Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006785

Physical Location & Seq

Genomic Coordinates Forward (+)

72061756 .. 72063277

Gene Structure 1522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0532400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAACCCAGAAACTGAAGTAGCAAATCCTCATCATCATCACTTGGTTCTAATCCATGGCGTAGGGCATGGAGCTTGGTGCTGGTACAAAATTCGGTGTCTCCTGGAAGCATCAGGCTACAAAGTCACATGCATAGATCTCAAAGGTGCTGGTATTGATCAGTCAGATCCCAACACAATCCTCACTTTCGAAGACTATAACACGCCTCTCATCCACTTCCTGTCCTCCTTGCCTCAGAATGAAAAGGTAATACTTGTTGGACACAGTGCAGGAGGTTTGAGCTTGACAGATGCAATACACAGGTTTGGTAACAAAATAAATATGGCCGTATATGTGGCTGCAAACATGTTAAAGCATGGATTTTCTACAGATCAAGATATCAAGGATGGAGAACCTGACTTATCAGCATTTGGAAACGTAAATGAGTTTACATTTGGGTTGGGACCAGACCAGCCTCCAACTAGCGTCATAATTAAGGAGAGCTTTAGGCACCAAATCATGTATCATATGAGCCCTGTCCAGGACTCGAGTTTAGCTTCGATGCTGCTGCGTCCTGGACCAGTTATGGCGTTGCAAGGCGCTCGATTCGAAGGAAATATTGGTGATGATGCAGATTGTGTGCCAAGAGTGTACATCAAGACCATGAACGATCGTGTTCTAAAGCCAGAGAAACAAGATGCTATGATAAAGAGGTGGCGACCATCCCAAGTCTTTGTTCTTGAAAGCGACCATAGCCCATTTTTCTCCACCCCCTTTCTGCTCTTTGATTTGTTAGTTAAAGCATTGGCTTCCATCAAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

267

Amino Acids

29.73

Weight (kDa)

6.09

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	11 - 116	1.6e-10	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	14 - 125	5.1e-12	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	15 - 251	4.2e-19	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50000 AT1G50000 AT1G50000 AT1G50000 AT1G50000
fragaria_vesca	FvH4_2g03440 FvH4_2g03440 FvH4_2g03440 FvH4_2g03440
malus_domestica	MD10G1109100.v1.1
prunus_persica	Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1
pyrus_communis	pycom10g09440
rosa_chinensis	RchiOBHm_Chr6g0248601
rosa_laevigata	RLG00000015140
rosa_multiflora	Rmu_sc0002553.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213180
rosa_rugosa	Rorug05G0532400 Rorug05G0532400
rosa_samantha	Rh6AG049300 Rh6BG045100 Rh6CG041300 Rh6DG037600
rosa_wichuraiana	Rw6G004260 Rw6G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	489
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	86, 632
AfiI	CCNNNNNNNGG	1 cut(s)	520
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	722
AjnI	CCWGG	3 cut(s)	102, 519, 553
AjuI	GAANNNNNNNTTGG	4 cut(s)	582, 614, 699, 731
AluBI	AGCT	4 cut(s)	74, 282, 483, 536
AluI	AGCT	4 cut(s)	74, 282, 483, 536
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	526
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	3 cut(s)	338, 544, 547
ApoI	RAATTY	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	581
AspS9I	GGNCC	2 cut(s)	443, 557
AsuHPI	GGTGA	1 cut(s)	614
AsuII	TTCGAA	2 cut(s)	189, 588
AvaI	CYCGRG	1 cut(s)	526
AvaII	GGWCC	2 cut(s)	443, 557
BanI	GGYRCC	1 cut(s)	489
BanII	GRGCYC	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	325, 531, 534
BccI	CCATC	3 cut(s)	380, 709, 800
BceAI	ACGGC	1 cut(s)	311
BcgI	CGANNNNNNTGC	4 cut(s)	529, 563, 563, 597
BciT130I	CCWGG	3 cut(s)	104, 521, 555
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	582
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	3 cut(s)	339, 545, 548
BlsI	GCNGC	3 cut(s)	340, 546, 549
Bme1390I	CCNGG	3 cut(s)	104, 521, 555
Bme18I	GGWCC	2 cut(s)	443, 557
BmeT110I	CYCGRG	1 cut(s)	526
BmgT120I	GGNCC	2 cut(s)	443, 557
BmiI	GGNNCC	2 cut(s)	444, 491
BmrFI	CCNGG	3 cut(s)	104, 521, 555
BmsI	GCATC	5 cut(s)	119, 280, 531, 598, 667
BpiI	GAAGAC	1 cut(s)	198
Bpu14I	TTCGAA	2 cut(s)	189, 588
BsaJI	CCNNGG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse1I	ACTGG	1 cut(s)	560
BseBI	CCWGG	3 cut(s)	104, 521, 555
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	3 cut(s)	210, 391, 701
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	560
BseXI	GCAGC	3 cut(s)	325, 531, 534
BsgI	GTGCAG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	652
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	489
BsiEI	CGRYCG	1 cut(s)	652
BsiHKCI	CYCGRG	1 cut(s)	526
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	526
Bsp119I	TTCGAA	2 cut(s)	189, 588
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	5 cut(s)	136, 157, 166, 370, 649
Bsp19I	CCATGG	1 cut(s)	55
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	444, 491
BspPI	GGATC	1 cut(s)	161
BspT104I	TTCGAA	2 cut(s)	189, 588
BspT107I	GGYRCC	1 cut(s)	489
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	1 cut(s)	560
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	5 cut(s)	136, 157, 166, 370, 649
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	3 cut(s)	104, 521, 555
Bst4CI	ACNGT	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	630
BstBI	TTCGAA	2 cut(s)	189, 588
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	3 cut(s)	210, 391, 701
BstH2I	RGCGCY	1 cut(s)	582
BstHHI	GCGC	1 cut(s)	581
BstKTI	GATC	5 cut(s)	139, 160, 169, 373, 652
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	5 cut(s)	136, 157, 166, 370, 649
BstMCI	CGRYCG	1 cut(s)	652
BstMWI	GCNNNNNNNGC	1 cut(s)	732
BstNI	CCWGG	3 cut(s)	104, 521, 555
BstNSI	RCATGY	2 cut(s)	132, 349
BstSCI	CCNGG	3 cut(s)	102, 519, 553
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	325, 531, 534
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	2 cut(s)	136, 166
BstYI	RGATCY	2 cut(s)	136, 166
BsuRI	GGCC	1 cut(s)	326
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	3 cut(s)	210, 391, 701
BtsIMutI	CAGTG	1 cut(s)	271
CaiI	CAGNNNCTG	1 cut(s)	14
CfoI	GCGC	1 cut(s)	581
Cfr13I	GGNCC	2 cut(s)	443, 557
CseI	GACGC	2 cut(s)	454, 539
Csp6I	GTAC	2 cut(s)	85, 631
CviAII	CATG	7 cut(s)	56, 68, 129, 346, 356, 499, 643
CviQI	GTAC	2 cut(s)	85, 631
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	5 cut(s)	138, 159, 168, 372, 651
DpnII	GATC	5 cut(s)	136, 157, 166, 370, 649
EaeI	YGGCCR	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	515
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	443, 557
Eco57I	CTGAAG	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	526
EcoRII	CCWGG	3 cut(s)	102, 519, 553
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	515
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	7 cut(s)	59, 71, 132, 349, 359, 502, 646
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	7 cut(s)	55, 67, 128, 345, 355, 498, 642
FauNDI	CATATG	1 cut(s)	507
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	339, 545, 548
FokI	GGATG	3 cut(s)	197, 398, 688
FriOI	GRGCYC	1 cut(s)	515
Fsp4HI	GCNGC	3 cut(s)	339, 545, 548
FspBI	CTAG	1 cut(s)	462
GlaI	GCGC	1 cut(s)	580
GluI	GCNGC	3 cut(s)	339, 545, 548
HaeII	RGCGCY	1 cut(s)	582
HaeIII	GGCC	1 cut(s)	326
HgaI	GACGC	2 cut(s)	454, 539
HhaI	GCGC	1 cut(s)	581
Hin1II	CATG	7 cut(s)	59, 71, 132, 349, 359, 502, 646
Hin6I	GCGC	1 cut(s)	579
HinP1I	GCGC	1 cut(s)	579
HinfI	GANTC	2 cut(s)	524, 585
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	2 cut(s)	429, 631
Hpy188I	TCNGA	2 cut(s)	166, 237
Hpy188III	TCNNGA	3 cut(s)	374, 637, 719
Hpy8I	GTNNAC	2 cut(s)	429, 631
HpyAV	CCTTC	1 cut(s)	584
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	6 cut(s)	132, 269, 293, 341, 574, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	732
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	7 cut(s)	59, 71, 132, 349, 359, 502, 646
HspAI	GCGC	1 cut(s)	579
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	5 cut(s)	136, 157, 166, 370, 649
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	3 cut(s)	325, 531, 534
LweI	GCATC	5 cut(s)	119, 280, 531, 598, 667
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	2 cut(s)	124, 308
MalI	GATC	5 cut(s)	138, 159, 168, 372, 651
MboI	GATC	5 cut(s)	136, 157, 166, 370, 649
MboII	GAAGA	1 cut(s)	203
MflI	RGATCY	2 cut(s)	136, 166
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	2 cut(s)	90, 471
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	2 cut(s)	238, 482
MnlI	CCTC	8 cut(s)	39, 191, 216, 235, 243, 266, 465, 684
Mph1103I	ATGCAT	1 cut(s)	134
MseI	TTAA	4 cut(s)	350, 474, 777, 802
MspR9I	CCNGG	3 cut(s)	104, 521, 555
MvaI	CCWGG	3 cut(s)	104, 521, 555
MwoI	GCNNNNNNNGC	1 cut(s)	732
NcoI	CCATGG	1 cut(s)	55
NdeI	CATATG	1 cut(s)	507
NdeII	GATC	5 cut(s)	136, 157, 166, 370, 649
NlaIII	CATG	7 cut(s)	59, 71, 132, 349, 359, 502, 646
NlaIV	GGNNCC	2 cut(s)	444, 491
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	134
NspI	RCATGY	2 cut(s)	132, 349
NspV	TTCGAA	2 cut(s)	189, 588
PaeR7I	CTCGAG	1 cut(s)	526
PciI	ACATGT	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	585
PfoI	TCCNGGA	3 cut(s)	102, 519, 553
PkrI	GCNGC	3 cut(s)	340, 546, 549
Ple19I	CGATCG	1 cut(s)	652
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
PscI	ACATGT	1 cut(s)	345
Psp6I	CCWGG	3 cut(s)	102, 519, 553
PspGI	CCWGG	3 cut(s)	102, 519, 553
PspN4I	GGNNCC	2 cut(s)	444, 491
PspPI	GGNCC	2 cut(s)	443, 557
PspXI	VCTCGAGB	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	2 cut(s)	136, 166
PvuI	CGATCG	1 cut(s)	652
RsaI	GTAC	2 cut(s)	86, 632
RsaNI	GTAC	2 cut(s)	85, 631
SaqAI	TTAA	4 cut(s)	350, 474, 777, 802
SatI	GCNGC	3 cut(s)	339, 545, 548
Sau3AI	GATC	5 cut(s)	136, 157, 166, 370, 649
Sau96I	GGNCC	2 cut(s)	443, 557
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	3 cut(s)	104, 521, 555
SduI	GDGCHC	1 cut(s)	515
SfaNI	GCATC	5 cut(s)	119, 280, 531, 598, 667
SfcI	CTRYAG	1 cut(s)	366
Sfr274I	CTCGAG	1 cut(s)	526
SfuI	TTCGAA	2 cut(s)	189, 588
SinI	GGWCC	2 cut(s)	443, 557
SlaI	CTCGAG	1 cut(s)	526
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	2 cut(s)	90, 471
SspI	AATATT	2 cut(s)	598, 800
SspMI	CTAG	1 cut(s)	462
StyD4I	CCNGG	3 cut(s)	102, 519, 553
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	5 cut(s)	189, 527, 539, 583, 588
TasI	AATT	2 cut(s)	90, 471
TatI	WGTACW	1 cut(s)	630
TfiI	GAWTC	1 cut(s)	585
Tru1I	TTAA	4 cut(s)	350, 474, 777, 802
Tru9I	TTAA	4 cut(s)	350, 474, 777, 802
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	338, 544, 547
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	3 cut(s)	17, 255, 659
TspRI	CASTG	1 cut(s)	271
VpaK11BI	GGWCC	2 cut(s)	443, 557
XapI	RAATTY	1 cut(s)	90
XceI	RCATGY	2 cut(s)	132, 349
XhoI	CTCGAG	1 cut(s)	526
XspI	CTAG	1 cut(s)	462
Zsp2I	ATGCAT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.