Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008362

Physical Location & Seq

Genomic Coordinates Forward (+)

3720039 .. 3724419

Gene Structure 4381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG038500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTTCTCTTCAAATCTTCAAGTCCACCCTCTCTCCCAGCCCTGTTTCCCACTCAAGTTTCACCGGAAAATCCAGGTGGGTCTTGTCGGAAATTCAGTCCAGGAATAACGGTATCATCAGGTTCTCTGGTTATTACTTGAGAAGGAGGTTAAGGGTCTGCTGCAAAGCTCAAGAATCAGACAACAAAAGCAATGGGGAAGAACCACCCGAGTCATTGTTTATGAAGGAATTGAGGAGGAGGGGTATGAGTCCGACTTCTTTGCTTGAGGAAGCAGAGAGGACTGAGCATGGAATCAATGATGAGAGGGGCAAAGGAGATAGAGGTTTCTCAAATAGAAATGCGGTCTCAACTGAAGTGGAGAAAAGCTTGGCTAATCAAAGGGAGCGATCCATGCAGTTGAACAGTGAAGGCCTCGAGGTTGAAATGCTTTTGTTTCTTTATTGGTTAACTAGTTGCAATTCGCTCAATATCAATATACATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.55

Weight (kDa)

9.12

Isoelectric Point (pI)

75.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50020
fragaria_vesca	FvH4_2g03130 FvH4_2g03130 FvH4_2g03130 FvH4_2g03130
malus_domestica	MD05G1106900.v1.1 MD10G1111900.v1.1
prunus_persica	Prupe.8G151000_v2.0.a1 Prupe.8G151000_v2.0.a1 Prupe.8G151000_v2.0.a1
pyrus_communis	pycom05g10380 pycom10g09670
rosa_chinensis	RchiOBHm_Chr6g0248001
rosa_laevigata	RLG00000015164
rosa_multiflora	Rmu_sc0010633.1_g000009 Rmu_sc0025757.1_g000004
rosa_roxburghii	Rroxscaffold_7G00213510
rosa_rugosa	Rorug05G0530100
rosa_samantha	Rh6AG045000 Rh6BG040100 Rh6CG038500 Rh6DG035500
rosa_wichuraiana	Rw6G003910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	416
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	375
AgsI	TTSAA	4 cut(s)	14, 22, 403, 425
AhlI	ACTAGT	1 cut(s)	452
AjnI	CCWGG	2 cut(s)	74, 101
AluBI	AGCT	2 cut(s)	170, 369
AluI	AGCT	2 cut(s)	170, 369
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	1 cut(s)	384
Ama87I	CYCGRG	2 cut(s)	209, 416
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	55
AvaI	CYCGRG	2 cut(s)	209, 416
BbvI	GCAGC	1 cut(s)	149
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BciT130I	CCWGG	2 cut(s)	76, 103
BcoDI	GTCTC	1 cut(s)	352
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	1 cut(s)	453
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme1390I	CCNGG	2 cut(s)	76, 103
BmeT110I	CYCGRG	2 cut(s)	209, 416
BmrFI	CCNGG	2 cut(s)	76, 103
BpuEI	CTTGAG	4 cut(s)	40, 156, 160, 287
BsaI	GGTCTC	1 cut(s)	352
BsaWI	WCCGGW	1 cut(s)	65
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 229, 259
Bse3DI	GCAATG	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	76, 103
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	2 cut(s)	250, 253
BseXI	GCAGC	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	38
BshFI	GGCC	1 cut(s)	414
BsiHKCI	CYCGRG	2 cut(s)	209, 416
BsiSI	CCGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	414
Bso31I	GGTCTC	1 cut(s)	352
BsoBI	CYCGRG	2 cut(s)	209, 416
Bsp143I	GATC	1 cut(s)	389
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	199
BssMI	GATC	1 cut(s)	389
Bst2UI	CCWGG	2 cut(s)	76, 103
Bst4CI	ACNGT	2 cut(s)	113, 407
Bst6I	CTCTTC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	285
BstKTI	GATC	1 cut(s)	392
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	389
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNI	CCWGG	2 cut(s)	76, 103
BstSCI	CCNGG	2 cut(s)	74, 101
BstV1I	GCAGC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	412
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CviAII	CATG	2 cut(s)	290, 394
CviJI	RGCY	6 cut(s)	5, 42, 170, 369, 374, 414
CviKI_1	RGCY	6 cut(s)	5, 42, 170, 369, 374, 414
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	391
DpnII	GATC	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco147I	AGGCCT	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	375
Eco88I	CYCGRG	2 cut(s)	209, 416
EcoRII	CCWGG	2 cut(s)	74, 101
FaeI	CATG	2 cut(s)	293, 397
FaiI	YATR	6 cut(s)	224, 248, 291, 395, 479, 483
FatI	CATG	2 cut(s)	289, 393
Fnu4HI	GCNGC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	1 cut(s)	163
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	1 cut(s)	66
Hin1II	CATG	2 cut(s)	293, 397
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	367
HinfI	GANTC	4 cut(s)	176, 212, 250, 294
HpaI	GTTAAC	1 cut(s)	450
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	2 cut(s)	27, 450
Hpy188I	TCNGA	3 cut(s)	91, 181, 255
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	27, 450
HpyAV	CCTTC	3 cut(s)	138, 220, 404
HpyCH4III	ACNGT	2 cut(s)	113, 407
HpyCH4V	TGCA	3 cut(s)	165, 397, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	293, 397
KspAI	GTTAAC	1 cut(s)	450
Kzo9I	GATC	1 cut(s)	389
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	9 cut(s)	52, 57, 61, 79, 88, 88, 106, 114, 115
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	453
MalI	GATC	1 cut(s)	391
MboI	GATC	1 cut(s)	389
MboII	GAAGA	2 cut(s)	10, 212
MluCI	AATT	3 cut(s)	93, 230, 460
MlyI	GAGTC	2 cut(s)	221, 259
MmeI	TCCRAC	2 cut(s)	69, 278
MseI	TTAA	2 cut(s)	152, 449
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	76, 103
MvaI	CCWGG	2 cut(s)	76, 103
MwoI	GCNNNNNNNGC	1 cut(s)	394
NdeII	GATC	1 cut(s)	389
NlaIII	CATG	2 cut(s)	293, 397
PaeR7I	CTCGAG	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	176, 294
PfoI	TCCNGGA	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	2 cut(s)	220, 258
PpsI	GAGTC	2 cut(s)	220, 258
Psp6I	CCWGG	2 cut(s)	74, 101
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	2 cut(s)	74, 101
PspXI	VCTCGAGB	1 cut(s)	416
SaqAI	TTAA	2 cut(s)	152, 449
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	1 cut(s)	389
SchI	GAGTC	2 cut(s)	221, 259
ScrFI	CCNGG	2 cut(s)	76, 103
SetI	ASST	7 cut(s)	80, 125, 152, 172, 328, 371, 423
Sfr274I	CTCGAG	1 cut(s)	416
SlaI	CTCGAG	1 cut(s)	416
SmlI	CTYRAG	5 cut(s)	55, 139, 171, 266, 416
SmoI	CTYRAG	5 cut(s)	55, 139, 171, 266, 416
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	3 cut(s)	93, 230, 460
SseBI	AGGCCT	1 cut(s)	414
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	74, 101
TaaI	ACNGT	2 cut(s)	113, 407
TaqI	TCGA	1 cut(s)	417
TasI	AATT	3 cut(s)	93, 230, 460
TfiI	GAWTC	2 cut(s)	176, 294
Tru1I	TTAA	2 cut(s)	152, 449
Tru9I	TTAA	2 cut(s)	152, 449
TscAI	CASTG	1 cut(s)	412
TseI	GCWGC	1 cut(s)	162
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	412
XapI	RAATTY	1 cut(s)	93
XhoI	CTCGAG	1 cut(s)	416
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.