Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006785

Physical Location & Seq

Genomic Coordinates Forward (+)

7156397 .. 7159885

Gene Structure 3489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG045100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCAGAGCCTAGCACCAATACGACCTCGTTTCGCGAGGTGCCTCCCAACCTTTCGAGCATTCTCTTCTTCTTCTTCAGATTACTCCAACCAGTCCCGCGGTGGCCTCCCTCGCTTCTTCTCCGAACGCCTCCCTTCTTCCAAGGGAGGCCTAGTTCGTGTTCAAGATGATGAGTTCTGGCACATGACTAAAGTCTTGAGATTACGCGCCAATGATAGGGTAGAGCTGTTTAATGGGAAAGGAGGTTTGGTAGAAGGAGTAATACAAACGGTGGACCGGTCCGGGCTTGATTTCGTGGCCTTGGAAGATCCAAAGTTGGTTCTTCCACAGAGCACGCAGTGGCATGTGTTTGCAGCTTTTGGTACTTTAAAGGGCGGTCGAGCTGATTGGCTTGTGGAGAAATGCACGGAGCTGGGGGCTAGTAGTGTGACTCCTCTGCTGACAGAACGTTCTCCTACTATCTCAGAAAATCGGCTGGATAGGTTGCAGAGAGTCAATATGGCAGCTGCTAAACAATGTCAACGGCTCCATGAAATGGTATTGAATCCCCCAATGAAAATTGATCGTCTTTTGCCCCTTGTGAGTTCTTTCTTCCCATTTTGTTTTACTTTTAAATTGGACAACTATCTTAACTCCAGAAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

215

Amino Acids

24.36

Weight (kDa)

9.69

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA_4	PF20260	55 - 99	1.5e-12	RNA methyltransferase PUA domain
Methyltrans_RNA	PF04452	114 - 195	1.2e-16	RNA methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50000 AT1G50000 AT1G50000 AT1G50000 AT1G50000
fragaria_vesca	FvH4_2g03440 FvH4_2g03440 FvH4_2g03440 FvH4_2g03440
malus_domestica	MD10G1109100.v1.1
prunus_persica	Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1 Prupe.8G149200_v2.0.a1
pyrus_communis	pycom10g09440
rosa_chinensis	RchiOBHm_Chr6g0248601
rosa_laevigata	RLG00000015140
rosa_multiflora	Rmu_sc0002553.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213180
rosa_rugosa	Rorug05G0532400 Rorug05G0532400
rosa_samantha	Rh6AG049300 Rh6BG045100 Rh6CG041300 Rh6DG037600
rosa_wichuraiana	Rw6G004260 Rw6G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	535
AccII	CGCG	3 cut(s)	35, 99, 207
AciI	CCGC	3 cut(s)	97, 99, 375
AclI	AACGTT	1 cut(s)	448
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	640
AcuI	CTGAAG	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	339
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	2 cut(s)	216, 535
AgeI	ACCGGT	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	164, 544
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AloI	GAACNNNNNNTCC	2 cut(s)	138, 170
AluBI	AGCT	5 cut(s)	226, 356, 383, 412, 506
AluI	AGCT	5 cut(s)	226, 356, 383, 412, 506
Alw21I	GWGCWC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	3 cut(s)	103, 148, 297
ApeKI	GCWGC	3 cut(s)	353, 503, 506
ApoI	RAATTY	1 cut(s)	640
AsiGI	ACCGGT	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	2 cut(s)	274, 279
AsuC2I	CCSGG	1 cut(s)	283
AvaII	GGWCC	2 cut(s)	274, 279
BanI	GGYRCC	1 cut(s)	39
BarI	GAAGNNNNNNTAC	2 cut(s)	246, 278
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	3 cut(s)	365, 493, 515
BceAI	ACGGC	1 cut(s)	539
BcnI	CCSGG	1 cut(s)	283
BfaI	CTAG	3 cut(s)	11, 152, 420
BisI	GCNGC	3 cut(s)	354, 504, 507
BlsI	GCNGC	3 cut(s)	355, 505, 508
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	2 cut(s)	274, 279
BmgT120I	GGNCC	2 cut(s)	274, 279
BmiI	GGNNCC	2 cut(s)	41, 527
BmrFI	CCNGG	1 cut(s)	283
BoxI	GACNNNNGTC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	619
BpuEI	CTTGAG	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	283
BsaJI	CCNNGG	3 cut(s)	97, 141, 300
BsaWI	WCCGGW	1 cut(s)	276
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 234, 264
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 535
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	91
BseDI	CCNNGG	3 cut(s)	97, 141, 300
BseLI	CCNNNNNNNGG	2 cut(s)	216, 535
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	423
BseXI	GCAGC	3 cut(s)	365, 493, 515
BseYI	CCCAGC	1 cut(s)	412
Bsh1236I	CGCG	3 cut(s)	35, 99, 207
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	3 cut(s)	105, 150, 299
BshNI	GGYRCC	1 cut(s)	39
BshTI	ACCGGT	1 cut(s)	276
BsiEI	CGRYCG	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	277, 282
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	216, 535
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	3 cut(s)	105, 150, 299
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	2 cut(s)	307, 562
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	3 cut(s)	97, 99, 375
BspANI	GGCC	3 cut(s)	105, 150, 299
BspCNI	CTCAG	1 cut(s)	476
BspFNI	CGCG	3 cut(s)	35, 99, 207
BspLI	GGNNCC	2 cut(s)	41, 527
BspPI	GGATC	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	97, 141, 300
BssMI	GATC	2 cut(s)	307, 562
BssT1I	CCWWGG	2 cut(s)	141, 300
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	1 cut(s)	463
BstDSI	CCRYGG	1 cut(s)	97
BstFNI	CGCG	3 cut(s)	35, 99, 207
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	2 cut(s)	310, 565
BstMBI	GATC	2 cut(s)	307, 562
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	347
BstPAI	GACNNNNGTC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	281
BstUI	CGCG	3 cut(s)	35, 99, 207
BstV1I	GCAGC	3 cut(s)	365, 493, 515
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	105, 150, 299
BtgI	CCRYGG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	344
BtsIMutI	CAGTG	1 cut(s)	344
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	335
CfoI	GCGC	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	274, 279
Cfr42I	CCGCGG	1 cut(s)	100
CpoI	CGGWCCG	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	363
CspAI	ACCGGT	1 cut(s)	276
CspI	CGGWCCG	1 cut(s)	279
CviAII	CATG	3 cut(s)	184, 344, 530
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	1 cut(s)	463
DpnI	GATC	2 cut(s)	309, 564
DpnII	GATC	2 cut(s)	307, 562
DraI	TTTAAA	2 cut(s)	369, 613
DraIII	CACNNNGTG	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	141, 300
Eco147I	AGGCCT	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	274, 279
Eco57I	CTGAAG	1 cut(s)	60
EcoT14I	CCWWGG	2 cut(s)	141, 300
ErhI	CCWWGG	2 cut(s)	141, 300
FaeI	CATG	3 cut(s)	187, 347, 533
FaiI	YATR	4 cut(s)	185, 345, 500, 531
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	3 cut(s)	183, 343, 529
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	3 cut(s)	354, 504, 507
Fsp4HI	GCNGC	3 cut(s)	354, 504, 507
FspBI	CTAG	3 cut(s)	11, 152, 420
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	3 cut(s)	354, 504, 507
GsaI	CCCAGC	1 cut(s)	416
GsuI	CTGGAG	1 cut(s)	619
HaeIII	GGCC	3 cut(s)	105, 150, 299
HapII	CCGG	2 cut(s)	277, 282
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	187, 347, 533
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	1 cut(s)	521
HindII	GTYRAC	1 cut(s)	521
HinfI	GANTC	3 cut(s)	430, 492, 544
HpaII	CCGG	2 cut(s)	277, 282
Hpy166II	GTNNAC	2 cut(s)	274, 521
Hpy188I	TCNGA	3 cut(s)	79, 124, 466
Hpy188III	TCNNGA	4 cut(s)	34, 164, 196, 636
Hpy8I	GTNNAC	2 cut(s)	274, 521
HpyAV	CCTTC	2 cut(s)	144, 248
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	4 cut(s)	4, 353, 405, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	463
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	3 cut(s)	187, 347, 533
HspAI	GCGC	1 cut(s)	207
KspI	CCGCGG	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	307, 562
LmnI	GCTCC	2 cut(s)	409, 531
LpnPI	CCDG	6 cut(s)	104, 163, 290, 295, 398, 461
Lsp1109I	GCAGC	3 cut(s)	365, 493, 515
MaeI	CTAG	3 cut(s)	11, 152, 420
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	2 cut(s)	309, 564
MboI	GATC	2 cut(s)	307, 562
MboII	GAAGA	9 cut(s)	57, 60, 63, 66, 109, 129, 314, 317, 583
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	335
MluCI	AATT	3 cut(s)	558, 614, 640
MlyI	GAGTC	2 cut(s)	424, 501
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	9 cut(s)	30, 36, 53, 116, 120, 140, 140, 236, 444
MseI	TTAA	4 cut(s)	231, 368, 612, 630
MspA1I	CMGCKG	2 cut(s)	99, 506
MspI	CCGG	2 cut(s)	277, 282
MspR9I	CCNGG	1 cut(s)	283
Mva1269I	GAATGC	1 cut(s)	59
MvnI	CGCG	3 cut(s)	35, 99, 207
MwoI	GCNNNNNNNGC	1 cut(s)	111
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	2 cut(s)	307, 562
NlaIII	CATG	3 cut(s)	187, 347, 533
NlaIV	GGNNCC	2 cut(s)	41, 527
NmuCI	GTSAC	1 cut(s)	427
NruI	TCGCGA	1 cut(s)	35
NspI	RCATGY	1 cut(s)	347
PceI	AGGCCT	1 cut(s)	150
PctI	GAATGC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	544
PflMI	CCANNNNNTGG	1 cut(s)	535
PinAI	ACCGGT	1 cut(s)	276
PkrI	GCNGC	3 cut(s)	355, 505, 508
PleI	GAGTC	2 cut(s)	424, 500
PpsI	GAGTC	2 cut(s)	424, 500
PshAI	GACNNNNGTC	1 cut(s)	191
Psp1406I	AACGTT	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	41, 527
PspPI	GGNCC	2 cut(s)	274, 279
PsuI	RGATCY	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	506
RruI	TCGCGA	1 cut(s)	35
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
Rsr2I	CGGWCCG	1 cut(s)	279
RsrII	CGGWCCG	1 cut(s)	279
SacII	CCGCGG	1 cut(s)	100
SaqAI	TTAA	4 cut(s)	231, 368, 612, 630
SatI	GCNGC	3 cut(s)	354, 504, 507
Sau3AI	GATC	2 cut(s)	307, 562
Sau96I	GGNCC	2 cut(s)	274, 279
SchI	GAGTC	2 cut(s)	424, 501
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	335
Sfr303I	CCGCGG	1 cut(s)	100
SgrBI	CCGCGG	1 cut(s)	100
SinI	GGWCC	2 cut(s)	274, 279
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	3 cut(s)	558, 614, 640
SseBI	AGGCCT	1 cut(s)	150
SsiI	CCGC	3 cut(s)	97, 99, 375
SspMI	CTAG	3 cut(s)	11, 152, 420
StuI	AGGCCT	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	2 cut(s)	141, 300
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	2 cut(s)	55, 379
TasI	AATT	3 cut(s)	558, 614, 640
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	4 cut(s)	231, 368, 612, 630
Tru9I	TTAA	4 cut(s)	231, 368, 612, 630
TscAI	CASTG	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	3 cut(s)	353, 503, 506
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	546, 569
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	344
Van91I	CCANNNNNTGG	1 cut(s)	535
VpaK11BI	GGWCC	2 cut(s)	274, 279
XapI	RAATTY	1 cut(s)	640
XceI	RCATGY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XspI	CTAG	3 cut(s)	11, 152, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.