Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008362

Physical Location & Seq

Genomic Coordinates Reverse (-)

62513412 .. 62515678

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015164

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCTTCTCTTCAAGTCTTCAAGTCCACCCTCTCTCCCAGCCCTGTTTCCCACTCAAGTTTCACCGGAAAATCCAGGTGGGTCTTGTCGGAAATTCAGTCCAGGAATAACAGTATCATCAGGCTCTCTGGTTATTATTACTTGAGGAGGAGGAGGTTCAGGGTCTGCTGCAAAGCTCAAGAATCAGATAACAAAAGCAATGGGGAAGAACCACCCGAGTCATTGTTTATGAAGGAATTGAGGAGGAGGGGTATGAGTCCGACTTCTTTGCTTGAGGAAGCAGAGAGGACTGAGCATGGAATCAATGATGAGAGGGGCAAAGGAGATAGAGGTTTCTCAAATAGAAATGCGGTCTCAACTGAAGTGGAGAAAAGCCTGGCTAATCAAAGGGAGCGATCCATGCAGTTGAACAGTGAAGGCCTTGAGGGGTTGATCCCTCGGGGAAGACTCTTGCTGACACTTGGAGGGACATTCTTCTTGGCATTTTGGCCATTTATGGTCATTAGTGTAGCACTATTCTCTGCTCTCTATTTTTACTTTGGACCAACATTTATCCATGATGCAAACAACAGAATATCACCACCTCAATACATTGATCCATATGAACTTCTGGAAGATGATAGGATTTCTCAAATAGCCCCTCGTGTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.84

Weight (kDa)

9.32

Isoelectric Point (pI)

62.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50020
fragaria_vesca	FvH4_2g03130 FvH4_2g03130 FvH4_2g03130 FvH4_2g03130
malus_domestica	MD05G1106900.v1.1 MD10G1111900.v1.1
prunus_persica	Prupe.8G151000_v2.0.a1 Prupe.8G151000_v2.0.a1 Prupe.8G151000_v2.0.a1
pyrus_communis	pycom05g10380 pycom10g09670
rosa_chinensis	RchiOBHm_Chr6g0248001
rosa_laevigata	RLG00000015164
rosa_multiflora	Rmu_sc0010633.1_g000009 Rmu_sc0025757.1_g000004
rosa_roxburghii	Rroxscaffold_7G00213510
rosa_rugosa	Rorug05G0530100
rosa_samantha	Rh6AG045000 Rh6BG040100 Rh6CG038500 Rh6DG035500
rosa_wichuraiana	Rw6G003910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	3 cut(s)	390, 427, 590
AcoI	YGGCCR	1 cut(s)	488
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	14, 22, 409
AjnI	CCWGG	3 cut(s)	74, 101, 375
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	3 cut(s)	390, 427, 590
AlwNI	CAGNNNCTG	1 cut(s)	165
Ama87I	CYCGRG	2 cut(s)	215, 438
AoxI	GGCC	2 cut(s)	418, 488
ApeKI	GCWGC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	55, 570
AvaI	CYCGRG	2 cut(s)	215, 438
AvaII	GGWCC	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	490
BauI	CACGAG	1 cut(s)	642
BbsI	GAAGAC	2 cut(s)	10, 451
BbvI	GCAGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	3 cut(s)	76, 103, 377
BcoDI	GTCTC	1 cut(s)	358
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	3 cut(s)	76, 103, 377
Bme18I	GGWCC	1 cut(s)	542
BmeT110I	CYCGRG	2 cut(s)	215, 438
BmgT120I	GGNCC	1 cut(s)	542
BmrFI	CCNGG	3 cut(s)	76, 103, 377
BmsI	GCATC	1 cut(s)	550
BpiI	GAAGAC	2 cut(s)	10, 451
BpuEI	CTTGAG	5 cut(s)	40, 162, 163, 293, 443
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	437
BsaWI	WCCGGW	1 cut(s)	65
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 235, 265
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	3 cut(s)	76, 103, 377
BseDI	CCNNGG	1 cut(s)	437
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	282
BseRI	GAGGAG	5 cut(s)	160, 163, 166, 256, 259
BseXI	GCAGC	1 cut(s)	155
BseYI	CCCAGC	1 cut(s)	38
BshFI	GGCC	2 cut(s)	420, 490
BsiHKCI	CYCGRG	2 cut(s)	215, 438
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	481
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	420, 490
Bso31I	GGTCTC	1 cut(s)	358
BsoBI	CYCGRG	2 cut(s)	215, 438
Bsp143I	GATC	3 cut(s)	395, 432, 595
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	2 cut(s)	420, 490
BspCNI	CTCAG	1 cut(s)	283
BspPI	GGATC	3 cut(s)	390, 427, 590
BspTNI	GGTCTC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	3 cut(s)	395, 432, 595
BssSI	CACGAG	1 cut(s)	642
Bst2BI	CACGAG	1 cut(s)	642
Bst2UI	CCWGG	3 cut(s)	76, 103, 377
Bst4CI	ACNGT	2 cut(s)	113, 413
Bst6I	CTCTTC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	291
BstKTI	GATC	3 cut(s)	398, 435, 598
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	3 cut(s)	395, 432, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstNI	CCWGG	3 cut(s)	76, 103, 377
BstSCI	CCNGG	3 cut(s)	74, 101, 375
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	2 cut(s)	10, 451
BsuRI	GGCC	2 cut(s)	420, 490
BtsIMutI	CAGTG	1 cut(s)	418
CaiI	CAGNNNCTG	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	542
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	3 cut(s)	296, 400, 557
CviJI	RGCY	9 cut(s)	5, 42, 124, 176, 375, 380, 420, 490, 638
CviKI_1	RGCY	9 cut(s)	5, 42, 124, 176, 375, 380, 420, 490, 638
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	3 cut(s)	397, 434, 597
DpnII	GATC	3 cut(s)	395, 432, 595
EaeI	YGGCCR	1 cut(s)	488
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco147I	AGGCCT	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	381
Eco88I	CYCGRG	2 cut(s)	215, 438
EcoRII	CCWGG	3 cut(s)	74, 101, 375
FaeI	CATG	3 cut(s)	299, 403, 560
FaiI	YATR	8 cut(s)	230, 254, 297, 401, 497, 558, 601, 603
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	3 cut(s)	295, 399, 556
FauNDI	CATATG	1 cut(s)	601
Fnu4HI	GCNGC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	169
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	420, 490
HapII	CCGG	1 cut(s)	66
Hin1II	CATG	3 cut(s)	299, 403, 560
HinfI	GANTC	5 cut(s)	182, 218, 256, 300, 447
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	2 cut(s)	55, 570
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	3 cut(s)	91, 187, 261
Hpy188III	TCNNGA	2 cut(s)	179, 611
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	2 cut(s)	226, 410
HpyCH4III	ACNGT	2 cut(s)	113, 413
HpyCH4V	TGCA	3 cut(s)	171, 403, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	299, 403, 560
Kzo9I	GATC	3 cut(s)	395, 432, 595
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	550
MalI	GATC	3 cut(s)	397, 434, 597
MboI	GATC	3 cut(s)	395, 432, 595
MboII	GAAGA	5 cut(s)	10, 218, 456, 466, 626
MlsI	TGGCCA	1 cut(s)	490
MluCI	AATT	2 cut(s)	93, 236
MluNI	TGGCCA	1 cut(s)	490
MlyI	GAGTC	3 cut(s)	227, 265, 441
MmeI	TCCRAC	2 cut(s)	69, 284
Mox20I	TGGCCA	1 cut(s)	490
MscI	TGGCCA	1 cut(s)	490
Msp20I	TGGCCA	1 cut(s)	490
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	3 cut(s)	76, 103, 377
MvaI	CCWGG	3 cut(s)	76, 103, 377
MwoI	GCNNNNNNNGC	1 cut(s)	400
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	3 cut(s)	395, 432, 595
NlaIII	CATG	3 cut(s)	299, 403, 560
PceI	AGGCCT	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	182, 300
PfoI	TCCNGGA	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	3 cut(s)	226, 264, 441
PpsI	GAGTC	3 cut(s)	226, 264, 441
Psp6I	CCWGG	3 cut(s)	74, 101, 375
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	3 cut(s)	74, 101, 375
PspPI	GGNCC	1 cut(s)	542
PstNI	CAGNNNCTG	1 cut(s)	165
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	3 cut(s)	395, 432, 595
Sau96I	GGNCC	1 cut(s)	542
SchI	GAGTC	3 cut(s)	227, 265, 441
ScrFI	CCNGG	3 cut(s)	76, 103, 377
SetI	ASST	5 cut(s)	80, 158, 178, 334, 586
SfaNI	GCATC	1 cut(s)	550
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	5 cut(s)	55, 142, 177, 272, 422
SmoI	CTYRAG	5 cut(s)	55, 142, 177, 272, 422
Sse9I	AATT	2 cut(s)	93, 236
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	1 cut(s)	350
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	3 cut(s)	74, 101, 375
TaaI	ACNGT	2 cut(s)	113, 413
TasI	AATT	2 cut(s)	93, 236
TfiI	GAWTC	2 cut(s)	182, 300
TscAI	CASTG	1 cut(s)	418
TseI	GCWGC	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	245, 618
TspRI	CASTG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.