Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008362

Physical Location & Seq

Genomic Coordinates Reverse (-)

63973256 .. 63975682

Gene Structure 2427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00213510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCTTCTCTTCAAATCTTCAAGTCCACCCTCTCTCCCAGCCCTGTTTCCCACTCAAGTTTCACCGGAAAATCCAGGTGGGTCTTGTCGGAAATGCAGTCCAGGAATAACAGTATCATCAGGCTCTCTGGTTATTATTACTTGAGGAGGAGGAGGTTCAGGGTCTCCTGCAAAGCTCAAGAATCAGATAACAAAAGCAATGGCAAGCTCTTCAATTTCGCTATTTGGTTTCGTTTCTGGATGTATGTTTCAGGGGAAGAAACACCGGAGTCATTGTTTATGAAGGAATTGAGGAGGAGGGGTATGAGTCCGACTTCTTTGCTTGAGGAAGCAGAGAGGACTGAGCATGGAATCAATGATGAGAGGGGCAAAGGAGATAGAGGTTTCTCAAATAGAAATGCGGTCTCAACTGAAGTGGAGAAAAGCCTGGCTAATCAAAGGGAGCGATCCATGCAGTTGAACAGTGAAGGCCTTGAGGGGTTGATCCCTCGAGGAAGACTCTTGCTGACTCTTGGAGGGACATTCTTCTTGGCATTTTGGCCATTTATGGTCATAAGTGTAGCACTATTCTCTGCTCTCTATTTCTACTTTGGACCAACATTTATCCATGATGCAAACAACAGAATATCACCACCTCAATACATTGATCCGTATGAACTTCTGGAAGATGATAGGATATCTCAAATAGCCCCTCGTGTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

27.05

Weight (kDa)

9.63

Isoelectric Point (pI)

58.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50020
fragaria_vesca	FvH4_2g03130 FvH4_2g03130 FvH4_2g03130 FvH4_2g03130
malus_domestica	MD05G1106900.v1.1 MD10G1111900.v1.1
prunus_persica	Prupe.8G151000_v2.0.a1 Prupe.8G151000_v2.0.a1 Prupe.8G151000_v2.0.a1
pyrus_communis	pycom05g10380 pycom10g09670
rosa_chinensis	RchiOBHm_Chr6g0248001
rosa_laevigata	RLG00000015164
rosa_multiflora	Rmu_sc0010633.1_g000009 Rmu_sc0025757.1_g000004
rosa_roxburghii	Rroxscaffold_7G00213510
rosa_rugosa	Rorug05G0530100
rosa_samantha	Rh6AG045000 Rh6BG040100 Rh6CG038500 Rh6DG035500
rosa_wichuraiana	Rw6G003910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	489
AciI	CCGC	1 cut(s)	401
AclWI	GGATC	3 cut(s)	441, 478, 641
AcoI	YGGCCR	1 cut(s)	539
AcuI	CTGAAG	1 cut(s)	432
AgsI	TTSAA	4 cut(s)	14, 22, 214, 460
AjnI	CCWGG	3 cut(s)	74, 101, 426
AluBI	AGCT	2 cut(s)	176, 208
AluI	AGCT	2 cut(s)	176, 208
Alw26I	GTCTC	2 cut(s)	169, 409
AlwI	GGATC	3 cut(s)	441, 478, 641
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	2 cut(s)	469, 539
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	55, 621
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	593
BalI	TGGCCA	1 cut(s)	541
BauI	CACGAG	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	502
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BciT130I	CCWGG	3 cut(s)	76, 103, 428
BcoDI	GTCTC	2 cut(s)	169, 409
Bme1390I	CCNGG	3 cut(s)	76, 103, 428
Bme18I	GGWCC	1 cut(s)	593
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	593
BmrFI	CCNGG	3 cut(s)	76, 103, 428
BmsI	GCATC	1 cut(s)	601
BpiI	GAAGAC	1 cut(s)	502
BplI	GAGNNNNNCTC	2 cut(s)	483, 515
BpuEI	CTTGAG	5 cut(s)	40, 162, 163, 344, 494
BsaI	GGTCTC	2 cut(s)	169, 409
BsaWI	WCCGGW	2 cut(s)	65, 265
BsaXI	ACNNNNNCTCC	6 cut(s)	19, 49, 260, 286, 290, 316
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	3 cut(s)	76, 103, 428
BseGI	GGATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	5 cut(s)	160, 163, 166, 307, 310
BseYI	CCCAGC	1 cut(s)	38
BshFI	GGCC	2 cut(s)	471, 541
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	2 cut(s)	66, 266
BslFI	GGGAC	1 cut(s)	532
BsmAI	GTCTC	2 cut(s)	169, 409
BsmFI	GGGAC	1 cut(s)	532
BsnI	GGCC	2 cut(s)	471, 541
Bso31I	GGTCTC	2 cut(s)	169, 409
BsoBI	CYCGRG	1 cut(s)	489
Bsp143I	GATC	3 cut(s)	446, 483, 646
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	2 cut(s)	471, 541
BspCNI	CTCAG	1 cut(s)	334
BspPI	GGATC	3 cut(s)	441, 478, 641
BspQI	GCTCTTC	1 cut(s)	215
BspTNI	GGTCTC	2 cut(s)	169, 409
BsrDI	GCAATG	1 cut(s)	205
BssMI	GATC	3 cut(s)	446, 483, 646
BssSI	CACGAG	1 cut(s)	693
Bst2BI	CACGAG	1 cut(s)	693
Bst2UI	CCWGG	3 cut(s)	76, 103, 428
Bst4CI	ACNGT	2 cut(s)	113, 464
Bst6I	CTCTTC	2 cut(s)	15, 215
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	3 cut(s)	449, 486, 649
BstMAI	GTCTC	2 cut(s)	169, 409
BstMBI	GATC	3 cut(s)	446, 483, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	451
BstNI	CCWGG	3 cut(s)	76, 103, 428
BstSCI	CCNGG	3 cut(s)	74, 101, 426
BstV2I	GAAGAC	1 cut(s)	502
BsuRI	GGCC	2 cut(s)	471, 541
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	593
CspCI	CAANNNNNGTGG	2 cut(s)	396, 431
CviAII	CATG	3 cut(s)	347, 451, 608
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	3 cut(s)	448, 485, 648
DpnII	GATC	3 cut(s)	446, 483, 646
EaeI	YGGCCR	1 cut(s)	539
Eam1104I	CTCTTC	2 cut(s)	15, 215
EarI	CTCTTC	2 cut(s)	15, 215
Eco147I	AGGCCT	1 cut(s)	471
Eco31I	GGTCTC	2 cut(s)	169, 409
Eco32I	GATATC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	489
EcoRII	CCWGG	3 cut(s)	74, 101, 426
EcoRV	GATATC	1 cut(s)	678
FaeI	CATG	3 cut(s)	350, 454, 611
FaiI	YATR	9 cut(s)	246, 281, 305, 348, 452, 548, 554, 609, 654
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	3 cut(s)	346, 450, 607
FokI	GGATG	1 cut(s)	253
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	471, 541
HapII	CCGG	2 cut(s)	66, 266
Hin1II	CATG	3 cut(s)	350, 454, 611
HinfI	GANTC	6 cut(s)	182, 269, 307, 351, 498, 508
HpaII	CCGG	2 cut(s)	66, 266
HphI	GGTGA	2 cut(s)	55, 621
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	3 cut(s)	91, 187, 312
Hpy188III	TCNNGA	3 cut(s)	179, 238, 662
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	2 cut(s)	277, 461
HpyCH4III	ACNGT	2 cut(s)	113, 464
HpyCH4V	TGCA	4 cut(s)	97, 171, 454, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	451
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	3 cut(s)	350, 454, 611
Kzo9I	GATC	3 cut(s)	446, 483, 646
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	442
LweI	GCATC	1 cut(s)	601
MalI	GATC	3 cut(s)	448, 485, 648
MboI	GATC	3 cut(s)	446, 483, 646
MboII	GAAGA	6 cut(s)	10, 202, 269, 507, 517, 677
MlsI	TGGCCA	1 cut(s)	541
MluCI	AATT	2 cut(s)	214, 287
MluNI	TGGCCA	1 cut(s)	541
MlyI	GAGTC	4 cut(s)	278, 316, 492, 502
MmeI	TCCRAC	2 cut(s)	69, 335
Mox20I	TGGCCA	1 cut(s)	541
MscI	TGGCCA	1 cut(s)	541
Msp20I	TGGCCA	1 cut(s)	541
MspI	CCGG	2 cut(s)	66, 266
MspR9I	CCNGG	3 cut(s)	76, 103, 428
MvaI	CCWGG	3 cut(s)	76, 103, 428
MwoI	GCNNNNNNNGC	1 cut(s)	451
NdeII	GATC	3 cut(s)	446, 483, 646
NlaIII	CATG	3 cut(s)	350, 454, 611
PaeR7I	CTCGAG	1 cut(s)	489
PceI	AGGCCT	1 cut(s)	471
PciSI	GCTCTTC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	182, 351
PfoI	TCCNGGA	1 cut(s)	101
PleI	GAGTC	4 cut(s)	277, 315, 492, 502
PpsI	GAGTC	4 cut(s)	277, 315, 492, 502
Psp6I	CCWGG	3 cut(s)	74, 101, 426
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	3 cut(s)	74, 101, 426
PspPI	GGNCC	1 cut(s)	593
PspXI	VCTCGAGB	1 cut(s)	489
SapI	GCTCTTC	1 cut(s)	215
Sau3AI	GATC	3 cut(s)	446, 483, 646
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	4 cut(s)	278, 316, 492, 502
ScrFI	CCNGG	3 cut(s)	76, 103, 428
SetI	ASST	6 cut(s)	80, 158, 178, 210, 385, 637
SfaNI	GCATC	1 cut(s)	601
Sfr274I	CTCGAG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	593
SlaI	CTCGAG	1 cut(s)	489
SmlI	CTYRAG	6 cut(s)	55, 142, 177, 323, 473, 489
SmoI	CTYRAG	6 cut(s)	55, 142, 177, 323, 473, 489
Sse9I	AATT	2 cut(s)	214, 287
SseBI	AGGCCT	1 cut(s)	471
SsiI	CCGC	1 cut(s)	401
StuI	AGGCCT	1 cut(s)	471
StyD4I	CCNGG	3 cut(s)	74, 101, 426
TaaI	ACNGT	2 cut(s)	113, 464
TaqI	TCGA	1 cut(s)	490
TasI	AATT	2 cut(s)	214, 287
TfiI	GAWTC	2 cut(s)	182, 351
TscAI	CASTG	1 cut(s)	469
TspDTI	ATGAA	2 cut(s)	296, 669
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	593
XhoI	CTCGAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.