Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006785

Physical Location & Seq

Genomic Coordinates Reverse (-)

63648232 .. 63656093

Gene Structure 7862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00213180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCTTCTATCTGTTGACCAGTTTCAGAAGATTGTAGATCCTAAAATACTTGAGGAGTTAGGAGGAGATGATGAGCAAGCACTACAGCAGCAGTTGCATGATTTCCTAGCACTGGCATTGTTATGCACTCAAGACGAAAGTGAAGTAAGGCTAGATATGATCGATCTGGCCAAGGAACTTATTACTCCAACCAGTCCCGCGGTGGCCTCCCTCGCTTCTTCTCCGAACGCCTCCCTTCTTCCAAGGCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTACTTCGTCACTGTAAATTTAAGCTCACTGTTTCTTTTTTCAATGGTACTACAGGGAGGCCTAGTCCGTGTTCAAGATGATGAGTTCTGGCACATGACTAAAGTCTTGAGATTACGCGCCAATGATAGGGTAGAGCTGTTTAATGGGAAAGGAGGTTTGGTAGAAGGAGTAATACAAACGGTGGACCGGTCCGGGCTTGCTTTCGTGGCCTTGGAAGATCCAAAGTTGGTTCTTCCACAGAGCACGCAGTGGCATGTGTTTGCAGCTTTTGGTACTTTAAAGGGCGGTCGAGCTGATTGGCTTGTTGAGAAATGCACGGAGCTTGGGGCCAGTAGTGTAACTCCTCTGCTGACAGAACGTTCTCCTACTATCTCGGAAAATAGGCTGGATAGGTTGCAGAGAGTCAATATGGCAGCTGCTAAACAATGTCAACGGCTCCATGAAATGGTATTGAATCCCCCAATGAAAATTGATTGTCTTTTGCCCCTTGTTGCACAGTCCAAGCTATCTTTTTTGGCGGTTGCAGAAGCTACTCCTCTTGTTACTGCATTAACTTCGTCAATAAGGGAGACCAGTGGGCTGATTGTAGTTGGACCAGAAGGCGACTTCACGGAGAAAGAGGTGTCTGAATTGATAAAAGCTGGGTCAATCTCTGTTGGTCTTGGCCCACATCGACTCCGGGTAGAAACTGCTACAGTGGCTCTTCTGGCAACTCTAATGTTATGGTCTGATTCTCAAGAAAAGTGTGGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

346

Amino Acids

37.71

Weight (kDa)

5.03

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA_4	PF20260	120 - 161	6.8e-12	RNA methyltransferase PUA domain
Methyltrans_RNA	PF04452	179 - 334	4.7e-36	RNA methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50000 AT1G50000 AT1G50000 AT1G50000 AT1G50000
fragaria_vesca	FvH4_2g03440 FvH4_2g03440 FvH4_2g03440 FvH4_2g03440
malus_domestica	MD10G1109100.v1.1
prunus_persica	Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1
pyrus_communis	pycom10g09440
rosa_chinensis	RchiOBHm_Chr6g0248601
rosa_laevigata	RLG00000015140
rosa_multiflora	Rmu_sc0002553.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213180
rosa_rugosa	Rorug05G0532400 Rorug05G0532400
rosa_samantha	Rh6AG049300 Rh6BG045100 Rh6CG041300 Rh6DG037600
rosa_wichuraiana	Rw6G004260 Rw6G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	730
AccII	CGCG	2 cut(s)	200, 402
AciI	CCGC	4 cut(s)	198, 200, 570, 803
AclI	AACGTT	1 cut(s)	643
AclWI	GGATC	2 cut(s)	32, 497
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	301
AdeI	CACNNNGTG	1 cut(s)	534
AfaI	GTAC	2 cut(s)	333, 559
AfiI	CCNNNNNNNGG	3 cut(s)	112, 411, 730
AgeI	ACCGGT	1 cut(s)	471
AgsI	TTSAA	3 cut(s)	327, 359, 739
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	9 cut(s)	309, 421, 551, 578, 607, 701, 790, 815, 926
AluI	AGCT	9 cut(s)	309, 421, 551, 578, 607, 701, 790, 815, 926
Alw21I	GWGCWC	1 cut(s)	530
Alw26I	GTCTC	1 cut(s)	848
AlwI	GGATC	2 cut(s)	32, 497
AoxI	GGCC	6 cut(s)	168, 204, 343, 492, 612, 949
ApeKI	GCWGC	4 cut(s)	88, 548, 698, 701
ApoI	RAATTY	1 cut(s)	301
AsiGI	ACCGGT	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	5 cut(s)	469, 474, 612, 878, 950
AsuC2I	CCSGG	2 cut(s)	478, 965
AvaII	GGWCC	3 cut(s)	469, 474, 878
BalI	TGGCCA	1 cut(s)	170
BarI	GAAGNNNNNNTAC	2 cut(s)	441, 473
Bbv12I	GWGCWC	1 cut(s)	530
BbvI	GCAGC	4 cut(s)	100, 560, 688, 710
BceAI	ACGGC	1 cut(s)	734
BcgI	CGANNNNNNTGC	2 cut(s)	822, 856
BcnI	CCSGG	2 cut(s)	478, 965
BcoDI	GTCTC	1 cut(s)	848
BfaI	CTAG	3 cut(s)	107, 152, 347
BfmI	CTRYAG	3 cut(s)	83, 335, 978
BisI	GCNGC	4 cut(s)	89, 549, 699, 702
BlsI	GCNGC	4 cut(s)	90, 550, 700, 703
Bme1390I	CCNGG	2 cut(s)	478, 965
Bme18I	GGWCC	3 cut(s)	469, 474, 878
BmgT120I	GGNCC	5 cut(s)	469, 474, 612, 878, 950
BmiI	GGNNCC	3 cut(s)	613, 722, 1036
BmrFI	CCNGG	2 cut(s)	478, 965
BoxI	GACNNNNGTC	1 cut(s)	386
BpuEI	CTTGAG	4 cut(s)	71, 114, 412, 1005
BpuMI	CCSGG	2 cut(s)	478, 965
Bsa29I	ATCGAT	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	848
BsaJI	CCNNGG	4 cut(s)	171, 198, 242, 495
BsaWI	WCCGGW	1 cut(s)	471
BsaXI	ACNNNNNCTCC	6 cut(s)	333, 363, 429, 459, 945, 975
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 411, 730
Bse118I	RCCGGY	1 cut(s)	471
Bse1I	ACTGG	5 cut(s)	19, 117, 192, 615, 858
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	4 cut(s)	171, 198, 242, 495
BseLI	CCNNNNNNNGG	3 cut(s)	112, 411, 730
BseNI	ACTGG	5 cut(s)	19, 117, 192, 615, 858
BseRI	GAGGAG	4 cut(s)	68, 78, 618, 810
BseXI	GCAGC	4 cut(s)	100, 560, 688, 710
BseYI	CCCAGC	1 cut(s)	926
Bsh1236I	CGCG	2 cut(s)	200, 402
Bsh1285I	CGRYCG	1 cut(s)	574
BshFI	GGCC	6 cut(s)	170, 206, 345, 494, 614, 951
BshTI	ACCGGT	1 cut(s)	471
BshVI	ATCGAT	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	530
BsiSI	CCGG	3 cut(s)	472, 477, 964
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	3 cut(s)	112, 411, 730
BsmAI	GTCTC	1 cut(s)	848
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	6 cut(s)	170, 206, 345, 494, 614, 951
Bso31I	GGTCTC	1 cut(s)	848
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp143I	GATC	4 cut(s)	37, 159, 163, 502
BspACI	CCGC	4 cut(s)	198, 200, 570, 803
BspANI	GGCC	6 cut(s)	170, 206, 345, 494, 614, 951
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	2 cut(s)	200, 402
BspLI	GGNNCC	3 cut(s)	613, 722, 1036
BspPI	GGATC	2 cut(s)	32, 497
BspQI	GCTCTTC	1 cut(s)	993
BspTNI	GGTCTC	1 cut(s)	848
BsrFI	RCCGGY	1 cut(s)	471
BsrI	ACTGG	5 cut(s)	19, 117, 192, 615, 858
BssAI	RCCGGY	1 cut(s)	471
BssECI	CCNNGG	4 cut(s)	171, 198, 242, 495
BssMI	GATC	4 cut(s)	37, 159, 163, 502
BssT1I	CCWWGG	3 cut(s)	171, 242, 495
Bst4CI	ACNGT	5 cut(s)	298, 315, 466, 783, 982
Bst6I	CTCTTC	1 cut(s)	993
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstC8I	GCNNGC	3 cut(s)	78, 483, 530
BstDSI	CCRYGG	1 cut(s)	198
BstFNI	CGCG	2 cut(s)	200, 402
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	4 cut(s)	40, 162, 166, 505
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	4 cut(s)	37, 159, 163, 502
BstMCI	CGRYCG	1 cut(s)	574
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 212, 491, 983, 992
BstNSI	RCATGY	1 cut(s)	542
BstPAI	GACNNNNGTC	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	476, 963
BstSFI	CTRYAG	3 cut(s)	83, 335, 978
BstUI	CGCG	2 cut(s)	200, 402
BstV1I	GCAGC	4 cut(s)	100, 560, 688, 710
BstX2I	RGATCY	2 cut(s)	37, 502
BstYI	RGATCY	2 cut(s)	37, 502
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	6 cut(s)	170, 206, 345, 494, 614, 951
BsuTUI	ATCGAT	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	198
BtsI	GCAGTG	1 cut(s)	539
BtsIMutI	CAGTG	6 cut(s)	110, 294, 311, 539, 865, 987
Cac8I	GCNNGC	3 cut(s)	78, 483, 530
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	471
Cfr13I	GGNCC	5 cut(s)	469, 474, 612, 878, 950
Cfr42I	CCGCGG	1 cut(s)	201
ClaI	ATCGAT	1 cut(s)	162
CpoI	CGGWCCG	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	332, 558
CspAI	ACCGGT	1 cut(s)	471
CspI	CGGWCCG	1 cut(s)	474
CviAII	CATG	4 cut(s)	98, 379, 539, 725
CviQI	GTAC	2 cut(s)	332, 558
DpnI	GATC	4 cut(s)	39, 161, 165, 504
DpnII	GATC	4 cut(s)	37, 159, 163, 502
DraI	TTTAAA	1 cut(s)	564
DraIII	CACNNNGTG	1 cut(s)	534
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	993
EarI	CTCTTC	1 cut(s)	993
Eco130I	CCWWGG	3 cut(s)	171, 242, 495
Eco147I	AGGCCT	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	848
Eco47I	GGWCC	3 cut(s)	469, 474, 878
EcoT14I	CCWWGG	3 cut(s)	171, 242, 495
ErhI	CCWWGG	3 cut(s)	171, 242, 495
FaeI	CATG	4 cut(s)	101, 382, 542, 728
FaiI	YATR	8 cut(s)	99, 124, 158, 380, 540, 695, 726, 1009
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	4 cut(s)	97, 378, 538, 724
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	4 cut(s)	89, 549, 699, 702
Fsp4HI	GCNGC	4 cut(s)	89, 549, 699, 702
FspBI	CTAG	3 cut(s)	107, 152, 347
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	4 cut(s)	89, 549, 699, 702
GsaI	CCCAGC	1 cut(s)	930
HaeIII	GGCC	6 cut(s)	170, 206, 345, 494, 614, 951
HapII	CCGG	3 cut(s)	472, 477, 964
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	4 cut(s)	101, 382, 542, 728
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	2 cut(s)	16, 716
HindII	GTYRAC	2 cut(s)	16, 716
HinfI	GANTC	4 cut(s)	687, 739, 960, 1016
HpaII	CCGG	3 cut(s)	472, 477, 964
Hpy166II	GTNNAC	3 cut(s)	16, 469, 716
Hpy188I	TCNGA	5 cut(s)	27, 225, 661, 913, 1015
Hpy188III	TCNNGA	4 cut(s)	131, 359, 391, 1022
Hpy8I	GTNNAC	3 cut(s)	16, 469, 716
HpyAV	CCTTC	3 cut(s)	245, 443, 878
HpyCH4III	ACNGT	5 cut(s)	298, 315, 466, 783, 982
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	8 cut(s)	97, 126, 548, 600, 682, 779, 809, 833
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 212, 491, 983, 992
HpySE526I	ACGT	1 cut(s)	643
Hsp92II	CATG	4 cut(s)	101, 382, 542, 728
HspAI	GCGC	1 cut(s)	402
KspI	CCGCGG	1 cut(s)	201
Kzo9I	GATC	4 cut(s)	37, 159, 163, 502
LguI	GCTCTTC	1 cut(s)	993
LmnI	GCTCC	2 cut(s)	604, 726
Lsp1109I	GCAGC	4 cut(s)	100, 560, 688, 710
MaeI	CTAG	3 cut(s)	107, 152, 347
MaeII	ACGT	1 cut(s)	643
MaeIII	GTNAC	4 cut(s)	284, 292, 622, 826
MalI	GATC	4 cut(s)	39, 161, 165, 504
MboI	GATC	4 cut(s)	37, 159, 163, 502
MboII	GAAGA	6 cut(s)	40, 210, 230, 509, 512, 980
MflI	RGATCY	2 cut(s)	37, 502
MhlI	GDGCHC	1 cut(s)	530
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	3 cut(s)	301, 753, 914
MluNI	TGGCCA	1 cut(s)	170
MlyI	GAGTC	2 cut(s)	696, 954
MmeI	TCCRAC	2 cut(s)	212, 856
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	4 cut(s)	305, 426, 563, 836
MslI	CAYNNNNRTG	1 cut(s)	121
Msp20I	TGGCCA	1 cut(s)	170
MspA1I	CMGCKG	2 cut(s)	200, 701
MspI	CCGG	3 cut(s)	472, 477, 964
MspR9I	CCNGG	2 cut(s)	478, 965
MvnI	CGCG	2 cut(s)	200, 402
MwoI	GCNNNNNNNGC	5 cut(s)	94, 212, 491, 983, 992
NciI	CCSGG	2 cut(s)	478, 965
NdeII	GATC	4 cut(s)	37, 159, 163, 502
NlaIII	CATG	4 cut(s)	101, 382, 542, 728
NlaIV	GGNNCC	3 cut(s)	613, 722, 1036
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	542
PceI	AGGCCT	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	993
PfeI	GAWTC	2 cut(s)	739, 1016
PflMI	CCANNNNNTGG	1 cut(s)	730
PinAI	ACCGGT	1 cut(s)	471
PkrI	GCNGC	4 cut(s)	90, 550, 700, 703
PleI	GAGTC	2 cut(s)	695, 954
PpsI	GAGTC	2 cut(s)	695, 954
PshAI	GACNNNNGTC	1 cut(s)	386
Psp1406I	AACGTT	1 cut(s)	643
PspFI	CCCAGC	1 cut(s)	926
PspN4I	GGNNCC	3 cut(s)	613, 722, 1036
PspPI	GGNCC	5 cut(s)	469, 474, 612, 878, 950
PsuI	RGATCY	2 cut(s)	37, 502
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	2 cut(s)	333, 559
RsaNI	GTAC	2 cut(s)	332, 558
RseI	CAYNNNNRTG	1 cut(s)	121
Rsr2I	CGGWCCG	1 cut(s)	474
RsrII	CGGWCCG	1 cut(s)	474
SacII	CCGCGG	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	993
SaqAI	TTAA	4 cut(s)	305, 426, 563, 836
SatI	GCNGC	4 cut(s)	89, 549, 699, 702
Sau3AI	GATC	4 cut(s)	37, 159, 163, 502
Sau96I	GGNCC	5 cut(s)	469, 474, 612, 878, 950
SchI	GAGTC	2 cut(s)	696, 954
ScrFI	CCNGG	2 cut(s)	478, 965
SduI	GDGCHC	1 cut(s)	530
SfcI	CTRYAG	3 cut(s)	83, 335, 978
Sfr303I	CCGCGG	1 cut(s)	201
SgrBI	CCGCGG	1 cut(s)	201
SinI	GGWCC	3 cut(s)	469, 474, 878
SmiMI	CAYNNNNRTG	1 cut(s)	121
SmlI	CTYRAG	4 cut(s)	50, 129, 391, 1020
SmoI	CTYRAG	4 cut(s)	50, 129, 391, 1020
Sse9I	AATT	3 cut(s)	301, 753, 914
SseBI	AGGCCT	1 cut(s)	345
SsiI	CCGC	4 cut(s)	198, 200, 570, 803
SspMI	CTAG	3 cut(s)	107, 152, 347
StuI	AGGCCT	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	476, 963
StyI	CCWWGG	3 cut(s)	171, 242, 495
TaaI	ACNGT	5 cut(s)	298, 315, 466, 783, 982
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	3 cut(s)	162, 574, 958
TasI	AATT	3 cut(s)	301, 753, 914
TfiI	GAWTC	2 cut(s)	739, 1016
Tru1I	TTAA	4 cut(s)	305, 426, 563, 836
Tru9I	TTAA	4 cut(s)	305, 426, 563, 836
TscAI	CASTG	6 cut(s)	117, 301, 318, 539, 865, 987
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	4 cut(s)	88, 548, 698, 701
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	2 cut(s)	741, 764
TspGWI	ACGGA	3 cut(s)	341, 617, 911
TspRI	CASTG	6 cut(s)	117, 301, 318, 539, 865, 987
Van91I	CCANNNNNTGG	1 cut(s)	730
VpaK11BI	GGWCC	3 cut(s)	469, 474, 878
XapI	RAATTY	1 cut(s)	301
XceI	RCATGY	1 cut(s)	542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	3 cut(s)	107, 152, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.