTCTCAAGAAAAGTGTGGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

301

Amino Acids

32.94

Weight (kDa)

8.53

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA_4	PF20260	75 - 119	2.6e-12	RNA methyltransferase PUA domain
Methyltrans_RNA	PF04452	134 - 289	3.4e-37	RNA methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50000 AT1G50000 AT1G50000 AT1G50000 AT1G50000
fragaria_vesca	FvH4_2g03440 FvH4_2g03440 FvH4_2g03440 FvH4_2g03440
malus_domestica	MD10G1109100.v1.1
prunus_persica	Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1
pyrus_communis	pycom10g09440
rosa_chinensis	RchiOBHm_Chr6g0248601
rosa_laevigata	RLG00000015140
rosa_multiflora	Rmu_sc0002553.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213180
rosa_rugosa	Rorug05G0532400 Rorug05G0532400
rosa_samantha	Rh6AG049300 Rh6BG045100 Rh6CG041300 Rh6DG037600
rosa_wichuraiana	Rw6G004260 Rw6G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	595
AccII	CGCG	4 cut(s)	35, 105, 219, 267
AciI	CCGC	4 cut(s)	103, 105, 435, 668
AclI	AACGTT	1 cut(s)	508
AclWI	GGATC	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	399
AfaI	GTAC	1 cut(s)	424
AfiI	CCNNNNNNNGG	2 cut(s)	276, 595
AgeI	ACCGGT	1 cut(s)	336
AgsI	TTSAA	2 cut(s)	224, 604
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AloI	GAACNNNNNNTCC	2 cut(s)	198, 230
AluBI	AGCT	8 cut(s)	286, 416, 443, 472, 566, 655, 680, 791
AluI	AGCT	8 cut(s)	286, 416, 443, 472, 566, 655, 680, 791
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	713
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	5 cut(s)	109, 208, 357, 808, 814
ApeKI	GCWGC	3 cut(s)	413, 563, 566
AsiGI	ACCGGT	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	334, 743, 815
AsuC2I	CCSGG	1 cut(s)	830
AvaII	GGWCC	2 cut(s)	334, 743
BarI	GAAGNNNNNNTAC	2 cut(s)	306, 338
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	3 cut(s)	425, 553, 575
BceAI	ACGGC	1 cut(s)	599
BcgI	CGANNNNNNTGC	2 cut(s)	687, 721
BcnI	CCSGG	1 cut(s)	830
BcoDI	GTCTC	1 cut(s)	713
BfaI	CTAG	3 cut(s)	11, 212, 480
BisI	GCNGC	3 cut(s)	414, 564, 567
BlsI	GCNGC	3 cut(s)	415, 565, 568
Bme1390I	CCNGG	1 cut(s)	830
Bme18I	GGWCC	2 cut(s)	334, 743
BmgT120I	GGNCC	3 cut(s)	334, 743, 815
BmiI	GGNNCC	2 cut(s)	587, 901
BmrFI	CCNGG	1 cut(s)	830
BoxI	GACNNNNGTC	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	277, 870
BpuMI	CCSGG	1 cut(s)	830
BsaI	GGTCTC	1 cut(s)	713
BsaJI	CCNNGG	4 cut(s)	103, 147, 360, 811
BsaWI	WCCGGW	1 cut(s)	336
BsaXI	ACNNNNNCTCC	6 cut(s)	198, 228, 294, 324, 810, 840
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 595
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	3 cut(s)	97, 208, 723
BseDI	CCNNGG	4 cut(s)	103, 147, 360, 811
BseLI	CCNNNNNNNGG	2 cut(s)	276, 595
BseNI	ACTGG	3 cut(s)	97, 208, 723
BseRI	GAGGAG	2 cut(s)	483, 675
BseXI	GCAGC	3 cut(s)	425, 553, 575
BseYI	CCCAGC	2 cut(s)	472, 791
Bsh1236I	CGCG	4 cut(s)	35, 105, 219, 267
Bsh1285I	CGRYCG	2 cut(s)	341, 439
BshFI	GGCC	5 cut(s)	111, 210, 359, 810, 816
BshTI	ACCGGT	1 cut(s)	336
BsiEI	CGRYCG	2 cut(s)	341, 439
BsiHKAI	GWGCWC	1 cut(s)	395
BsiSI	CCGG	2 cut(s)	337, 829
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	276, 595
BsmAI	GTCTC	1 cut(s)	713
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	2 cut(s)	59, 137
BsnI	GGCC	5 cut(s)	111, 210, 359, 810, 816
Bso31I	GGTCTC	1 cut(s)	713
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	367, 622
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	4 cut(s)	103, 105, 435, 668
BspANI	GGCC	5 cut(s)	111, 210, 359, 810, 816
BspFNI	CGCG	4 cut(s)	35, 105, 219, 267
BspLI	GGNNCC	2 cut(s)	587, 901
BspPI	GGATC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	858
BspTNI	GGTCTC	1 cut(s)	713
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	3 cut(s)	97, 208, 723
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	4 cut(s)	103, 147, 360, 811
BssMI	GATC	2 cut(s)	367, 622
BssT1I	CCWWGG	3 cut(s)	147, 360, 811
Bst4CI	ACNGT	3 cut(s)	331, 648, 847
Bst6I	CTCTTC	1 cut(s)	858
BstC8I	GCNNGC	1 cut(s)	395
BstDSI	CCRYGG	1 cut(s)	103
BstFNI	CGCG	4 cut(s)	35, 105, 219, 267
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	2 cut(s)	370, 625
BstMAI	GTCTC	1 cut(s)	713
BstMBI	GATC	2 cut(s)	367, 622
BstMCI	CGRYCG	2 cut(s)	341, 439
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 216, 848, 857
BstNSI	RCATGY	1 cut(s)	407
BstPAI	GACNNNNGTC	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	828
BstUI	CGCG	4 cut(s)	35, 105, 219, 267
BstV1I	GCAGC	3 cut(s)	425, 553, 575
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	5 cut(s)	111, 210, 359, 810, 816
BtgI	CCRYGG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	3 cut(s)	201, 404, 730
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	395
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	3 cut(s)	334, 743, 815
Cfr42I	CCGCGG	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	423
CspAI	ACCGGT	1 cut(s)	336
CviAII	CATG	3 cut(s)	244, 404, 590
CviQI	GTAC	1 cut(s)	423
DpnI	GATC	2 cut(s)	369, 624
DpnII	GATC	2 cut(s)	367, 622
DraI	TTTAAA	1 cut(s)	429
DraIII	CACNNNGTG	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Eco130I	CCWWGG	3 cut(s)	147, 360, 811
Eco147I	AGGCCT	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	713
Eco47I	GGWCC	2 cut(s)	334, 743
Eco57I	CTGAAG	1 cut(s)	66
EcoT14I	CCWWGG	3 cut(s)	147, 360, 811
ErhI	CCWWGG	3 cut(s)	147, 360, 811
FaeI	CATG	3 cut(s)	247, 407, 593
FaiI	YATR	6 cut(s)	245, 405, 560, 591, 777, 874
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	3 cut(s)	243, 403, 589
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	3 cut(s)	414, 564, 567
Fsp4HI	GCNGC	3 cut(s)	414, 564, 567
FspBI	CTAG	3 cut(s)	11, 212, 480
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	3 cut(s)	414, 564, 567
GsaI	CCCAGC	2 cut(s)	476, 795
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	5 cut(s)	111, 210, 359, 810, 816
HapII	CCGG	2 cut(s)	337, 829
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	247, 407, 593
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	581
HindII	GTYRAC	1 cut(s)	581
HinfI	GANTC	4 cut(s)	552, 604, 825, 881
HpaII	CCGG	2 cut(s)	337, 829
Hpy166II	GTNNAC	3 cut(s)	334, 581, 728
Hpy188I	TCNGA	5 cut(s)	85, 130, 526, 867, 880
Hpy188III	TCNNGA	5 cut(s)	34, 224, 256, 711, 887
Hpy8I	GTNNAC	3 cut(s)	334, 581, 728
HpyAV	CCTTC	4 cut(s)	150, 308, 708, 743
HpyCH4III	ACNGT	3 cut(s)	331, 648, 847
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	7 cut(s)	4, 413, 465, 547, 644, 674, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 216, 848, 857
HpySE526I	ACGT	1 cut(s)	508
Hsp92II	CATG	3 cut(s)	247, 407, 593
HspAI	GCGC	1 cut(s)	267
KspI	CCGCGG	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	367, 622
LguI	GCTCTTC	1 cut(s)	858
LmnI	GCTCC	2 cut(s)	469, 591
Lsp1109I	GCAGC	3 cut(s)	425, 553, 575
MaeI	CTAG	3 cut(s)	11, 212, 480
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	4 cut(s)	191, 199, 487, 691
MalI	GATC	2 cut(s)	369, 624
MboI	GATC	2 cut(s)	367, 622
MboII	GAAGA	9 cut(s)	60, 63, 66, 72, 115, 135, 374, 377, 845
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	2 cut(s)	618, 779
MlyI	GAGTC	2 cut(s)	561, 819
MmeI	TCCRAC	1 cut(s)	117
MseI	TTAA	3 cut(s)	291, 428, 701
MspA1I	CMGCKG	2 cut(s)	105, 566
MspI	CCGG	2 cut(s)	337, 829
MspR9I	CCNGG	1 cut(s)	830
Mva1269I	GAATGC	2 cut(s)	59, 137
MvnI	CGCG	4 cut(s)	35, 105, 219, 267
MwoI	GCNNNNNNNGC	4 cut(s)	117, 216, 848, 857
NciI	CCSGG	1 cut(s)	830
NdeII	GATC	2 cut(s)	367, 622
NlaIII	CATG	3 cut(s)	247, 407, 593
NlaIV	GGNNCC	2 cut(s)	587, 901
NmuCI	GTSAC	1 cut(s)	199
NruI	TCGCGA	1 cut(s)	35
NspI	RCATGY	1 cut(s)	407
PceI	AGGCCT	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	858
PctI	GAATGC	2 cut(s)	59, 137
PfeI	GAWTC	2 cut(s)	604, 881
PflMI	CCANNNNNTGG	1 cut(s)	595
PinAI	ACCGGT	1 cut(s)	336
PkrI	GCNGC	3 cut(s)	415, 565, 568
PleI	GAGTC	2 cut(s)	560, 819
PpsI	GAGTC	2 cut(s)	560, 819
PshAI	GACNNNNGTC	1 cut(s)	251
Psp1406I	AACGTT	1 cut(s)	508
PspFI	CCCAGC	2 cut(s)	472, 791
PspN4I	GGNNCC	2 cut(s)	587, 901
PspPI	GGNCC	3 cut(s)	334, 743, 815
PsuI	RGATCY	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	566
RruI	TCGCGA	1 cut(s)	35
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
SacII	CCGCGG	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	858
SaqAI	TTAA	3 cut(s)	291, 428, 701
SatI	GCNGC	3 cut(s)	414, 564, 567
Sau3AI	GATC	2 cut(s)	367, 622
Sau96I	GGNCC	3 cut(s)	334, 743, 815
SchI	GAGTC	2 cut(s)	561, 819
ScrFI	CCNGG	1 cut(s)	830
SduI	GDGCHC	1 cut(s)	395
Sfr303I	CCGCGG	1 cut(s)	106
SgrBI	CCGCGG	1 cut(s)	106
SinI	GGWCC	2 cut(s)	334, 743
SmlI	CTYRAG	2 cut(s)	256, 885
SmoI	CTYRAG	2 cut(s)	256, 885
Sse9I	AATT	2 cut(s)	618, 779
SseBI	AGGCCT	1 cut(s)	210
SsiI	CCGC	4 cut(s)	103, 105, 435, 668
SspMI	CTAG	3 cut(s)	11, 212, 480
StuI	AGGCCT	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	828
StyI	CCWWGG	3 cut(s)	147, 360, 811
TaaI	ACNGT	3 cut(s)	331, 648, 847
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	3 cut(s)	55, 439, 823
TasI	AATT	2 cut(s)	618, 779
TfiI	GAWTC	2 cut(s)	604, 881
Tru1I	TTAA	3 cut(s)	291, 428, 701
Tru9I	TTAA	3 cut(s)	291, 428, 701
TscAI	CASTG	3 cut(s)	208, 404, 730
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	3 cut(s)	413, 563, 566
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	3 cut(s)	606, 629, 792
TspGWI	ACGGA	2 cut(s)	482, 776
TspRI	CASTG	3 cut(s)	208, 404, 730
Van91I	CCANNNNNTGG	1 cut(s)	595
VpaK11BI	GGWCC	2 cut(s)	334, 743
XceI	RCATGY	1 cut(s)	407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XspI	CTAG	3 cut(s)	11, 212, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.