Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008362

Physical Location & Seq

Genomic Coordinates Forward (+)

3639679 .. 3645961

Gene Structure 6283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG035500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTTCTCTTCAAATCTTCAAGTCCACCCTCTCTCCCAGCCCTGTTTCCCACTCAAGTTTCACCGGAAAATCCAGGTGGGTCTTGTCGGAAATTCAGTCCAGGAATAACGGTATCATCAGGTTCTCTGGTTATTACTTGAGAAGGAGGTTAAGGGTCTGCTGCAAAGCTCAAGAATCAGACAACAAAAGCAATGGGGAAGAACCACCCGAGTCATTGTTTATGAAGGAATTGAGGAGGAGGGGTATGAGTCCGACTTCTTTGCTTGAGGAAGCAGAGAGGACTGAGCATGGAATCAATGATGAGAGGGGCAAAGGAGATAGAGGTTTCTCAAATAGAAATGCGGTCTCAACTGAAGTGGAGAAAAGCTTGGCTAATCAAAGGGAGCGATCCATGCAGTTGAACAGTGAAGGCCTCGAGGGGTTGATCCCTCGAGGAAGACTCTTGCTGACGCTTGGAGGGACATTCTTCTTGGCATTTTGGCCATTTATTGTCATAAGTCTAGCACTATTCTCTGCTCTCTATTTTGTAAGCTCTCTTAAATGTTCTTCAATTTGGAAATTTGTTTTGTTTTGTTTGCTCTTAAACGCATCACTGTATAGCAATGTCTTCTTGTTCTGTTTCCTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.85

Weight (kDa)

9.5

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50020
fragaria_vesca	FvH4_2g03130 FvH4_2g03130 FvH4_2g03130 FvH4_2g03130
malus_domestica	MD05G1106900.v1.1 MD10G1111900.v1.1
prunus_persica	Prupe.8G151000_v2.0.a1 Prupe.8G151000_v2.0.a1 Prupe.8G151000_v2.0.a1
pyrus_communis	pycom05g10380 pycom10g09670
rosa_chinensis	RchiOBHm_Chr6g0248001
rosa_laevigata	RLG00000015164
rosa_multiflora	Rmu_sc0010633.1_g000009 Rmu_sc0025757.1_g000004
rosa_roxburghii	Rroxscaffold_7G00213510
rosa_rugosa	Rorug05G0530100
rosa_samantha	Rh6AG045000 Rh6BG040100 Rh6CG038500 Rh6DG035500
rosa_wichuraiana	Rw6G003910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	2 cut(s)	416, 432
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	2 cut(s)	384, 421
AcoI	YGGCCR	1 cut(s)	482
AcsI	RAATTY	2 cut(s)	93, 560
AcuI	CTGAAG	1 cut(s)	375
AgsI	TTSAA	4 cut(s)	14, 22, 403, 552
AjnI	CCWGG	2 cut(s)	74, 101
AluBI	AGCT	3 cut(s)	170, 369, 534
AluI	AGCT	3 cut(s)	170, 369, 534
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	2 cut(s)	384, 421
Ama87I	CYCGRG	3 cut(s)	209, 416, 432
AoxI	GGCC	2 cut(s)	412, 482
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	2 cut(s)	93, 560
AsuHPI	GGTGA	1 cut(s)	55
AvaI	CYCGRG	3 cut(s)	209, 416, 432
BalI	TGGCCA	1 cut(s)	484
BbsI	GAAGAC	2 cut(s)	445, 601
BbvI	GCAGC	1 cut(s)	149
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BciT130I	CCWGG	2 cut(s)	76, 103
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	1 cut(s)	503
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme1390I	CCNGG	2 cut(s)	76, 103
BmeT110I	CYCGRG	3 cut(s)	209, 416, 432
BmrFI	CCNGG	2 cut(s)	76, 103
BmsI	GCATC	1 cut(s)	599
BpiI	GAAGAC	2 cut(s)	445, 601
BplI	GAGNNNNNCTC	2 cut(s)	426, 458
BpuEI	CTTGAG	4 cut(s)	40, 156, 160, 287
BsaI	GGTCTC	1 cut(s)	352
BsaWI	WCCGGW	1 cut(s)	65
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 229, 259
Bse3DI	GCAATG	2 cut(s)	199, 610
BseBI	CCWGG	2 cut(s)	76, 103
BseMI	GCAATG	2 cut(s)	199, 610
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	2 cut(s)	250, 253
BseXI	GCAGC	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	38
BshFI	GGCC	2 cut(s)	414, 484
BsiHKCI	CYCGRG	3 cut(s)	209, 416, 432
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	2 cut(s)	414, 484
Bso31I	GGTCTC	1 cut(s)	352
BsoBI	CYCGRG	3 cut(s)	209, 416, 432
Bsp143I	GATC	2 cut(s)	389, 426
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	2 cut(s)	414, 484
BspCNI	CTCAG	1 cut(s)	277
BspPI	GGATC	2 cut(s)	384, 421
BspTNI	GGTCTC	1 cut(s)	352
BsrDI	GCAATG	2 cut(s)	199, 610
BssMI	GATC	2 cut(s)	389, 426
Bst2UI	CCWGG	2 cut(s)	76, 103
Bst4CI	ACNGT	3 cut(s)	113, 407, 597
Bst6I	CTCTTC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	285
BstKTI	GATC	2 cut(s)	392, 429
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	2 cut(s)	389, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNI	CCWGG	2 cut(s)	76, 103
BstSCI	CCNGG	2 cut(s)	74, 101
BstV1I	GCAGC	1 cut(s)	149
BstV2I	GAAGAC	2 cut(s)	445, 601
BsuRI	GGCC	2 cut(s)	414, 484
BtsIMutI	CAGTG	2 cut(s)	412, 593
CseI	GACGC	1 cut(s)	460
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CviAII	CATG	2 cut(s)	290, 394
CviJI	RGCY	8 cut(s)	5, 42, 170, 369, 374, 414, 484, 534
CviKI_1	RGCY	8 cut(s)	5, 42, 170, 369, 374, 414, 484, 534
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	2 cut(s)	391, 428
DpnII	GATC	2 cut(s)	389, 426
EaeI	YGGCCR	1 cut(s)	482
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco147I	AGGCCT	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	375
Eco88I	CYCGRG	3 cut(s)	209, 416, 432
EcoRII	CCWGG	2 cut(s)	74, 101
FaeI	CATG	2 cut(s)	293, 397
FaiI	YATR	6 cut(s)	224, 248, 291, 395, 497, 600
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	2 cut(s)	289, 393
Fnu4HI	GCNGC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	1 cut(s)	163
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	414, 484
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	460
Hin1II	CATG	2 cut(s)	293, 397
HindIII	AAGCTT	1 cut(s)	367
HinfI	GANTC	5 cut(s)	176, 212, 250, 294, 441
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	3 cut(s)	91, 181, 255
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	3 cut(s)	138, 220, 404
HpyCH4III	ACNGT	3 cut(s)	113, 407, 597
HpyCH4V	TGCA	2 cut(s)	165, 397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	293, 397
Kzo9I	GATC	2 cut(s)	389, 426
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	9 cut(s)	52, 57, 61, 79, 88, 88, 106, 114, 115
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	599
MaeI	CTAG	1 cut(s)	503
MalI	GATC	2 cut(s)	391, 428
MboI	GATC	2 cut(s)	389, 426
MboII	GAAGA	6 cut(s)	10, 212, 450, 460, 540, 601
MlsI	TGGCCA	1 cut(s)	484
MluCI	AATT	4 cut(s)	93, 230, 552, 560
MluNI	TGGCCA	1 cut(s)	484
MlyI	GAGTC	3 cut(s)	221, 259, 435
MmeI	TCCRAC	2 cut(s)	69, 278
Mox20I	TGGCCA	1 cut(s)	484
MscI	TGGCCA	1 cut(s)	484
MseI	TTAA	3 cut(s)	152, 540, 584
Msp20I	TGGCCA	1 cut(s)	484
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	76, 103
MvaI	CCWGG	2 cut(s)	76, 103
MwoI	GCNNNNNNNGC	1 cut(s)	394
NdeII	GATC	2 cut(s)	389, 426
NlaIII	CATG	2 cut(s)	293, 397
PaeR7I	CTCGAG	2 cut(s)	416, 432
PceI	AGGCCT	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	176, 294
PfoI	TCCNGGA	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	3 cut(s)	220, 258, 435
PpsI	GAGTC	3 cut(s)	220, 258, 435
Psp6I	CCWGG	2 cut(s)	74, 101
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	2 cut(s)	74, 101
PspXI	VCTCGAGB	2 cut(s)	416, 432
SaqAI	TTAA	3 cut(s)	152, 540, 584
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	2 cut(s)	389, 426
SchI	GAGTC	3 cut(s)	221, 259, 435
ScrFI	CCNGG	2 cut(s)	76, 103
SetI	ASST	7 cut(s)	80, 125, 152, 172, 328, 371, 536
SfaNI	GCATC	1 cut(s)	599
Sfr274I	CTCGAG	2 cut(s)	416, 432
SlaI	CTCGAG	2 cut(s)	416, 432
SmlI	CTYRAG	6 cut(s)	55, 139, 171, 266, 416, 432
SmoI	CTYRAG	6 cut(s)	55, 139, 171, 266, 416, 432
Sse9I	AATT	4 cut(s)	93, 230, 552, 560
SseBI	AGGCCT	1 cut(s)	414
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	1 cut(s)	503
StuI	AGGCCT	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	74, 101
TaaI	ACNGT	3 cut(s)	113, 407, 597
TaqI	TCGA	2 cut(s)	417, 433
TasI	AATT	4 cut(s)	93, 230, 552, 560
TfiI	GAWTC	2 cut(s)	176, 294
Tru1I	TTAA	3 cut(s)	152, 540, 584
Tru9I	TTAA	3 cut(s)	152, 540, 584
TscAI	CASTG	2 cut(s)	412, 600
TseI	GCWGC	1 cut(s)	162
TspDTI	ATGAA	2 cut(s)	239, 617
TspRI	CASTG	2 cut(s)	412, 600
XapI	RAATTY	2 cut(s)	93, 560
XhoI	CTCGAG	2 cut(s)	416, 432
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.