Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008362

Physical Location & Seq

Genomic Coordinates Reverse (-)

18519946 .. 18521781

Gene Structure 1836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTTCTTCTTCTCTGGAGATTGTTAAATTGTGTGGCTCTCCTGTATCGTTTCCCCGCCATAAATCTCCCATAAAATTGGAATGTAGAAAAAGGGTTTTCAGATTACCCAATTCTAGGAGTTGGCATCGTCTTAGGGTTTCTTCATCTGCTCTCAATGGTGGTGATAATCAGTCCAAAGGTGAAGAACCTCCAGAATCTTTATTTATGAAAGAATTGAAGAGACGTGGTATGACTCCTACTTCCTTGCTTCAAGACTATGAAGTGGATCAGGATGAGATCAAAACCGGTAAAGAAACCGGAAACAGCTCTAAAACGACTGCAACTACTCCGGCCTTCGATAAAAGCTTGTTAAATCAGAGAGAGAGATCTTTGGCTTTAAACAGCGAAGGGCTTGAGGGGTTGATTCCGCGTGCTAGGATCTTGCTGACAATTGGAGGGACTTTCTTCTTGGGCTTTTGGCCATTGATAGTCTTAACTCTCGGCGCCTTCTCTGCTCTTTACCTTTACTTTGGAGCAGATTTCATTCATGATGGAAGTAGAACTCCGGTTTCACCACCACCTTACATCGATCCATATGCTCTGTTGGAGGATGAGAGGATATCAGGGATGGATCCTCGTCTAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.27

Weight (kDa)

8.88

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50020
fragaria_vesca	FvH4_2g03130 FvH4_2g03130 FvH4_2g03130 FvH4_2g03130
malus_domestica	MD05G1106900.v1.1 MD10G1111900.v1.1
prunus_persica	Prupe.8G151000_v2.0.a1 Prupe.8G151000_v2.0.a1 Prupe.8G151000_v2.0.a1
pyrus_communis	pycom05g10380 pycom10g09670
rosa_chinensis	RchiOBHm_Chr6g0248001
rosa_laevigata	RLG00000015164
rosa_multiflora	Rmu_sc0010633.1_g000009 Rmu_sc0025757.1_g000004
rosa_roxburghii	Rroxscaffold_7G00213510
rosa_rugosa	Rorug05G0530100
rosa_samantha	Rh6AG045000 Rh6BG040100 Rh6CG038500 Rh6DG035500
rosa_wichuraiana	Rw6G003910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	485
AccII	CGCG	1 cut(s)	412
AciI	CCGC	2 cut(s)	58, 410
AclWI	GGATC	5 cut(s)	276, 428, 566, 608, 621
AcoI	YGGCCR	1 cut(s)	461
AcyI	GRCGYC	1 cut(s)	486
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgeI	ACCGGT	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	220, 254
AjiI	CACGTC	1 cut(s)	227
AluBI	AGCT	2 cut(s)	309, 348
AluI	AGCT	2 cut(s)	309, 348
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	5 cut(s)	276, 428, 566, 608, 621
AoxI	GGCC	2 cut(s)	333, 461
AsiGI	ACCGGT	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	488
AsuHPI	GGTGA	3 cut(s)	176, 194, 546
BalI	TGGCCA	1 cut(s)	463
BamHI	GGATCC	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	485
BccI	CCATC	2 cut(s)	527, 604
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	2 cut(s)	117, 417
BfoI	RGCGCY	1 cut(s)	489
BglII	AGATCT	1 cut(s)	368
BmgBI	CACGTC	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	487, 615
BmsI	GCATC	1 cut(s)	136
BpmI	CTGGAG	2 cut(s)	38, 177
BpuEI	CTTGAG	1 cut(s)	416
Bsa29I	ATCGAT	1 cut(s)	570
BsaHI	GRCGYC	1 cut(s)	486
BsaWI	WCCGGW	3 cut(s)	287, 299, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	287
BseCI	ATCGAT	1 cut(s)	570
BseGI	GGATG	3 cut(s)	280, 598, 615
BseLI	CCNNNNNNNGG	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	412
BshFI	GGCC	2 cut(s)	335, 463
BshNI	GGYRCC	1 cut(s)	485
BshTI	ACCGGT	1 cut(s)	287
BshVI	ATCGAT	1 cut(s)	570
BsiSI	CCGG	4 cut(s)	288, 300, 332, 548
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	217
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	335, 463
Bsp143I	GATC	6 cut(s)	268, 279, 368, 420, 571, 613
BspACI	CCGC	2 cut(s)	58, 410
BspANI	GGCC	2 cut(s)	335, 463
BspDI	ATCGAT	1 cut(s)	570
BspFNI	CGCG	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	2 cut(s)	487, 615
BspPI	GGATC	5 cut(s)	276, 428, 566, 608, 621
BspT107I	GGYRCC	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	287
BssMI	GATC	6 cut(s)	268, 279, 368, 420, 571, 613
BssNI	GRCGYC	1 cut(s)	486
Bst6I	CTCTTC	1 cut(s)	215
BstACI	GRCGYC	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	3 cut(s)	280, 598, 615
BstFNI	CGCG	1 cut(s)	412
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	6 cut(s)	271, 282, 371, 423, 574, 616
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	6 cut(s)	268, 279, 368, 420, 571, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstUI	CGCG	1 cut(s)	412
BstX2I	RGATCY	3 cut(s)	368, 420, 613
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	3 cut(s)	368, 420, 613
Bsu15I	ATCGAT	1 cut(s)	570
BsuRI	GGCC	2 cut(s)	335, 463
BsuTUI	ATCGAT	1 cut(s)	570
BtrI	CACGTC	1 cut(s)	227
BtsCI	GGATG	3 cut(s)	280, 598, 615
Cac8I	GCNNGC	1 cut(s)	414
CciI	TCATGA	1 cut(s)	529
CfoI	GCGC	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	287
ClaI	ATCGAT	1 cut(s)	570
CspAI	ACCGGT	1 cut(s)	287
CviAII	CATG	1 cut(s)	530
CviJI	RGCY	9 cut(s)	5, 39, 309, 335, 348, 377, 394, 456, 463
CviKI_1	RGCY	9 cut(s)	5, 39, 309, 335, 348, 377, 394, 456, 463
DdeI	CTNAG	1 cut(s)	134
DinI	GGCGCC	1 cut(s)	487
DpnI	GATC	6 cut(s)	270, 281, 370, 422, 573, 615
DpnII	GATC	6 cut(s)	268, 279, 368, 420, 571, 613
DraI	TTTAAA	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	461
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco32I	GATATC	1 cut(s)	603
EcoRV	GATATC	1 cut(s)	603
EgeI	GGCGCC	1 cut(s)	487
EheI	GGCGCC	1 cut(s)	487
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	1 cut(s)	533
FaiI	YATR	8 cut(s)	63, 74, 209, 233, 261, 531, 577, 579
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	1 cut(s)	529
FauI	CCCGC	1 cut(s)	65
FauNDI	CATATG	1 cut(s)	577
FokI	GGATG	3 cut(s)	287, 605, 622
FspBI	CTAG	2 cut(s)	117, 417
GlaI	GCGC	1 cut(s)	487
GsuI	CTGGAG	2 cut(s)	38, 177
HaeII	RGCGCY	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	335, 463
HapII	CCGG	4 cut(s)	288, 300, 332, 548
HhaI	GCGC	1 cut(s)	488
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	1 cut(s)	533
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	3 cut(s)	197, 235, 406
HpaII	CCGG	4 cut(s)	288, 300, 332, 548
HphI	GGTGA	3 cut(s)	176, 194, 546
Hpy188I	TCNGA	2 cut(s)	104, 360
Hpy188III	TCNNGA	5 cut(s)	17, 194, 254, 272, 530
HpyAV	CCTTC	3 cut(s)	346, 383, 499
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	226
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	1 cut(s)	533
HspAI	GCGC	1 cut(s)	486
KasI	GGCGCC	1 cut(s)	485
Kzo9I	GATC	6 cut(s)	268, 279, 368, 420, 571, 613
LmnI	GCTCC	1 cut(s)	515
LpnPI	CCDG	9 cut(s)	2, 57, 207, 257, 301, 313, 345, 561, 591
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	117, 417
MaeII	ACGT	1 cut(s)	226
MalI	GATC	6 cut(s)	270, 281, 370, 422, 573, 615
MboI	GATC	6 cut(s)	268, 279, 368, 420, 571, 613
MboII	GAAGA	5 cut(s)	3, 135, 197, 232, 439
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	3 cut(s)	368, 420, 613
MlsI	TGGCCA	1 cut(s)	463
MluCI	AATT	6 cut(s)	29, 77, 112, 215, 432, 625
MluNI	TGGCCA	1 cut(s)	463
Mly113I	GGCGCC	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	567
MnlI	CCTC	6 cut(s)	201, 391, 431, 583, 591, 627
Mox20I	TGGCCA	1 cut(s)	463
MscI	TGGCCA	1 cut(s)	463
MseI	TTAA	4 cut(s)	27, 353, 380, 476
Msp20I	TGGCCA	1 cut(s)	463
MspI	CCGG	4 cut(s)	288, 300, 332, 548
MunI	CAATTG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	1 cut(s)	494
NarI	GGCGCC	1 cut(s)	486
NdeI	CATATG	1 cut(s)	577
NdeII	GATC	6 cut(s)	268, 279, 368, 420, 571, 613
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	2 cut(s)	487, 615
NmeAIII	GCCGAG	1 cut(s)	462
PagI	TCATGA	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	197, 406
PinAI	ACCGGT	1 cut(s)	287
PleI	GAGTC	1 cut(s)	229
PluTI	GGCGCC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	487, 615
PsuI	RGATCY	3 cut(s)	368, 420, 613
SaqAI	TTAA	4 cut(s)	27, 353, 380, 476
Sau3AI	GATC	6 cut(s)	268, 279, 368, 420, 571, 613
SchI	GAGTC	1 cut(s)	229
SetI	ASST	7 cut(s)	184, 193, 229, 311, 350, 507, 565
SfaNI	GCATC	1 cut(s)	136
SfoI	GGCGCC	1 cut(s)	487
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	6 cut(s)	29, 77, 112, 215, 432, 625
SsiI	CCGC	2 cut(s)	58, 410
SspDI	GGCGCC	1 cut(s)	485
SspMI	CTAG	2 cut(s)	117, 417
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	2 cut(s)	339, 570
TasI	AATT	6 cut(s)	29, 77, 112, 215, 432, 625
TfiI	GAWTC	2 cut(s)	197, 406
Tru1I	TTAA	4 cut(s)	27, 353, 380, 476
Tru9I	TTAA	4 cut(s)	27, 353, 380, 476
TspDTI	ATGAA	5 cut(s)	135, 224, 276, 514, 518
XspI	CTAG	2 cut(s)	117, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.